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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DR1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
55.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DR1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
231
Samples
Sample
Description
TPM
DO45251
0 years, female, NA, stage:2, alive, 900 days
34.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.7
535
Tumor
1.2
497
Tumor
1.0
211
Tumor
0.9
131
Tumor
0.9
355
Tumor
0.9
965
Tumor
0.8
967
Tumor
0.8
865
Tumor
0.8
951
Tumor
0.8
283
Tumor
0.8
313
Tumor
0.8
943
Tumor
0.7
517
Tumor
0.7
425
Tumor
0.7
1021
Tumor
0.7
1025
Tumor
0.7
1027
Tumor
0.7
523
Tumor
0.6
393
Tumor
0.6
536
Normal
0.6
411
Tumor
0.6
483
Tumor
0.6
647
Tumor
0.6
147
Tumor
0.6
737
Tumor
0.6
383
Tumor
0.6
467
Tumor
0.6
297
Tumor
0.6
487
Tumor
0.6
473
Tumor
0.5
1013
Tumor
0.5
697
Tumor
0.5
953
Tumor
0.5
161
Tumor
0.5
387
Tumor
0.5
695
Tumor
0.4
112
Tumor
0.4
311
Tumor
0.4
537
Tumor
0.4
367
Tumor
0.4
663
Tumor
0.4
463
Tumor
0.4
455
Tumor
0.4
977
Tumor
0.4
1031
Tumor
0.4
573
Tumor
0.4
125
Tumor
0.4
567
Tumor
0.4
823
Tumor
0.4
661
Tumor
0.4
427
Tumor
0.3
975
Tumor
0.3
493
Tumor
0.3
814
Normal
0.3
923
Tumor
0.3
375
Tumor
0.3
1041
Tumor
0.3
545
Tumor
0.3
525
Tumor
0.3
527
Tumor
0.3
515
Tumor
0.3
477
Tumor
0.3
351
Tumor
0.3
478
Normal
0.3
395
Tumor
0.3
813
Tumor
0.3
513
Tumor
0.2
963
Tumor
0.2
123
Tumor
0.2
524
Normal
0.2
685
Tumor
0.2
777
Tumor
0.2
925
Tumor
0.2
492
Normal
0.2
461
Tumor
0.2
491
Tumor
0.2
715
Tumor
0.2
341
Tumor
0.2
851
Tumor
0.2
1015
Tumor
0.2
861
Tumor
0.2
413
Tumor
0.2
883
Tumor
0.2
727
Tumor
0.2
391
Tumor
0.2
921
Tumor
0.2
431
Tumor
0.1
741
Tumor
0.1
444
Normal
0.1
917
Tumor
0.1
635
Tumor
0.1
127
Tumor
0.1
743
Tumor
0.1
745
Tumor
0.1
563
Tumor
0.1
343
Tumor
0.1
533
Tumor
0.1
141
Tumor
0.1
257
Tumor
0.1
721
Tumor
0.1
385
Tumor
0.1
447
Tumor
0.1
331
Tumor
0.1
785
Tumor
0.1
571
Tumor
0.0
665
Tumor
0.0
617
Tumor
0.0
881
Tumor
0.0
223
Tumor
0.0
724
Normal
0.0
755
Tumor
0.0
213
Tumor
0.0
471
Tumor
0.0
817
Tumor
0.0
554
Normal
0.0
538
Normal
0.0
863
Tumor
0.0
433
Tumor
0.0
364
Normal
0.0
1043
Tumor
0.0
857
Tumor
0.0
966
Normal
0.0
212
Normal
0.0
357
Tumor
0.0
465
Tumor
0.0
952
Normal
0.0
867
Tumor
0.0
415
Tumor
0.0
516
Normal
-0.1
365
Tumor
-0.1
937
Tumor
-0.1
983
Tumor
-0.1
498
Normal
-0.1
231
Tumor
-0.1
277
Tumor
-0.1
873
Tumor
-0.1
981
Tumor
-0.1
224
Normal
-0.1
185
Tumor
-0.1
435
Tumor
-0.1
911
Tumor
-0.1
728
Normal
-0.1
412
Normal
-0.1
135
Tumor
-0.1
481
Tumor
-0.1
627
Tumor
-0.1
518
Normal
-0.1
416
Normal
-0.1
421
Tumor
-0.1
285
Tumor
-0.1
1045
Tumor
-0.1
924
Normal
-0.1
913
Tumor
-0.1
423
Tumor
-0.1
327
Tumor
-0.2
744
Normal
-0.2
716
Normal
-0.2
916
Normal
-0.2
756
Normal
-0.2
472
Normal
