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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRF6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
119.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
110.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
95.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
93.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
85.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
83.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
79.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
79.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
77.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
76.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
76.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
74.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
72.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
69.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
65.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
64.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
63.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
60.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
59.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
57.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
57.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
57.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
56.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
55.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
55.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
53.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
53.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
53.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
52.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
52.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
52.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
50.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
48.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
48.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
48.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
48.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
48.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
48.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
46.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
45.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
44.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
43.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
42.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
42.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
41.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
40.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
40.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
39.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
39.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
35.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
35.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
25.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRF6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.1
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
110.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
96.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
87.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
72.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
69.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
69.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
66.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
62.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
62.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
61.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
57.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
56.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
55.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
54.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
53.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
52.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
51.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
50.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
49.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
48.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
48.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
46.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
44.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
42.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
39.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
38.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
36.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
36.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
31.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.7
953
Tumor
1.5
1031
Tumor
1.5
921
Tumor
1.5
357
Tumor
1.4
313
Tumor
1.3
271
Tumor
1.2
445
Tumor
1.2
483
Tumor
1.2
553
Tumor
1.2
131
Tumor
1.1
1013
Tumor
1.1
957
Tumor
1.1
171
Tumor
1.1
231
Tumor
1.1
393
Tumor
1.1
375
Tumor
1.0
533
Tumor
1.0
471
Tumor
1.0
465
Tumor
0.9
863
Tumor
0.9
211
Tumor
0.9
477
Tumor
0.8
473
Tumor
0.8
123
Tumor
0.8
777
Tumor
0.7
1041
Tumor
0.7
873
Tumor
0.7
975
Tumor
0.7
187
Tumor
0.6
977
Tumor
0.6
641
Tumor
0.6
557
Tumor
0.6
741
Tumor
0.6
221
Tumor
0.5
527
Tumor
0.5
361
Tumor
0.5
745
Tumor
0.5
663
Tumor
0.5
925
Tumor
0.5
1021
Tumor
0.5
817
Tumor
0.5
755
Tumor
0.5
267
Tumor
0.4
881
Tumor
0.4
737
Tumor
0.4
883
Tumor
0.4
451
Tumor
0.4
411
Tumor
0.3
423
Tumor
0.3
563
Tumor
0.3
913
Tumor
0.3
461
Tumor
0.3
1043
Tumor
0.3
185
Tumor
0.3
113
Tumor
0.3
915
Tumor
0.3
867
Tumor
0.2
257
Tumor
0.2
695
Tumor
0.2
191
Tumor
0.2
951
Tumor
0.2
358
Normal
0.2
665
Tumor
0.2
635
Tumor
0.2
342
Normal
0.2
647
Tumor
0.2
857
Tumor
0.1
161
Tumor
0.1
297
Tumor
0.1
145
Tumor
0.1
911
Tumor
0.1
515
Tumor
0.1
186
Normal
0.1
912
Normal
0.1
924
Normal
0.1
525
Tumor
0.1
421
Tumor
0.1
746
Normal
0.1
452
Normal
0.1
1027
Tumor
0.1
963
Tumor
0.1
427
Tumor
0.1
446
Normal
0.1
1046
Normal
0.1
127
Tumor
0.1
344
Normal
0.1
862
Normal
0.1
135
Tumor
0.1
696
Normal
0.0
721
Tumor
0.0
395
Tumor
0.0
443
Tumor
0.0
685
Tumor
0.0
617
Tumor
0.0
823
Tumor
0.0
756
Normal
0.0
698
Normal
0.0
112
Tumor
0.0
944
Normal
0.0
353
Tumor
0.0
981
Tumor
0.0
818
Normal
0.0
982
Normal
0.0
436
Normal
0.0
716
Normal
0.0
142
Normal
0.0
354
Normal
0.0
744
Normal
0.0
415
Tumor
0.0
923
Tumor
0.0
416
Normal
0.0
858
Normal
0.0
554
Normal
-0.1
493
Tumor
-0.1
355
Tumor
-0.1
1014
Normal
-0.1
568
Normal
-0.1
785
Tumor
-0.1
433
Tumor
-0.1
435
Tumor
-0.1
422
Normal
-0.1
952
Normal
-0.1
546
Normal
-0.1
615
Tumor
-0.1
852
Normal
-0.1
332
Normal
-0.1
697
Tumor
-0.1
132
Normal
-0.1
1026
Normal
-0.1
456
Normal
-0.1
272
Normal
-0.1
392
Normal
-0.1
864
Normal
-0.1
868
Normal
-0.1
368
Normal
-0.1
955
Tumor
-0.1
455
Tumor
-0.1
261
Tumor
-0.1
938
Normal
-0.1
426
Normal
-0.1
567
Tumor
-0.1
376
Normal
-0.1
636
Normal
-0.1
984
Normal
-0.1
146
Normal
-0.1
926
Normal
-0.1
534
Normal
-0.1
715
Tumor
-0.1
1032
Normal
-0.1
922
Normal
-0.1
616
Normal
-0.1
462
Normal
-0.1
954
Normal
-0.1
956
Normal
-0.1
482
Normal
-0.1
714
Normal
-0.1
232
Normal
-0.1
424
Normal
-0.1
914
Normal
-0.2
666
Normal
-0.2
428
Normal
-0.2
1044
Normal
-0.2
356
Normal
-0.2
412
Normal
-0.2
1016
Normal
-0.2
882
Normal
-0.2
138
Normal
-0.2
298
Normal
-0.2
813
Tumor
-0.2
618
Normal
-0.2
128
Normal
-0.2
384
Normal
-0.2
513
Tumor
-0.2
488
Normal
-0.2
328
Normal
-0.2
742
Normal
-0.2
447
Tumor
-0.2
268
Normal
-0.2
884
Normal
-0.2
571
Tumor
-0.2
137
Tumor
-0.2
364
Normal
-0.2
1025
Tumor
-0.2
331
Tumor
-0.2
414
Normal
-0.2
964
Normal
-0.2
388
Normal
-0.2
642
Normal
-0.2
968
Normal
-0.2
431
Tumor
-0.2
874
Normal
-0.2
866
Normal
-0.2
258
Normal
-0.2
111
Normal
-0.2
224
Normal
-0.2
484
Normal
-0.2
672
Normal
-0.2
214
Normal
-0.2
686
Normal
-0.2
918
Normal
-0.2
314
Normal
-0.2
664
Normal
-0.2
958
Normal
-0.2
432
Normal
-0.2
528
Normal
-0.2
362
Normal
-0.2
628
Normal
-0.2
464
Normal
-0.3
778
Normal
-0.3
277
Tumor
-0.3
136
Normal
-0.3
162
Normal
-0.3
723
Tumor
-0.3
538
Normal
-0.3
286
Normal
-0.3
572
Normal
-0.3
472
Normal
-0.3
518
Normal
-0.3
558
Normal
-0.3
394
Normal
-0.3
478
Normal
-0.3
262
Normal
-0.3
1042
Normal
-0.3
878
Normal
-0.3
865
Tumor
-0.3
341
Tumor
-0.3
1028
Normal
-0.3
222
Normal
-0.3
396
Normal
-0.3
448
Normal
-0.3
662
Normal
-0.3
352
Normal
-0.3
124
Normal
-0.3
228
Normal
-0.3
824
Normal
-0.3
738
Normal
-0.3
786
Normal
-0.3
1022
Normal
-0.3
278
Normal
-0.3
648
Normal
-0.3
474
Normal
-0.3
196
Normal
-0.3
524
Normal
-0.3
545
Tumor
-0.3
148
Normal
-0.4
114
Normal
-0.4
574
Normal
-0.4
516
Normal
-0.4
284
Normal
-0.4
916
Normal
-0.4
816
Normal
-0.4
386
Normal
-0.4
141
Tumor
-0.4
481
Tumor
-0.4
172
Normal
-0.4
366
Normal
-0.4
466
Normal
-0.4
494
Normal
-0.4
851
Tumor
-0.4
1045
Tumor
-0.4
468
Normal
-0.4
937
Tumor
-0.4
564
Normal
-0.4
327
Tumor
-0.4
218
Normal
-0.4
526
Normal
-0.4
195
Tumor
-0.4
978
Normal
-0.4
312
Normal
-0.4
861
Tumor
-0.4
966
Normal
-0.5
212
Normal
-0.5
722
Normal
-0.5
498
Normal
-0.5
814
Normal
-0.5
627
Tumor
-0.5
728
Normal
-0.5
1015
Tumor
-0.5
487
Tumor
-0.5
976
Normal
-0.5
467
Tumor
-0.5
383
Tumor
-0.5
444
Normal
-0.6
188
Normal
-0.6
492
Normal
-0.6
126
Normal
-0.6
223
Tumor
-0.6
514
Normal
-0.6
434
Normal
-0.6
573
Tumor
-0.6
343
Tumor
-0.6
311
Tumor
-0.6
536
Normal
-0.7
365
Tumor
-0.7
497
Tumor
-0.7
192
Normal
-0.8
491
Tumor
-0.8
125
Tumor
-0.8
385
Tumor
-0.8
877
Tumor
-0.9
713
Tumor
-0.9
983
Tumor
-0.9
217
Tumor
-0.9
917
Tumor
-0.9
943
Tumor
-0.9
387
Tumor
-1.0
537
Tumor
-1.1
724
Normal
-1.1
283
Tumor
-1.1
213
Tumor
-1.2
671
Tumor
-1.2
351
Tumor
-1.2
391
Tumor
-1.2
413
Tumor
-1.2
815
Tumor
-1.4
517
Tumor
-1.4
463
Tumor
-1.4
965
Tumor
-1.4
743
Tumor
-1.4
227
Tumor
-1.4
363
Tumor
-1.4
425
Tumor
-1.5
367
Tumor
-1.5
523
Tumor
-1.5
727
Tumor
-1.6
661
Tumor
-1.6
967
Tumor
-1.7
285
Tumor
-1.7
535
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
