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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD46 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
67.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
236.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
221.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
214.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
207.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
201.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
195.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
192.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
180.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
177.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
177.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
176.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
171.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
169.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
168.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
155.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
155.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
154.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
153.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
152.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
151.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
142.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
138.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
135.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
134.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
132.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
132.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
131.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
130.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
129.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
127.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
127.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
127.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
127.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
124.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
123.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
123.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
122.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
121.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
119.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
116.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
113.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
113.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
112.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
111.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
111.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
111.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
110.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
110.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
109.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
109.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
108.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
107.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
106.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
106.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
103.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
103.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
103.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
102.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
101.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
100.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
100.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
99.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
98.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
97.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
97.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
96.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
96.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
95.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
95.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
94.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
93.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
91.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
90.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
90.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
90.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
90.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
89.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
88.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
88.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
88.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
88.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
88.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
87.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
85.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
84.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
84.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
84.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
83.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
83.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
82.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
82.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
81.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
81.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
81.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
80.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
80.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
79.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
79.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
79.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
79.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
79.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
79.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
79.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
79.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
78.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
78.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
77.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
77.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
77.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
77.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
77.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
76.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
76.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
76.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
74.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
74.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
74.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
74.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
74.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
73.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
73.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
73.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
73.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
73.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
72.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
72.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
72.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
72.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
72.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
72.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
71.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
71.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
71.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
71.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
71.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
71.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
70.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
70.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
70.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
70.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
69.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
69.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
69.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
69.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
69.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
69.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
69.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
68.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
68.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
68.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
68.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
68.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
68.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
68.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
66.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
66.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
66.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
65.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
65.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
65.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
65.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
65.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
64.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
64.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
64.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
64.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
64.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
64.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
63.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
63.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
63.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
62.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
62.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
62.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
61.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
60.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
60.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
60.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
59.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
59.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
59.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
59.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
58.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
58.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
58.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
58.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
58.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
