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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSD11B1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
259.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3525.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3376.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2382.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2172.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2143.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2019.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1646.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1495.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1479.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1444.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1443.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1315.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1308.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1298.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1211.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1207.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1193.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1178.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1138.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1100.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1062.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1025.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1024.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
988.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
979.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
951.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
929.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
924.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
914.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
893.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
891.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
793.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
784.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
745.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
731.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
683.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
680.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
675.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
649.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
623.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
621.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
618.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
601.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
584.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
572.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
554.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
543.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
539.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
533.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
523.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
507.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
496.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
490.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
487.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
485.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
481.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
480.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
477.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
476.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
466.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
455.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
452.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
445.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
444.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
434.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
431.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
418.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
405.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
405.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
396.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
394.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
393.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
393.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
389.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
382.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
379.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
378.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
370.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
366.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
363.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
363.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
359.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
356.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
355.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
355.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
354.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
348.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
341.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
321.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
316.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
315.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
312.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
309.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
307.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
297.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
294.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
291.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
290.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
285.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
282.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
279.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
266.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
263.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
252.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
250.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
249.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
246.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
242.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
241.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
239.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
239.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
229.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
229.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
228.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
215.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
214.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
214.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
212.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
212.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
208.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
205.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
205.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
204.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
204.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
204.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
201.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
201.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
200.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
198.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
197.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
194.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
193.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
192.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
185.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
183.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
183.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
181.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
180.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
175.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
173.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
172.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
171.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
168.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
167.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
167.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
