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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERI3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
183.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
105.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
94.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
91.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
87.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
87.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
75.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
73.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
71.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
71.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
69.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
69.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
68.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
66.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
66.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
64.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
64.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
63.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
63.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
62.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
62.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
61.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
61.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
60.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
60.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
60.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
60.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
60.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
60.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
60.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
58.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
58.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
58.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
57.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
57.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
57.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
56.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
56.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
55.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
55.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
55.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
54.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
54.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
54.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
53.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
52.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
52.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
52.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
52.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
52.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
51.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
51.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
50.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
50.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
50.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
49.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
49.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
49.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
48.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
48.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
47.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
47.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
47.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
47.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
44.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
44.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
43.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
43.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
42.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
42.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
41.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
41.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
41.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
41.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
40.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
40.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
40.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
40.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
39.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
39.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
39.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
39.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
37.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
37.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
37.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
37.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
36.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
35.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
35.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
35.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
35.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
34.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
33.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
32.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
31.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
31.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
31.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
25.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERI3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.6
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
56.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
47.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
40.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
39.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
30.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
0.8
865
Tumor
0.7
925
Tumor
0.7
663
Tumor
0.6
411
Tumor
0.5
393
Tumor
0.5
137
Tumor
0.5
1021
Tumor
0.4
465
Tumor
0.4
911
Tumor
0.4
571
Tumor
0.4
425
Tumor
0.4
341
Tumor
0.4
685
Tumor
0.4
513
Tumor
0.4
431
Tumor
0.4
695
Tumor
0.3
744
Normal
0.3
1027
Tumor
0.3
313
Tumor
0.3
746
Normal
0.3
112
Tumor
0.3
327
Tumor
0.3
257
Tumor
0.3
128
Normal
0.3
162
Normal
0.2
261
Tumor
0.2
113
Tumor
0.2
186
Normal
0.2
387
Tumor
0.2
913
Tumor
0.2
185
Tumor
0.2
111
Normal
0.2
742
Normal
0.2
878
Normal
0.2
342
Normal
0.2
461
Tumor
0.2
436
Normal
0.2
738
Normal
0.2
114
Normal
0.2
1015
Tumor
0.2
141
Tumor
0.2
443
Tumor
0.2
515
Tumor
0.2
557
Tumor
0.2
533
Tumor
0.2
172
Normal
0.2
357
Tumor
0.2
123
Tumor
0.2
375
Tumor
0.2
148
Normal
0.1
737
Tumor
0.1
367
Tumor
0.1
957
Tumor
0.1
777
Tumor
0.1
161
Tumor
0.1
816
Normal
0.1
647
Tumor
0.1
567
Tumor
0.1
883
Tumor
0.1
214
Normal
0.1
857
Tumor
0.1
124
Normal
0.1
924
Normal
0.1
1041
Tumor
0.1
126
Normal
0.1
527
Tumor
0.1
1022
Normal
0.1
277
Tumor
0.1
433
Tumor
0.1
146
Normal
0.1
188
Normal
0.1
981
Tumor
0.1
867
Tumor
0.1
866
Normal
0.1
873
Tumor
0.1
283
Tumor
0.1
824
Normal
0.0
196
Normal
0.0
778
Normal
0.0
914
Normal
0.0
943
Tumor
0.0
462
Normal
0.0
861
Tumor
0.0
952
Normal
0.0
882
Normal
0.0
125
Tumor
0.0
138
Normal
0.0
353
Tumor
0.0
862
Normal
0.0
223
Tumor
0.0
388
Normal
0.0
434
Normal
0.0
394
Normal
0.0
864
Normal
0.0
491
Tumor
0.0
1026
Normal
0.0
545
Tumor
0.0
272
Normal
0.0
698
Normal
0.0
171
Tumor
0.0
448
Normal
0.0
966
Normal
0.0
1045
Tumor
0.0
617
Tumor
0.0
383
Tumor
0.0
497
Tumor
0.0
427
Tumor
0.0
145
Tumor
0.0
745
Tumor
0.0
546
Normal
0.0
136
Normal
0.0
1028
Normal
0.0
451
Tumor
0.0
191
Tumor
0.0
344
Normal
0.0
937
Tumor
0.0
218
Normal
0.0
874
Normal
0.0
955
Tumor
0.0
956
Normal
0.0
858
Normal
0.0
386
Normal
0.0
365
Tumor
0.0
195
Tumor
0.0
467
Tumor
0.0
445
Tumor
-0.1
222
Normal
-0.1
435
Tumor
-0.1
728
Normal
-0.1
421
Tumor
-0.1
396
Normal
-0.1
392
Normal
-0.1
493
Tumor
-0.1
951
Tumor
-0.1
922
Normal
-0.1
132
Normal
-0.1
723
Tumor
-0.1
356
Normal
-0.1
721
Tumor
-0.1
423
Tumor
-0.1
534
Normal
-0.1
852
Normal
-0.1
142
Normal
-0.1
1013
Tumor
-0.1
147
Tumor
-0.1
918
Normal
-0.1
1044
Normal
-0.1
452
Normal
-0.1
968
Normal
-0.1
537
Tumor
-0.1
915
Tumor
-0.1
518
Normal
-0.1
977
Tumor
-0.1
686
Normal
-0.1
813
Tumor
-0.1
1016
Normal
-0.1
213
Tumor
-0.1
232
Normal
-0.1
412
Normal
-0.1
627
Tumor
-0.1
395
Tumor
-0.1
912
Normal
-0.1
488
Normal
-0.1
432
Normal
-0.1
563
Tumor
-0.1
358
Normal
-0.1
938
Normal
-0.1
727
Tumor
-0.1
923
Tumor
-0.1
884
Normal
-0.2
286
Normal
-0.2
192
Normal
-0.2
716
Normal
-0.2
953
Tumor
-0.2
976
Normal
-0.2
298
Normal
-0.2
352
Normal
-0.2
267
Tumor
-0.2
483
Tumor
-0.2
446
Normal
-0.2
1046
Normal
-0.2
135
Tumor
-0.2
818
Normal
-0.2
536
Normal
-0.2
965
Tumor
-0.2
528
Normal
-0.2
786
Normal
-0.2
258
Normal
-0.2
525
Tumor
-0.2
416
Normal
-0.2
696
Normal
-0.2
755
Tumor
-0.2
615
Tumor
-0.2
354
Normal
-0.2
756
Normal
-0.2
484
Normal
-0.2
231
Tumor
-0.2
982
Normal
-0.2
523
Tumor
-0.2
262
Normal
-0.2
1043
Tumor
-0.2
217
Tumor
-0.2
724
Normal
-0.2
212
Normal
-0.2
228
Normal
-0.2
944
Normal
-0.2
1025
Tumor
-0.2
468
Normal
-0.2
714
Normal
-0.2
494
Normal
-0.2
477
Tumor
-0.2
364
Normal
-0.2
268
Normal
-0.2
362
Normal
-0.3
538
Normal
-0.3
984
Normal
-0.3
722
Normal
-0.3
466
Normal
-0.3
444
Normal
-0.3
743
Tumor
-0.3
472
Normal
-0.3
815
Tumor
-0.3
964
Normal
-0.3
868
Normal
-0.3
464
Normal
-0.3
916
Normal
-0.3
127
Tumor
-0.3
456
Normal
-0.3
474
Normal
-0.3
487
Tumor
-0.3
526
Normal
-0.3
881
Tumor
-0.3
823
Tumor
-0.3
278
Normal
-0.3
697
Tumor
-0.3
573
Tumor
-0.3
343
Tumor
-0.3
535
Tumor
-0.3
422
Normal
-0.3
1032
Normal
-0.3
926
Normal
-0.3
814
Normal
-0.3
492
Normal
-0.3
455
Tumor
-0.3
958
Normal
-0.3
131
Tumor
-0.3
636
Normal
-0.3
332
Normal
-0.3
498
Normal
-0.3
426
Normal
-0.4
1042
Normal
-0.4
284
Normal
-0.4
514
Normal
-0.4
516
Normal
-0.4
391
Tumor
-0.4
376
Normal
-0.4
355
Tumor
-0.4
447
Tumor
-0.4
877
Tumor
-0.4
385
Tumor
-0.4
642
Normal
-0.4
366
Normal
-0.4
517
Tumor
-0.4
328
Normal
-0.4
297
Tumor
-0.4
554
Normal
-0.4
618
Normal
-0.4
662
Normal
-0.4
568
Normal
-0.4
954
Normal
-0.4
574
Normal
-0.4
271
Tumor
-0.4
221
Tumor
-0.4
564
Normal
-0.4
715
Tumor
-0.4
428
Normal
-0.4
975
Tumor
-0.4
851
Tumor
-0.4
1014
Normal
-0.4
414
Normal
-0.4
963
Tumor
-0.4
314
Normal
-0.5
312
Normal
-0.5
424
Normal
-0.5
713
Tumor
-0.5
921
Tumor
-0.5
482
Normal
-0.5
648
Normal
-0.5
664
Normal
-0.5
478
Normal
-0.5
863
Tumor
-0.5
368
Normal
-0.5
463
Tumor
-0.5
415
Tumor
-0.6
1031
Tumor
-0.6
363
Tumor
-0.6
187
Tumor
-0.6
817
Tumor
-0.6
572
Normal
-0.6
661
Tumor
-0.6
227
Tumor
-0.6
224
Normal
-0.6
558
Normal
-0.6
635
Tumor
-0.7
666
Normal
-0.7
351
Tumor
-0.7
524
Normal
-0.7
311
Tumor
-0.7
978
Normal
-0.7
983
Tumor
-0.7
481
Tumor
-0.7
553
Tumor
-0.7
473
Tumor
-0.7
785
Tumor
-0.7
331
Tumor
-0.7
665
Tumor
-0.7
616
Normal
-0.7
628
Normal
-0.8
967
Tumor
-0.8
471
Tumor
-0.8
413
Tumor
-0.8
384
Normal
-0.8
672
Normal
-0.8
917
Tumor
-0.8
361
Tumor
-0.9
211
Tumor
-0.9
285
Tumor
-0.9
641
Tumor
-1.0
671
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
