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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGCL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
99.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
276.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
270.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
257.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
246.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
244.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
242.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
238.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
236.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
226.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
219.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
217.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
214.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
208.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
205.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
204.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
202.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
198.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
198.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
196.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
189.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
189.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
186.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
185.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
183.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
182.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
180.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
179.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
179.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
175.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
175.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
173.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
171.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
171.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
170.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
169.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
169.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
168.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
168.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
165.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
162.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
161.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
161.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
159.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
159.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
158.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
158.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
158.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
158.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
157.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
157.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
155.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
154.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
154.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
154.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
154.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
152.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
151.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
151.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
151.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
151.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
149.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
149.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
149.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
149.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
148.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
148.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
144.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
144.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
144.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
142.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
142.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
142.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
141.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
141.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
141.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
139.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
139.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
138.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
138.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
137.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
137.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
137.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
137.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
136.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
136.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
135.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
135.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
133.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
133.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
132.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
132.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
132.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
132.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
131.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
129.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
129.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
128.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
128.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
128.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
127.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
127.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
127.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
127.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
126.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
126.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
126.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
125.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
124.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
124.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
124.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
122.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
122.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
121.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
120.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
119.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
119.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
118.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
117.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
117.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
117.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
116.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
116.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
116.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
116.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
115.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
115.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
114.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
114.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
113.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
112.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
112.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
112.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
111.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
111.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
110.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
110.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
110.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
110.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
110.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
110.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
109.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
109.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
108.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
108.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
107.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
107.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
107.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
107.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
106.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
105.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
105.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
105.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
105.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
104.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
104.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
104.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
102.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
101.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
101.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
100.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
100.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
99.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
99.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
98.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
97.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
97.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
97.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
96.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
96.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
96.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
95.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
95.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
95.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
95.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
95.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
94.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
92.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
92.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
92.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