167.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
166.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
161.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
159.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
156.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
156.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
156.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
154.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
153.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
150.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
149.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
145.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
142.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
138.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
136.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
136.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
133.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
132.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
119.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
116.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
116.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
113.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
110.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
109.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
106.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
105.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
105.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
101.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
97.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
96.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
96.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
95.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
94.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
85.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
84.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
79.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
79.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
78.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
76.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
75.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
75.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
75.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
74.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
73.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
72.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
69.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
68.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
66.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
66.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
63.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
63.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
62.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
62.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
61.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
58.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
56.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
56.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
55.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
55.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
55.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
53.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
51.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
50.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
46.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
43.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
40.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
40.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
38.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
34.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
32.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSD11B1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
270.4
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2300.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1966.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1842.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
1788.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
1684.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
1616.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
1580.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
1439.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1395.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
1255.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
1227.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
1154.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1039.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1011.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
977.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
964.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
918.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
876.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
875.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
867.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
866.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
853.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
819.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
765.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
754.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
735.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
722.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
722.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
716.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
686.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
656.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
583.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
569.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
564.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
545.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
531.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
530.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
511.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
473.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
465.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
465.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
464.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
458.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
432.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
421.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
420.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
419.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
408.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
406.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
395.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
395.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
393.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
393.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
389.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
387.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
380.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
380.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
362.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
352.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
352.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
352.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
351.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
349.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
344.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
334.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
326.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
325.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
324.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
322.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
321.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
308.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
291.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
284.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
282.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
260.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
248.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
245.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
239.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
