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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BLZF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
55.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BLZF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
2.3
665
Tumor
1.3
721
Tumor
0.8
1041
Tumor
0.7
1013
Tumor
0.7
574
Normal
0.7
224
Normal
0.6
926
Normal
0.6
728
Normal
0.6
361
Tumor
0.6
723
Tumor
0.6
1025
Tumor
0.6
695
Tumor
0.6
171
Tumor
0.6
724
Normal
0.5
716
Normal
0.5
714
Normal
0.5
228
Normal
0.5
533
Tumor
0.5
286
Normal
0.5
191
Tumor
0.5
938
Normal
0.5
686
Normal
0.5
937
Tumor
0.5
528
Normal
0.4
161
Tumor
0.4
861
Tumor
0.4
647
Tumor
0.4
534
Normal
0.4
172
Normal
0.4
915
Tumor
0.4
148
Normal
0.4
922
Normal
0.4
912
Normal
0.4
863
Tumor
0.4
738
Normal
0.4
231
Tumor
0.4
745
Tumor
0.4
471
Tumor
0.4
462
Normal
0.4
147
Tumor
0.4
212
Normal
0.3
742
Normal
0.3
978
Normal
0.3
741
Tumor
0.3
867
Tumor
0.3
213
Tumor
0.3
663
Tumor
0.3
568
Normal
0.3
186
Normal
0.3
327
Tumor
0.3
162
Normal
0.3
713
Tumor
0.3
554
Normal
0.3
917
Tumor
0.3
785
Tumor
0.3
696
Normal
0.3
814
Normal
0.3
527
Tumor
0.3
546
Normal
0.3
415
Tumor
0.3
384
Normal
0.3
865
Tumor
0.3
913
Tumor
0.3
227
Tumor
0.3
951
Tumor
0.3
367
Tumor
0.3
362
Normal
0.2
816
Normal
0.2
1027
Tumor
0.2
514
Normal
0.2
722
Normal
0.2
411
Tumor
0.2
123
Tumor
0.2
1014
Normal
0.2
187
Tumor
0.2
366
Normal
0.2
365
Tumor
0.2
1021
Tumor
0.2
217
Tumor
0.2
956
Normal
0.2
192
Normal
0.2
877
Tumor
0.2
283
Tumor
0.2
868
Normal
0.2
1026
Normal
0.2
195
Tumor
0.2
866
Normal
0.2
1028
Normal
0.2
955
Tumor
0.2
661
Tumor
0.1
1016
Normal
0.1
1032
Normal
0.1
284
Normal
0.1
746
Normal
0.1
944
Normal
0.1
777
Tumor
0.1
443
Tumor
0.1
943
Tumor
0.1
984
Normal
0.1
823
Tumor
0.1
976
Normal
0.1
873
Tumor
0.1
223
Tumor
0.1
862
Normal
0.1
882
Normal
0.1
188
Normal
0.1
778
Normal
0.1
482
Normal
0.1
954
Normal
0.1
232
Normal
0.1
864
Normal
0.1
446
Normal
0.1
267
Tumor
0.1
472
Normal
0.1
857
Tumor
0.1
285
Tumor
0.1
744
Normal
0.1
884
Normal
0.1
858
Normal
0.1
261
Tumor
0.1
474
Normal
0.1
375
Tumor
0.1
914
Normal
0.1
851
Tumor
0.1
328
Normal
0.1
965
Tumor
0.0
518
Normal
0.0
685
Tumor
0.0
473
Tumor
0.0
572
Normal
0.0
666
Normal
0.0
185
Tumor
0.0
416
Normal
0.0
874
Normal
0.0
824
Normal
0.0
958
Normal
0.0
516
Normal
0.0
461
Tumor
0.0
664
Normal
0.0
355
Tumor
0.0
1015
Tumor
0.0
368
Normal
0.0
883
Tumor
0.0
1046
Normal
0.0
957
Tumor
0.0
878
Normal
0.0
968
Normal
0.0
553
Tumor
0.0
271
Tumor
0.0
564
Normal
0.0
648
Normal
0.0
964
Normal
0.0
963
Tumor
0.0
364
Normal
0.0
558
Normal
0.0
257
Tumor
0.0
916
Normal
0.0
526
Normal
0.0
478
Normal
0.0
952
Normal
0.0
481
Tumor
0.0
1042
Normal
-0.1
923
Tumor
-0.1
383
Tumor
-0.1
918
Normal
-0.1
698
Normal
-0.1
433
Tumor
-0.1
434
Normal
-0.1
356
Normal
-0.1
448
Normal
-0.1
715
Tumor
-0.1
515
Tumor
-0.1
538
Normal
-0.1
756
Normal
-0.1
126
Normal
-0.1
818
Normal
-0.1
1045
Tumor
-0.1
697
Tumor
-0.1
672
Normal
-0.1
563
Tumor
-0.1
376
Normal
-0.1
852
Normal
-0.1
1022
Normal
-0.1
258
Normal
-0.1
982
Normal
-0.1
445
Tumor
-0.1
925
Tumor
-0.1
524
Normal
-0.1
881
Tumor
-0.1
967
Tumor
-0.1
975
Tumor
-0.1
1044
Normal
-0.1
128
Normal
-0.1
412
Normal
-0.2
737
Tumor
-0.2
924
Normal
-0.2
477
Tumor
-0.2
921
Tumor
-0.2
966
Normal
-0.2
727
Tumor
-0.2
435
Tumor
-0.2
537
Tumor
-0.2
755
Tumor
-0.2
211
Tumor
-0.2
536
Normal
-0.2
268
Normal
-0.2
786
Normal
-0.2
1031
Tumor
-0.2
517
Tumor
-0.2
125
Tumor
-0.2
218
Normal
-0.2
662
Normal
-0.2
953
Tumor
-0.2
981
Tumor
-0.2
262
Normal
-0.2
111
Normal
-0.2
127
Tumor
-0.2
113
Tumor
-0.2
525
Tumor
-0.3
523
Tumor
-0.3
124
Normal
-0.3
743
Tumor
-0.3
513
Tumor
-0.3
447
Tumor
-0.3
114
Normal
-0.3
817
Tumor
-0.3
573
Tumor
-0.3
214
Normal
-0.3
431
Tumor
-0.3
432
Normal
-0.3
272
Normal
-0.3
436
Normal
-0.3
196
Normal
-0.3
815
Tumor
-0.4
567
Tumor
-0.4
222
Normal
-0.4
221
Tumor
-0.4
571
Tumor
-0.4
671
Tumor
-0.4
545
Tumor
-0.4
557
Tumor
-0.5
444
Normal
-0.5
977
Tumor
-0.5
983
Tumor
-0.5
363
Tumor
-0.5
112
Tumor
-0.5
1043
Tumor
-0.5
813
Tumor
-0.6
535
Tumor
-0.6
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
332
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