91.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
91.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
91.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
90.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
90.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
90.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
90.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
89.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
89.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
88.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
88.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
87.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
87.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
87.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
86.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
86.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
85.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
85.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
85.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
85.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
84.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
84.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
83.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
82.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
82.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
82.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
82.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
82.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
81.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
81.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
81.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
80.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
80.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
79.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
79.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
79.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
78.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
78.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
77.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
77.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
76.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
75.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
75.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
75.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
74.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
74.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
74.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
74.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
74.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
74.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
73.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
73.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
73.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
73.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
72.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
72.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
72.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
72.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
71.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
70.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
70.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
70.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
69.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
68.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
67.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
67.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
66.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
65.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
65.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
65.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
65.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
64.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
64.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
64.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
63.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
63.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
63.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
63.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
63.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
62.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
62.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
61.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
60.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
60.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
59.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
59.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
59.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
59.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
58.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
58.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
57.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
57.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
57.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
57.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
56.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
56.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
56.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
56.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
56.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
55.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
55.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
55.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
54.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
54.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
53.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
52.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
52.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
51.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
51.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
49.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
49.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
49.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
48.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
47.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
47.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
47.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
47.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
46.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
45.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
44.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
44.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
44.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
43.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
41.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
40.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
40.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
40.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
39.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
37.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
35.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGCL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
77.2
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
279.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
226.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
220.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
204.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
199.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
181.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
180.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
178.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
178.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
177.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
177.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
177.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
169.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
160.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
156.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
151.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
149.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
144.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
144.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
143.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
142.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
137.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
136.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
135.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
134.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
133.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
133.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
133.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
131.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
129.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
129.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
129.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
127.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
126.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
124.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
123.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
122.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
121.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
120.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
119.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
117.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
115.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
112.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
111.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
110.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
110.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
109.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
108.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
107.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
107.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
106.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
106.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