237.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
237.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
237.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
234.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
228.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
225.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
219.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
218.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
211.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
193.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
192.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
188.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
182.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
179.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
172.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
166.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
162.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
160.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
157.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
149.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
148.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
147.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
144.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
144.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
135.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
134.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
131.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
130.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
128.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
124.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
118.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
116.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
115.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
113.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
112.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
108.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
108.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
105.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
104.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
99.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
98.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
97.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
92.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
90.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
87.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
78.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
77.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
75.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
71.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
65.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
62.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
60.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
59.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
57.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
54.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
54.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
54.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
53.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
49.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
46.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
43.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
43.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
41.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
36.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
915
Tumor
1.4
911
Tumor
1.4
615
Tumor
1.4
451
Tumor
1.4
481
Tumor
1.2
636
Normal
1.2
128
Normal
1.2
172
Normal
1.0
314
Normal
1.0
938
Normal
1.0
452
Normal
1.0
867
Tumor
0.9
648
Normal
0.9
196
Normal
0.9
912
Normal
0.9
222
Normal
0.9
127
Tumor
0.9
332
Normal
0.9
392
Normal
0.8
358
Normal
0.8
466
Normal
0.8
278
Normal
0.8
388
Normal
0.8
327
Tumor
0.8
436
Normal
0.8
878
Normal
0.8
132
Normal
0.8
744
Normal
0.8
572
Normal
0.8
148
Normal
0.8
232
Normal
0.8
162
Normal
0.8
664
Normal
0.8
1041
Tumor
0.7
426
Normal
0.7
564
Normal
0.7
464
Normal
0.7
944
Normal
0.7
618
Normal
0.7
981
Tumor
0.7
616
Normal
0.7
686
Normal
0.7
448
Normal
0.7
816
Normal
0.7
628
Normal
0.7
922
Normal
0.7
746
Normal
0.7
1022
Normal
0.7
394
Normal
0.7
111
Normal
0.7
342
Normal
0.7
376
Normal
0.7
714
Normal
0.7
738
Normal
0.7
866
Normal
0.7
1014
Normal
0.7
412
Normal
0.7
414
Normal
0.7
396
Normal
0.7
862
Normal
0.6
1032
Normal
0.6
742
Normal
0.6
432
Normal
0.6
298
Normal
0.6
484
Normal
0.6
568
Normal
0.6
142
Normal
0.6
642
Normal
0.6
422
Normal
0.6
124
Normal
0.6
136
Normal
0.6
864
Normal
0.6
662
Normal
0.6
258
Normal
0.6
698
Normal
0.6
366
Normal
0.6
534
Normal
0.6
424
Normal
0.6
462
Normal
0.6
488
Normal
0.6
954
Normal
0.6
186
Normal
0.6
494
Normal
0.6
361
Tumor
0.6
468
Normal
0.6
818
Normal
0.6
465
Tumor
0.6
982
Normal
0.6
984
Normal
0.6
446
Normal
0.5
882
Normal
0.5
482
Normal
0.5
824
Normal
0.5
666
Normal
0.5
357
Tumor
0.5
1046
Normal
0.5
723
Tumor
0.5
574
Normal
0.5
368
Normal
0.5
777
Tumor
0.5
262
Normal
0.5
558
Normal
0.5
786
Normal
0.5
228
Normal
0.5
138
Normal
0.5
728
Normal
0.5
914
Normal
0.5
286
Normal
0.5
884
Normal
0.5
344
Normal
0.5
858
Normal
0.5
428
Normal
0.5
362
Normal
0.5
523
Tumor
0.5
272
Normal
0.5
868
Normal
0.5
456
Normal
0.5
528
Normal
0.4
918
Normal
0.4
1028
Normal
0.4
857
Tumor
0.4
356
Normal
0.4
114
Normal
0.4
284
Normal
0.4
976
Normal
0.4
354
Normal
0.4
964
Normal
0.4
756
Normal
0.4
518
Normal
0.4
716
Normal
0.4
778
Normal
0.4
978
Normal
0.4
874
Normal
0.4
261
Tumor
0.4
515
Tumor
0.4
352
Normal
0.4
696
Normal
0.4
171
Tumor
0.3
214
Normal
0.3
416
Normal
0.3
546
Normal
0.3
1016
Normal
0.3
1026
Normal
0.3
924
Normal
0.3
472
Normal
0.3
968
Normal
0.3
514
Normal
0.3
218
Normal
0.3
474
Normal
0.3
852
Normal
0.3
952
Normal
0.3
312
Normal
0.3
267
Tumor
0.3
958
Normal
0.3
861
Tumor
0.2
365
Tumor
0.2
212
Normal
0.2
384
Normal
0.2
526
Normal
0.2
672
Normal
0.2
328
Normal
0.2
538
Normal
0.2
741
Tumor
0.2
722
Normal
0.2
926
Normal
0.1
955
Tumor
0.1
423
Tumor
0.1
146
Normal
0.1
268
Normal
0.1
137
Tumor
0.1
224
Normal
0.1
916
Normal
0.1
755
Tumor
0.1
445
Tumor
0.1
554
Normal
0.1
126
Normal
0.1
513
Tumor
0.0
956
Normal
0.0
665
Tumor
0.0
966
Normal
0.0
257
Tumor
0.0
1042
Normal
0.0
478
Normal
0.0
524
Normal
0.0
188
Normal
0.0
364
Normal
0.0
627
Tumor
0.0
1027
Tumor
0.0
785
Tumor
-0.1
1044
Normal
-0.1
873
Tumor
-0.1
953
Tumor
-0.1
421
Tumor
-0.1
386
Normal
-0.1
444
Normal
-0.1
434
Normal
-0.2
487
Tumor
-0.2
415
Tumor
-0.2
492
Normal
-0.2
685
Tumor
-0.2
715
Tumor
-0.2
536
Normal
-0.3
461
Tumor
-0.3
145
Tumor
-0.3
1043
Tumor
-0.3
863
Tumor
-0.3
516
Normal
-0.3
1013
Tumor
-0.3
913
Tumor
-0.4
231
Tumor
-0.4
191
Tumor
-0.4
185
Tumor
-0.4
498
Normal
-0.4
187
Tumor
-0.5
563
Tumor
-0.5
745
Tumor
-0.6
663
Tumor
-0.6
195
Tumor
-0.6
217
Tumor
-0.6
141
Tumor
-0.6
557
Tumor
-0.7
192
Normal
-0.7
161
Tumor
-0.7
393
Tumor
-0.7
353
Tumor
-0.8
297
Tumor
-0.8
943
Tumor
-0.8
313
Tumor
-0.8
977
Tumor
-0.9
431
Tumor
-0.9
112
Tumor
-0.9
477
Tumor
-0.9
721
Tumor
-0.9
433
Tumor
-0.9
447
Tumor
-0.9
533
Tumor
-1.0
814
Normal
-1.0
737
Tumor
-1.0
635
Tumor
-1.0
647
Tumor
-1.0
525
Tumor
-1.1
823
Tumor
-1.1
383
Tumor
-1.2
443
Tumor
-1.2
1045
Tumor
-1.2
883
Tumor
-1.2
881
Tumor
-1.2
147
Tumor
-1.3
483
Tumor
-1.3
343
Tumor
-1.3
123
Tumor
-1.3
963
Tumor
-1.3
1015
Tumor
-1.3
125
Tumor
-1.4
877
Tumor
-1.4
455
Tumor
-1.4
813
Tumor
-1.4
917
Tumor
-1.4
463
Tumor
-1.4
213
Tumor
-1.4
567
Tumor
-1.5
341
Tumor
-1.5
527
Tumor
-1.5
467
Tumor
-1.5
491
Tumor
-1.5
937
Tumor
-1.6
435
Tumor
-1.6
135
Tumor
-1.6
113
Tumor
-1.6
975
Tumor
-1.7
925
Tumor
-1.7
571
Tumor
-1.7
473
Tumor
-1.7
713
Tumor
-1.7
517
Tumor
-1.7
331
Tumor
-1.7
277
Tumor
-1.7
957
Tumor
-1.7
851
Tumor
-1.7
983
Tumor
-1.7
411
Tumor
-1.7
1031
Tumor
-1.7
375
Tumor
-1.8
573
Tumor
-1.8
413
Tumor
-1.8
695
Tumor
-1.8
271
Tumor
-1.8
1025
Tumor
-1.8
311
Tumor
-1.8
391
Tumor
-1.8
367
Tumor
-1.8
617
Tumor
-1.9
355
Tumor
-1.9
427
Tumor
-1.9
131
Tumor
-1.9
865
Tumor
-1.9
221
Tumor
-1.9
395
Tumor
-2.0
363
Tumor
-2.0
493
Tumor
-2.0
671
Tumor
-2.0
387
Tumor
-2.0
641
Tumor
-2.1
351
Tumor
-2.1
921
Tumor
-2.1
923
Tumor
-2.1
815
Tumor
-2.1
227
Tumor
-2.1
471
Tumor
-2.1
1021
Tumor
-2.1
724
Normal
-2.1
425
Tumor
-2.1
537
Tumor
-2.2
697
Tumor
-2.2
497
Tumor
-2.2
661
Tumor
-2.2
223
Tumor
-2.3
727
Tumor
-2.3
817
Tumor
-2.3
385
Tumor
-2.3
283
Tumor
-2.3
951
Tumor
-2.3
743
Tumor
-2.4
553
Tumor
-2.4
545
Tumor
-2.4
967
Tumor
-2.4
285
Tumor
-2.4
211
Tumor
-2.5
535
Tumor
-2.6
965
Tumor
-2.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.