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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPF3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
93.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
89.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
52.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
51.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPF3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.7
Number of samples
231
Samples
Sample
Description
TPM
DO50845
0 years, male, NA, stage:3, alive, 210 days
92.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
73.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
70.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
65.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
65.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
62.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
61.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
61.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
61.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
58.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
58.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
58.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
57.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
56.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
52.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
49.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
49.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
48.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
47.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
45.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
42.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
42.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
39.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
39.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
37.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
37.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
37.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
35.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
34.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
32.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
28.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.0
865
Tumor
1.0
497
Tumor
1.0
1013
Tumor
1.0
951
Tumor
1.0
743
Tumor
1.0
957
Tumor
0.9
1031
Tumor
0.9
523
Tumor
0.9
545
Tumor
0.9
123
Tumor
0.9
425
Tumor
0.9
965
Tumor
0.9
977
Tumor
0.8
473
Tumor
0.8
695
Tumor
0.8
817
Tumor
0.8
661
Tumor
0.8
537
Tumor
0.8
533
Tumor
0.8
313
Tumor
0.7
411
Tumor
0.7
331
Tumor
0.7
983
Tumor
0.7
355
Tumor
0.7
567
Tumor
0.7
427
Tumor
0.7
663
Tumor
0.7
647
Tumor
0.6
285
Tumor
0.6
1025
Tumor
0.6
953
Tumor
0.6
161
Tumor
0.6
517
Tumor
0.6
431
Tumor
0.6
487
Tumor
0.6
271
Tumor
0.6
1021
Tumor
0.5
515
Tumor
0.5
341
Tumor
0.5
975
Tumor
0.5
921
Tumor
0.5
525
Tumor
0.5
383
Tumor
0.5
553
Tumor
0.5
923
Tumor
0.5
477
Tumor
0.5
943
Tumor
0.5
221
Tumor
0.5
211
Tumor
0.5
413
Tumor
0.5
435
Tumor
0.5
777
Tumor
0.4
351
Tumor
0.4
573
Tumor
0.4
724
Normal
0.4
277
Tumor
0.4
881
Tumor
0.4
227
Tumor
0.4
283
Tumor
0.4
471
Tumor
0.4
357
Tumor
0.4
483
Tumor
0.4
393
Tumor
0.4
877
Tumor
0.4
635
Tumor
0.3
615
Tumor
0.3
375
Tumor
0.3
937
Tumor
0.3
443
Tumor
0.3
967
Tumor
0.3
141
Tumor
0.3
1043
Tumor
0.3
641
Tumor
0.3
367
Tumor
0.3
513
Tumor
0.3
715
Tumor
0.3
447
Tumor
0.3
493
Tumor
0.3
785
Tumor
0.3
463
Tumor
0.3
491
Tumor
0.2
433
Tumor
0.2
527
Tumor
0.2
665
Tumor
0.2
465
Tumor
0.2
737
Tumor
0.2
385
Tumor
0.2
213
Tumor
0.2
727
Tumor
0.2
863
Tumor
0.2
135
Tumor
0.2
147
Tumor
0.2
867
Tumor
0.2
445
Tumor
0.2
365
Tumor
0.2
171
