HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:13.6 nTPM
HPA Brain:40.6 nTPM
GTEx:13.6 nTPM
FANTOM5:72.9 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:10.9 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007413Antibody HPA071997
Glial cells LowMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 40.6
Sample id Sample description nTPM
Hippocampus
nTPM: 39.7
1911 Female, age 85, right hemisphere 44.4
1898 Male, age 80, left hemisphere 42.8
2529 Female, age 94, left hemisphere 40.1
2621 Female, age 67, right hemisphere 38.1
2148 Female, age 91, left hemisphere 36.6
1855 Male, age 76, left hemisphere 36.1
Dentate gyrus
nTPM: 40.5
2530 Female, age 94, left hemisphere 46.2
2528 Male, age 74, both hemispheres 44.3
2246 Female, age 85, both hemispheres 40.2
2531 Female, age 67, both hemispheres 37.9
2010 Male, age 76, both hemispheres 37.6
1927 Female, age 91, both hemispheres 37.0
Entorhinal gyrus
nTPM: 37.7
2117 Female, age 91, right hemisphere 42.5
2613 Female, age 94, left hemisphere 42.2
1938 Female, age 85, left hemisphere 38.6
2764 Male, age 80, right hemisphere 35.8
1787 Male, age 76, left hemisphere 35.7
2686 Male, age 75, right hemisphere 31.2
Hippocampus, CA1
nTPM: 40.2
2749 Male, age 80, left hemisphere 47.8
1873 Female, age 85, both hemispheres 41.3
2527 Male, age 74, both hemispheres 40.4
2082 Female, age 91, right hemisphere 38.9
2045 Male, age 76, both hemispheres 32.7
Hippocampus, CA2
nTPM: 39.1
2249 Male, age 74, both hemispheres 46.2
1963 Male, age 80, left hemisphere 42.4
2113 Female, age 91, right hemisphere 41.9
1940 Female, age 85, left hemisphere 37.6
2437 Female, age 94, left hemisphere 33.9
1892 Male, age 76, both hemispheres 32.3
Hippocampus, CA3
nTPM: 37.1
1891 Female, age 85, both hemispheres 41.8
2137 Male, age 80, left hemisphere 40.9
2436 Male, age 74, both hemispheres 40.6
2620 Female, age 94, left hemisphere 35.5
1867 Male, age 76, both hemispheres 34.5
2861 Female, age 67, both hemispheres 29.3
Parahippocampal cortex
nTPM: 40.2
2532 Female, age 72, left hemisphere 46.1
2245 Female, age 91, both hemispheres 43.2
2693 Female, age 94, both hemispheres 42.9
1933 Female, age 85, both hemispheres 42.2
1990 Female, age 91, right hemisphere 42.0
2018 Male, age 76, both hemispheres 40.7
1850 Male, age 80, both hemispheres 38.8
2250 Female, age 67, right hemisphere 35.7
2622 Female, age 67, right hemisphere 35.3
2692 Male, age 74, both hemispheres 35.3
Perirhinal gyrus
nTPM: 38.4
1794 Male, age 80, right hemisphere 43.3
1841 Female, age 85, right hemisphere 40.6
2521 Female, age 94, right hemisphere 37.8
1847 Female, age 91, left hemisphere 35.7
2848 Male, age 76, right hemisphere 34.7
Subiculum
nTPM: 40.6
1901 Male, age 80, both hemispheres 47.0
2619 Male, age 74, both hemispheres 43.6
2729 Female, age 91, right hemisphere 41.4
1977 Female, age 85, both hemispheres 38.4
2042 Male, age 76, both hemispheres 37.6
2438 Female, age 94, left hemisphere 35.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 13.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.6
Samples: 197

Max nTPM: 24.0
Min nTPM: 7.6
Std nTPM: 2.6
Median nTPM: 13.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 24.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 22.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 20.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 19.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 19.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 19.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 18.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 18.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 18.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 18.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.9
FF:10153-102I9 76 years, female 76.2
FF:10169-103B7 60 years, female 69.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 22.4
Pig sample Sample description nTPM
Subiculum
nTPM: 20.6
Samples: 4

Max nTPM: 22.7
Min nTPM: 17.8
Sample A Female 22.7
Sample B Female 20.2
Sample C Male 21.7
Sample D Male 17.8
Dorsal hippocampus
nTPM: 22.4
Samples: 4

Max nTPM: 24.3
Min nTPM: 19.3
Sample A Female 24.3
Sample B Female 22.1
Sample C Male 23.9
Sample D Male 19.3
Entorhinal cortex
nTPM: 18.4
Samples: 4

Max nTPM: 19.2
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 18.8
Sample C Male 19.2
Sample D Male 17.9
Ventral hippocampus
nTPM: 21.8
Samples: 4

Max nTPM: 23.7
Min nTPM: 19.5
Sample A Female 23.7
Sample B Female 20.1
Sample C Male 23.7
Sample D Male 19.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 10.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.0
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.4
Sample A Male 9.7
Sample B Male 7.4
Sample C Female 7.6
Sample D Female 7.4
Hippocampal formation
nTPM: 10.9
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.7
Sample A Male 11.5
Sample B Male 12.2
Sample C Female 12.1
Sample D Female 7.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
68341758 Antisense, RP_041207_02_B05, Mouse strain C57BL/6J (56 days, male) 1.4
71213111 Antisense, RP_050816_03_H07, Mouse strain C57BL/6J (56 days, male) 0.0

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