58.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
57.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
57.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
57.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
57.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
56.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
55.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
55.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
55.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
54.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
54.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
54.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
54.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
53.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
53.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
53.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
53.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
53.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
52.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
52.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
52.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
52.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
51.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
51.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
51.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
50.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
49.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
49.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
49.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
49.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
49.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
49.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
49.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
48.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
48.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
48.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
48.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
47.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
47.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
47.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
47.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
47.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
46.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
46.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
46.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
46.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
46.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
46.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
45.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
45.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
45.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
45.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
44.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
44.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
42.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
42.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
42.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
42.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
42.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
41.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
41.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
41.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
40.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
40.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
40.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
39.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
39.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
38.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
38.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
37.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
37.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
36.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
36.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
30.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD46 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
101.3
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
275.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
253.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
246.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
245.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
244.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
241.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
238.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
236.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
228.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
216.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
215.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
201.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
195.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
195.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
193.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
190.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
182.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
180.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
169.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
169.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
169.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
168.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
165.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
163.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
160.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
160.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
159.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
159.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
157.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
157.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
153.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
149.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
147.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
147.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
146.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
145.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
144.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
144.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
143.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
142.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
140.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
139.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
135.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
134.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
134.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
132.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
132.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
131.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
131.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
130.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
130.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
128.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
125.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
125.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
125.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
123.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
123.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
123.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
121.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
121.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
121.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
120.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
120.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
120.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
119.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
118.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
118.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
118.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
118.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
117.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
117.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
116.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
116.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
115.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
115.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
115.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
114.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
113.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
112.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
110.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
110.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
110.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
109.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
109.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
109.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
108.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
108.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
107.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
106.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
106.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
105.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
104.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
104.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
103.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
102.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
102.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
102.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
101.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
101.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
100.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
100.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
99.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
99.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
98.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
98.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
97.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
97.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
96.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
95.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
94.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
94.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
94.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
94.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
94.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
94.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
