MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.1 nTPM
HPA Brain:109.5 nTPM
GTEx:69.1 nTPM
FANTOM5:50.9 Scaled Tags Per Million
Pig:118.0 nTPM
Mouse:96.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.4
2586 Male, age 75, left hemisphere 121.8
1827 Male, age 72, unknown 107.5
2828 Female, age 72, unknown 99.9
2666 Male, age 74, left hemisphere 94.4
2219 Male, age 76, both hemispheres 90.9
2411 Female, age 72, unknown 85.4
1833 Male, age 53, unknown 81.1
1870 Female, age 42, unknown 80.3
2019 Male, age 18, unknown 77.7
1830 Male, age 51, unknown 75.1
Dorsal raphe nucleus
nTPM: 88.4
2298 Female, age 72, unknown 94.3
2047 Male, age 72, unknown 88.6
2750 Male, age 76, both hemispheres 88.2
1828 Male, age 53, unknown 87.5
2016 Female, age 72, unknown 83.7
Inferior colliculus
nTPM: 79.2
1890 Male, age 53, unknown 80.6
2849 Male, age 72, unknown 79.8
2097 Female, age 72, unknown 79.4
1848 Female, age 42, unknown 77.2
Median raphe nucleus
nTPM: 91.6
2220 Male, age 76, midline 91.6
Periaquaductal grey, anterior
nTPM: 109.5
1947 Male, age 18, unknown 115.8
1795 Male, age 51, unknown 111.1
2502 Female, age 75, unknown 101.8
Periaquaductal grey, dorsal
nTPM: 84.9
1840 Male, age 53, unknown 92.7
2464 Female, age 72, unknown 86.3
2850 Male, age 76, both hemispheres 83.3
1831 Male, age 72, unknown 77.3
Periaquaductal grey, lateral
nTPM: 84.0
2053 Male, age 18, unknown 91.5
2140 Male, age 76, both hemispheres 80.6
2272 Male, age 74, both hemispheres 80.0
Pretectal area
nTPM: 97.6
1816 Male, age 51, unknown 116.2
2007 Male, age 72, unknown 104.1
1944 Female, age 72, unknown 103.4
2667 Female, age 75, unknown 103.4
1817 Female, age 42, unknown 101.2
1815 Male, age 53, unknown 100.6
2224 Female, age 72, unknown 94.1
2407 Male, age 75, both hemispheres 92.8
2825 Male, age 18, unknown 91.9
2273 Male, age 74, both hemispheres 87.6
2316 Male, age 76, right hemisphere 78.0
Red nucleus
nTPM: 81.0
2725 Female, age 75, unknown 92.3
2584 Male, age 75, left hemisphere 90.6
2588 Male, age 74, left hemisphere 88.9
2503 Female, age 72, unknown 85.0
1865 Male, age 51, unknown 79.5
2227 Male, age 72, unknown 79.0
1821 Female, age 72, unknown 78.7
1904 Male, age 53, unknown 78.7
2785 Male, age 18, unknown 77.4
2769 Male, age 72, unknown 75.4
2823 Male, age 76, right hemisphere 74.8
1954 Female, age 42, unknown 72.4
Substantia nigra
nTPM: 97.8
1916 Female, age 42, unknown 113.5
1851 Male, age 51, unknown 109.7
2241 Male, age 72, unknown 104.9
2409 Female, age 72, unknown 100.8
2583 Male, age 75, right hemisphere 95.4
2699 Male, age 18, unknown 95.0
2665 Male, age 74, both hemispheres 94.0
1941 Male, age 53, unknown 93.1
1889 Female, age 72, unknown 91.6
2590 Female, age 75, unknown 80.4
Superior colliculus
nTPM: 93.4
2664 Male, age 75, both hemispheres 117.7
2261 Male, age 18, unknown 105.6
1796 Male, age 53, unknown 105.2
2668 Female, age 75, unknown 99.1
2087 Female, age 72, unknown 92.5
1913 Female, age 42, unknown 85.7
1839 Male, age 51, unknown 83.9
2587 Male, age 74, left hemisphere 82.6
1895 Male, age 76, right hemisphere 81.4
1995 Male, age 72, unknown 80.2
Ventral tegmental area
nTPM: 91.9
1915 Female, age 42, unknown 100.2
2218 Male, age 76, both hemispheres 95.5
2410 Female, age 72, unknown 94.6
1942 Male, age 51, unknown 90.5
2223 Female, age 72, unknown 85.7
2021 Male, age 53, unknown 84.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 69.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.1
Samples: 139

Max nTPM: 115.2
Min nTPM: 32.2
Std nTPM: 15.7
Median nTPM: 67.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 111.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 109.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 100.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 98.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 96.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 94.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 93.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 93.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 91.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.9
FF:10158-103A5 76 years, female 50.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 118.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 104.8
Samples: 4

Max nTPM: 133.8
Min nTPM: 77.2
Sample A Female 133.8
Sample B Female 93.2
Sample C Male 114.8
Sample D Male 77.2
Midbrain
nTPM: 118.0
Samples: 4

Max nTPM: 157.9
Min nTPM: 101.5
Sample A Female 106.3
Sample B Female 106.3
Sample C Male 157.9
Sample D Male 101.5
Periaqueductal gray
nTPM: 95.8
Samples: 3

Max nTPM: 108.5
Min nTPM: 85.4
Sample B Female 93.4
Sample C Male 108.5
Sample D Male 85.4
Superior colliculi
nTPM: 110.8
Samples: 4

Max nTPM: 133.1
Min nTPM: 66.7
Sample A Female 133.1
Sample B Female 66.7
Sample C Male 129.5
Sample D Male 113.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 96.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.7
Samples: 4

Max nTPM: 97.9
Min nTPM: 94.5
Sample A Male 97.3
Sample B Male 97.9
Sample C Female 94.5
Sample D Female 97.1

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