-0.2
284
Normal
-0.2
672
Normal
-0.2
723
Tumor
-0.2
445
Tumor
-0.2
137
Tumor
-0.2
392
Normal
-0.2
396
Normal
-0.2
482
Normal
-0.2
452
Normal
-0.2
874
Normal
-0.2
778
Normal
-0.2
824
Normal
-0.2
534
Normal
-0.2
434
Normal
-0.2
1016
Normal
-0.2
877
Tumor
-0.2
363
Tumor
-0.2
145
Tumor
-0.2
1028
Normal
-0.2
852
Normal
-0.2
162
Normal
-0.2
738
Normal
-0.2
914
Normal
-0.2
187
Tumor
-0.2
386
Normal
-0.2
553
Tumor
-0.2
526
Normal
-0.2
968
Normal
-0.2
868
Normal
-0.2
858
Normal
-0.2
352
Normal
-0.2
915
Tumor
-0.2
451
Tumor
-0.3
384
Normal
-0.3
474
Normal
-0.3
671
Tumor
-0.3
696
Normal
-0.3
328
Normal
-0.3
443
Tumor
-0.3
267
Tumor
-0.3
261
Tumor
-0.3
864
Normal
-0.3
188
Normal
-0.3
354
Normal
-0.3
146
Normal
-0.3
361
Tumor
-0.3
356
Normal
-0.3
124
Normal
-0.3
468
Normal
-0.3
456
Normal
-0.3
786
Normal
-0.3
918
Normal
-0.3
1026
Normal
-0.3
1032
Normal
-0.3
171
Tumor
-0.3
546
Normal
-0.3
436
Normal
-0.3
557
Tumor
-0.3
815
Tumor
-0.3
353
Tumor
-0.3
984
Normal
-0.3
641
Tumor
-0.3
394
Normal
-0.3
514
Normal
-0.3
344
Normal
-0.3
271
Tumor
-0.3
816
Normal
-0.3
362
Normal
-0.4
484
Normal
-0.4
368
Normal
-0.4
746
Normal
-0.4
862
Normal
-0.4
494
Normal
-0.4
558
Normal
-0.4
1014
Normal
-0.4
713
Tumor
-0.4
818
Normal
-0.4
615
Tumor
-0.4
722
Normal
-0.4
1042
Normal
-0.4
446
Normal
-0.4
978
Normal
-0.4
192
Normal
-0.4
466
Normal
-0.4
922
Normal
-0.4
464
Normal
-0.4
662
Normal
-0.4
227
Tumor
-0.4
142
Normal
-0.4
742
Normal
-0.4
664
Normal
-0.4
128
Normal
-0.4
358
Normal
-0.4
126
Normal
-0.4
488
Normal
-0.4
217
Tumor
-0.4
138
Normal
-0.4
148
Normal
-0.4
976
Normal
-0.4
884
Normal
-0.4
686
Normal
-0.4
956
Normal
-0.4
714
Normal
-0.4
648
Normal
-0.4
113
Tumor
-0.5
866
Normal
-0.5
114
Normal
-0.5
878
Normal
-0.5
424
Normal
-0.5
221
Tumor
-0.5
572
Normal
-0.5
628
Normal
-0.5
286
Normal
-0.5
938
Normal
-0.5
1022
Normal
-0.5
912
Normal
-0.5
955
Tumor
-0.5
228
Normal
-0.5
666
Normal
-0.5
111
Normal
-0.5
982
Normal
-0.5
186
Normal
-0.5
568
Normal
-0.5
574
Normal
-0.5
528
Normal
-0.5
132
Normal
-0.5
214
Normal
-0.5
195
Tumor
-0.5
964
Normal
-0.6
312
Normal
-0.6
272
Normal
-0.6
958
Normal
-0.6
448
Normal
-0.6
298
Normal
-0.6
342
Normal
-0.6
882
Normal
-0.6
926
Normal
-0.6
136
Normal
-0.6
564
Normal
-0.6
278
Normal
-0.6
172
Normal
-0.6
191
Tumor
-0.6
268
Normal
-0.6
376
Normal
-0.7
388
Normal
-0.7
422
Normal
-0.7
222
Normal
-0.7
428
Normal
-0.7
944
Normal
-0.7
262
Normal
-0.7
196
Normal
-0.7
954
Normal
-0.7
314
Normal
-0.7
366
Normal
-0.7
218
Normal
-0.8
432
Normal
-0.8
232
Normal
-0.8
414
Normal
-0.8
616
Normal
-0.8
636
Normal
-0.8
462
Normal
-0.9
426
Normal
-0.9
698
Normal
-0.9
332
Normal
-0.9
642
Normal
-0.9
258
Normal
-1.0
618
Normal
-1.0
1044
Normal
-1.1
1046
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