92.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
92.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
91.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
90.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
90.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
89.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
89.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
89.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
89.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
88.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
87.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
86.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
86.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
85.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
85.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
84.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
84.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
82.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
81.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
81.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
81.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
81.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
81.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
81.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
80.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
80.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
79.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
78.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
78.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
77.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
76.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
76.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
75.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
75.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
74.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
74.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
74.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
74.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
73.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
73.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
72.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
72.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
72.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
72.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
71.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
71.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
70.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
70.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
70.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
70.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
70.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
70.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
69.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
69.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
68.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
67.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
67.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
67.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
67.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
66.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
66.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
66.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
63.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
63.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
63.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
62.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
62.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
62.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
62.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
62.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
62.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
61.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
60.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
60.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
59.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
59.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
58.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
58.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
57.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
57.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
57.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
56.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
54.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
54.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
52.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
52.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
50.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
50.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
49.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
49.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
49.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
49.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
48.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
47.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
46.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
46.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
45.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
44.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
43.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
41.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
41.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
38.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
36.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
34.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.6
977
Tumor
1.4
131
Tumor
1.4
697
Tumor
1.4
951
Tumor
1.4
227
Tumor
1.3
491
Tumor
1.3
471
Tumor
1.3
745
Tumor
1.2
967
Tumor
1.1
965
Tumor
1.1
387
Tumor
1.1
823
Tumor
1.0
957
Tumor
1.0
685
Tumor
1.0
171
Tumor
1.0
963
Tumor
1.0
451
Tumor
0.9
1025
Tumor
0.9
517
Tumor
0.9
1041
Tumor
0.9
425
Tumor
0.9
483
Tumor
0.8
271
Tumor
0.8
533
Tumor
0.8
557
Tumor
0.8
911
Tumor
0.8
553
Tumor
0.8
1031
Tumor
0.7
737
Tumor
0.7
755
Tumor
0.7
413
Tumor
0.7
715
Tumor
0.6
343
Tumor
0.6
473
Tumor
0.6
915
Tumor
0.6
975
Tumor
0.6
445
Tumor
0.6
357
Tumor
0.6
1021
Tumor
0.6
231
Tumor
0.6
523
Tumor
0.6
331
Tumor
0.6
411
Tumor
0.6
921
Tumor
0.6
1043
Tumor
0.5
861
Tumor
0.5
147
Tumor
0.5
385
Tumor
0.5
527
Tumor
0.5
727
Tumor
0.5
285
Tumor
0.5
391
Tumor
0.5
865
Tumor
0.5
112
Tumor
0.4
537
Tumor
0.4
777
Tumor
0.4
1013
Tumor
0.4
883
Tumor
0.4
393
Tumor
0.4
573
Tumor
0.4
881
Tumor
0.4
363
Tumor
0.4
493
Tumor
0.4
937
Tumor
0.4
185
Tumor
0.3
713
Tumor
0.3
465
Tumor
0.3
477
Tumor
0.3
1027
Tumor
0.3
327
Tumor
0.3
361
Tumor
0.3
877
Tumor
0.3
525
Tumor
0.2
123
Tumor
0.2
661
Tumor
0.2
515
Tumor
0.2
313
Tumor
0.2
277
Tumor
0.2
213
Tumor
0.2
741
Tumor
0.2
817
Tumor
0.2
1015
Tumor
0.2
161
Tumor
0.2
221
Tumor
0.1
211
Tumor
0.1
257
Tumor
0.1
145
Tumor
0.1
615
Tumor
0.1
367
Tumor
0.1
724
Normal
0.1
342
Normal
0.1
341
Tumor
0.1
297
Tumor
0.1
867
Tumor
0.1
141
Tumor
0.0
851
Tumor
0.0
443
Tumor
0.0
641
Tumor
0.0
647
Tumor
0.0
461
Tumor
0.0
463
Tumor
0.0
135
Tumor
0.0
618
Normal
0.0
427
Tumor
0.0
114
Normal
0.0
375
Tumor
0.0
452
Normal
0.0
474
Normal
0.0
422
Normal
0.0
857
Tumor
0.0
535
Tumor
0.0
395
Tumor
0.0
642
Normal
0.0
431
Tumor
0.0
721
Tumor
-0.1
497
Tumor
-0.1
314
Normal
-0.1
873
Tumor
-0.1
744
Normal
-0.1
267
Tumor
-0.1
923
Tumor
-0.1
983
Tumor
-0.1
1028
Normal
-0.1
481
Tumor
-0.1
878
Normal
-0.1
538
Normal
-0.1
172
Normal
-0.1
545
Tumor
-0.1
366
Normal
-0.1
426
Normal
-0.1
125
Tumor
-0.1
435
Tumor
-0.1
223
Tumor
-0.1
616
Normal
-0.1
554
Normal
-0.1
981
Tumor
-0.1
365
Tumor
-0.1
433
Tumor
-0.1
466
Normal
-0.1
746
Normal
-0.1
925
Tumor
-0.1
272
Normal
-0.1
863
Tumor
-0.1
388
Normal
-0.1
368
Normal
-0.1
344
Normal
-0.2
278
Normal
-0.2
455
Tumor
-0.2
813
Tumor
-0.2
376
Normal
-0.2
196
Normal
-0.2
571
Tumor
-0.2
128
Normal
-0.2
192
Normal
-0.2
966
Normal
-0.2
392
Normal
-0.2
518
Normal
-0.2
191
Tumor
-0.2
214
Normal
-0.2
434
Normal
-0.2
756
Normal
-0.2
386
Normal
-0.2
567
Tumor
-0.2
111
Normal
-0.2
137
Tumor
-0.2
261
Tumor
-0.2
187
Tumor
-0.2
186
Normal
-0.2
492
Normal
-0.2
955
Tumor
-0.2
142
Normal
-0.2
362
Normal
-0.2
628
Normal
-0.2
671
Tumor
-0.2
162
Normal
-0.2
195
Tumor
-0.2
952
Normal
-0.2
468
Normal
-0.2
358
Normal
-0.2
436
Normal
-0.2
414
Normal
-0.2
124
Normal
-0.2
127
Tumor
-0.2
228
Normal
-0.2
956
Normal
-0.2
217
Tumor
-0.2
218
Normal
-0.2
138
Normal
-0.2
355
Tumor
-0.2
665
Tumor
-0.2
383
Tumor
-0.3
332
Normal
-0.3
148
Normal
-0.3
742
Normal
-0.3
617
Tumor
-0.3
738
Normal
-0.3
262
Normal
-0.3
298
Normal
-0.3
136
Normal
-0.3
472
Normal
-0.3
982
Normal
-0.3
1016
Normal
-0.3
132
Normal
-0.3
258
Normal
-0.3
146
Normal
-0.3
312
Normal
-0.3
268
Normal
-0.3
188
Normal
-0.3
778
Normal
-0.3
412
Normal
-0.3
924
Normal
-0.3
662
Normal
-0.3
416
Normal
-0.3
351
Tumor
-0.3
232
Normal
-0.3
1026
Normal
-0.3
396
Normal
-0.3
914
Normal
-0.4
283
Tumor
-0.4
222
Normal
-0.4
786
Normal
-0.4
456
Normal
-0.4
462
Normal
-0.4
874
Normal
-0.4
636
Normal
-0.4
696
Normal
-0.4
394
Normal
-0.4
421
Tumor
-0.4
126
Normal
-0.4
423
Tumor
-0.4
1032
Normal
-0.4
785
Tumor
-0.4
1014
Normal
-0.4
212
Normal
-0.4
448
Normal
-0.4
526
Normal
-0.4
913
Tumor
-0.4
494
Normal
-0.4
866
Normal
-0.4
686
Normal
-0.4
816
Normal
-0.4
635
Tumor
-0.4
484
Normal
-0.4
482
Normal
-0.4
698
Normal
-0.4
912
Normal
-0.4
464
Normal
-0.4
513
Tumor
-0.4
824
Normal
-0.4
546
Normal
-0.4
467
Tumor
-0.4
113
Tumor
-0.4
424
Normal
-0.4
814
Normal
-0.5
354
Normal
-0.5
968
Normal
-0.5
728
Normal
-0.5
384
Normal
-0.5
978
Normal
-0.5
944
Normal
-0.5
938
Normal
-0.5
447
Tumor
-0.5
884
Normal
-0.5
882
Normal
-0.5
428
Normal
-0.5
568
Normal
-0.5
943
Tumor
-0.5
574
Normal
-0.5
627
Tumor
-0.5
815
Tumor
-0.5
356
Normal
-0.5
1022
Normal
-0.5
818
Normal
-0.5
353
Tumor
-0.5
446
Normal
-0.5
714
Normal
-0.5
415
Tumor
-0.5
487
Tumor
-0.5
954
Normal
-0.5
723
Tumor
-0.5
716
Normal
-0.5
516
Normal
-0.5
536
Normal
-0.5
984
Normal
-0.5
1042
Normal
-0.5
488
Normal
-0.5
648
Normal
-0.5
352
Normal
-0.6
1044
Normal
-0.6
478
Normal
-0.6
922
Normal
-0.6
286
Normal
-0.6
534
Normal
-0.6
564
Normal
-0.6
328
Normal
-0.6
976
Normal
-0.6
917
Tumor
-0.6
964
Normal
-0.6
664
Normal
-0.6
695
Tumor
-0.6
432
Normal
-0.6
862
Normal
-0.6
284
Normal
-0.6
524
Normal
-0.6
364
Normal
-0.6
858
Normal
-0.6
224
Normal
-0.6
666
Normal
-0.7
444
Normal
-0.7
868
Normal
-0.7
852
Normal
-0.7
958
Normal
-0.7
918
Normal
-0.7
926
Normal
-0.7
311
Tumor
-0.7
864
Normal
-0.7
1045
Tumor
-0.7
722
Normal
-0.7
663
Tumor
-0.7
1046
Normal
-0.7
498
Normal
-0.7
572
Normal
-0.7
953
Tumor
-0.8
563
Tumor
-0.8
514
Normal
-0.8
672
Normal
-0.8
916
Normal
-0.8
558
Normal
-0.8
528
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