Tumor
0.2
112
Tumor
0.2
395
Tumor
0.2
823
Tumor
0.2
815
Tumor
0.2
125
Tumor
0.2
461
Tumor
0.2
343
Tumor
0.2
1041
Tumor
0.2
423
Tumor
0.2
297
Tumor
0.2
1015
Tumor
0.2
217
Tumor
0.2
721
Tumor
0.1
191
Tumor
0.1
813
Tumor
0.1
187
Tumor
0.1
391
Tumor
0.1
911
Tumor
0.1
671
Tumor
0.1
873
Tumor
0.1
685
Tumor
0.1
883
Tumor
0.1
851
Tumor
0.1
861
Tumor
0.1
415
Tumor
0.1
451
Tumor
0.1
361
Tumor
0.1
741
Tumor
0.1
627
Tumor
0.1
467
Tumor
0.1
913
Tumor
0.1
963
Tumor
0.1
563
Tumor
0.1
697
Tumor
0.1
981
Tumor
0.1
857
Tumor
0.1
535
Tumor
0.1
557
Tumor
0.0
954
Normal
0.0
185
Tumor
0.0
915
Tumor
0.0
917
Tumor
0.0
498
Normal
0.0
1045
Tumor
0.0
387
Tumor
0.0
814
Normal
0.0
137
Tumor
0.0
455
Tumor
0.0
267
Tumor
0.0
311
Tumor
0.0
524
Normal
0.0
925
Tumor
0.0
327
Tumor
0.0
488
Normal
0.0
492
Normal
0.0
484
Normal
0.0
257
Tumor
-0.1
955
Tumor
-0.1
538
Normal
-0.1
984
Normal
-0.1
536
Normal
-0.1
958
Normal
-0.1
384
Normal
-0.1
571
Tumor
-0.1
127
Tumor
-0.1
964
Normal
-0.1
755
Tumor
-0.1
1014
Normal
-0.1
713
Tumor
-0.1
554
Normal
-0.1
534
Normal
-0.1
968
Normal
-0.1
982
Normal
-0.1
516
Normal
-0.1
1028
Normal
-0.1
546
Normal
-0.1
672
Normal
-0.1
224
Normal
-0.1
421
Tumor
-0.1
628
Normal
-0.1
113
Tumor
-0.1
231
Tumor
-0.1
744
Normal
-0.1
966
Normal
-0.1
363
Tumor
-0.1
884
Normal
-0.1
617
Tumor
-0.1
944
Normal
-0.1
1046
Normal
-0.1
978
Normal
-0.1
142
Normal
-0.2
938
Normal
-0.2
412
Normal
-0.2
261
Tumor
-0.2
494
Normal
-0.2
286
Normal
-0.2
912
Normal
-0.2
526
Normal
-0.2
878
Normal
-0.2
434
Normal
-0.2
444
Normal
-0.2
481
Tumor
-0.2
312
Normal
-0.2
664
Normal
-0.2
368
Normal
-0.2
742
Normal
-0.2
662
Normal
-0.2
778
Normal
-0.2
1026
Normal
-0.2
268
Normal
-0.2
924
Normal
-0.2
1027
Tumor
-0.2
745
Tumor
-0.2
478
Normal
-0.2
786
Normal
-0.2
353
Tumor
-0.2
328
Normal
-0.2
866
Normal
-0.2
272
Normal
-0.2
648
Normal
-0.2
976
Normal
-0.2
145
Tumor
-0.2
756
Normal
-0.2
228
Normal
-0.2
132
Normal
-0.2
1032
Normal
-0.2
518
Normal
-0.2
696
Normal
-0.2
232
Normal
-0.2
146
Normal
-0.2
364
Normal
-0.2
922
Normal
-0.2
918
Normal
-0.2
258
Normal
-0.2
738
Normal
-0.2
868
Normal
-0.2
636
Normal
-0.2
192
Normal
-0.2
376
Normal
-0.2
436
Normal
-0.2
284
Normal
-0.2
472
Normal
-0.2
916
Normal
-0.2
716
Normal
-0.2
882
Normal
-0.2
1016
Normal
-0.2
223
Tumor
-0.2
352
Normal
-0.2
1042
Normal
-0.2
862
Normal
-0.2
354
Normal
-0.2
686
Normal
-0.2
864
Normal
-0.2
362
Normal
-0.2
456
Normal
-0.2
572
Normal
-0.2
262
Normal
-0.2
926
Normal
-0.2
218
Normal
-0.3
858
Normal
-0.3
124
Normal
-0.3
314
Normal
-0.3
126
Normal
-0.3
448
Normal
-0.3
298
Normal
-0.3
528
Normal
-0.3
474
Normal
-0.3
1044
Normal
-0.3
874
Normal
-0.3
616
Normal
-0.3
666
Normal
-0.3
1022
Normal
-0.3
824
Normal
-0.3
852
Normal
-0.3
344
Normal
-0.3
196
Normal
-0.3
138
Normal
-0.3
728
Normal
-0.3
558
Normal
-0.3
464
Normal
-0.3
722
Normal
-0.3
342
Normal
-0.3
446
Normal
-0.3
698
Normal
-0.3
514
Normal
-0.3
714
Normal
-0.3
952
Normal
-0.3
136
Normal
-0.3
366
Normal
-0.3
214
Normal
-0.3
212
Normal
-0.3
642
Normal
-0.3
818
Normal
-0.3
956
Normal
-0.3
723
Tumor
-0.3
128
Normal
-0.3
392
Normal
-0.3
111
Normal
-0.3
414
Normal
-0.3
426
Normal
-0.3
278
Normal
-0.3
332
Normal
-0.3
816
Normal
-0.3
462
Normal
-0.3
222
Normal
-0.4
114
Normal
-0.4
428
Normal
-0.4
358
Normal
-0.4
564
Normal
-0.4
574
Normal
-0.4
914
Normal
-0.4
396
Normal
-0.4
482
Normal
-0.4
148
Normal
-0.4
356
Normal
-0.4
468
Normal
-0.4
452
Normal
-0.4
568
Normal
-0.4
618
Normal
-0.4
195
Tumor
-0.4
162
Normal
-0.4
416
Normal
-0.4
386
Normal
-0.4
188
Normal
-0.4
424
Normal
-0.4
432
Normal
-0.4
466
Normal
-0.4
186
Normal
-0.4
746
Normal
-0.4
422
Normal
-0.4
172
Normal
-0.4
394
Normal
-0.5
388
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