105.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
105.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
105.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
103.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
102.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
101.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
99.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
99.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
99.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
98.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
97.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
97.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
97.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
97.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
96.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
96.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
95.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
94.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
94.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
93.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
93.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
92.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
91.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
91.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
90.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
90.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
90.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
90.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
89.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
88.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
87.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
87.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
87.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
85.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
84.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
83.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
82.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
82.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
81.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
81.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
80.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
80.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
79.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
78.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
78.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
77.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
77.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
77.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
77.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
77.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
76.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
76.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
74.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
73.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
73.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
73.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
72.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
70.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
69.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
69.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
69.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
68.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
67.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
67.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
65.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
65.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
63.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
63.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
63.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
63.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
61.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
61.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
61.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
61.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
60.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
59.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
59.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
59.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
58.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
57.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
57.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
57.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
57.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
57.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
56.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
55.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
55.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
55.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
55.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
55.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
54.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
54.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
54.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
53.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
53.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
53.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
53.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
52.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
52.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
52.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
51.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
50.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
49.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
49.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
48.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
47.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
47.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
45.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
44.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
42.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
41.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
41.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
41.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
40.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
39.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
39.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
36.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
36.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
0.9
452
Normal
0.8
746
Normal
0.7
128
Normal
0.7
465
Tumor
0.7
744
Normal
0.6
742
Normal
0.6
636
Normal
0.5
488
Normal
0.5
412
Normal
0.5
1041
Tumor
0.5
938
Normal
0.5
698
Normal
0.5
342
Normal
0.4
466
Normal
0.4
546
Normal
0.4
882
Normal
0.4
186
Normal
0.4
738
Normal
0.4
1016
Normal
0.4
494
Normal
0.4
538
Normal
0.4
864
Normal
0.4
142
Normal
0.4
124
Normal
0.4
868
Normal
0.4
982
Normal
0.4
356
Normal
0.4
1014
Normal
0.4
462
Normal
0.4
436
Normal
0.4
858
Normal
0.4
534
Normal
0.4
1026
Normal
0.4
878
Normal
0.4
914
Normal
0.4
778
Normal
0.4
648
Normal
0.4
695
Tumor
0.4
1028
Normal
0.4
196
Normal
0.4
484
Normal
0.4
922
Normal
0.3
448
Normal
0.3
824
Normal
0.3
862
Normal
0.3
866
Normal
0.3
228
Normal
0.3
618
Normal
0.3
981
Tumor
0.3
976
Normal
0.3
286
Normal
0.3
394
Normal
0.3
172
Normal
0.3
686
Normal
0.3
874
Normal
0.3
111
Normal
0.3
214
Normal
0.3
376
Normal
0.3
955
Tumor
0.3
564
Normal
0.3
924
Normal
0.3
528
Normal
0.3
722
Normal
0.3
474
Normal
0.3
114
Normal
0.3
414
Normal
0.3
352
Normal
0.3
298
Normal
0.3
911
Tumor
0.3
388
Normal
0.3
723
Tumor
0.3
422
Normal
0.2
696
Normal
0.2
392
Normal
0.2
162
Normal
0.2
786
Normal
0.2
952
Normal
0.2
662
Normal
0.2
816
Normal
0.2
968
Normal
0.2
358
Normal
0.2
332
Normal
0.2
424
Normal
0.2
642
Normal
0.2
354
Normal
0.2
954
Normal
0.2
232
Normal
0.2
222
Normal
0.2
664
Normal
0.2
526
Normal
0.2
728
Normal
0.2
1032
Normal
0.2
472
Normal
0.2
568
Normal
0.2
756
Normal
0.2
984
Normal
0.2
428
Normal
0.2
364
Normal
0.2
492
Normal
0.2
1022
Normal
0.2
284
Normal
0.2
344
Normal
0.2
966
Normal
0.2
482
Normal
0.2
464
Normal
0.2
852
Normal
0.2
312
Normal
0.2
714
Normal
0.2
278
Normal
0.2
132
Normal
0.2
944
Normal
0.2
716
Normal
0.1
912
Normal
0.1
915
Tumor
0.1
478
Normal
0.1
446
Normal
0.1
138
Normal
0.1
426
Normal
0.1
212
Normal
0.1
554
Normal
0.1
423
Tumor
0.1
741
Tumor
0.1
818
Normal
0.1
666
Normal
0.1
867
Tumor
0.1
755
Tumor
0.1
231
Tumor
0.1
964
Normal
0.1
224
Normal
0.1
518
Normal
0.1
314
Normal
0.1
272
Normal
0.1
574
Normal
0.1
937
Tumor
0.1
468
Normal
0.1
328
Normal
0.1
432
Normal
0.1
926
Normal
0.1
1046
Normal
0.1
148
Normal
0.1
487
Tumor
0.1
558
Normal
0.1
572
Normal
0.1
416
Normal
0.0
1027
Tumor
0.0
262
Normal
0.0
477
Tumor
0.0
113
Tumor
0.0
146
Normal
0.0
396
Normal
0.0
563
Tumor
0.0
884
Normal
0.0
978
Normal
0.0
366
Normal
0.0
918
Normal
0.0
1044
Normal
0.0
672
Normal
0.0
916
Normal
0.0
258
Normal
0.0
136
Normal
0.0
524
Normal
0.0
516
Normal
0.0
1042
Normal
0.0
257
Tumor
0.0
362
Normal
-0.1
628
Normal
-0.1
956
Normal
-0.1
368
Normal
-0.1
1045
Tumor
-0.1
386
Normal
-0.1
958
Normal
-0.1
218
Normal
-0.1
126
Normal
-0.1
456
Normal
-0.1
616
Normal
-0.1
112
Tumor
-0.1
365
Tumor
-0.1
627
Tumor
-0.1
185
Tumor
-0.1
261
Tumor
-0.1
137
Tumor
-0.2
384
Normal
-0.2
268
Normal
-0.2
434
Normal
-0.2
536
Normal
-0.2
514
Normal
-0.2
721
Tumor
-0.2
857
Tumor
-0.2
1015
Tumor
-0.2
341
Tumor
-0.2
188
Normal
-0.2
444
Normal
-0.3
615
Tumor
-0.3
513
Tumor
-0.3
141
Tumor
-0.3
498
Normal
-0.3
635
Tumor
-0.3
451
Tumor
-0.4
443
Tumor
-0.4
571
Tumor
-0.4
192
Normal
-0.4
313
Tumor
-0.4
685
Tumor
-0.4
327
Tumor
-0.5
861
Tumor
-0.5
913
Tumor
-0.5
127
Tumor
-0.5
361
Tumor
-0.5
873
Tumor
-0.5
727
Tumor
-0.5
415
Tumor
-0.5
267
Tumor
-0.5
515
Tumor
-0.5
461
Tumor
-0.5
713
Tumor
-0.6
383
Tumor
-0.6
421
Tumor
-0.6
883
Tumor
-0.6
135
Tumor
-0.6
481
Tumor
-0.6
387
Tumor
-0.6
145
Tumor
-0.6
435
Tumor
-0.6
411
Tumor
-0.7
227
Tumor
-0.7
161
Tumor
-0.7
557
Tumor
-0.7
413
Tumor
-0.7
217
Tumor
-0.7
823
Tumor
-0.7
433
Tumor
-0.7
223
Tumor
-0.7
357
Tumor
-0.7
951
Tumor
-0.7
171
Tumor
-0.7
745
Tumor
-0.8
483
Tumor
-0.8
953
Tumor
-0.8
353
Tumor
-0.8
814
Normal
-0.8
447
Tumor
-0.8
785
Tumor
-0.8
425
Tumor
-0.8
431
Tumor
-0.8
851
Tumor
-0.9
1043
Tumor
-0.9
617
Tumor
-0.9
491
Tumor
-0.9
195
Tumor
-0.9
123
Tumor
-0.9
375
Tumor
-0.9
355
Tumor
-0.9
363
Tumor
-0.9
497
Tumor
-0.9
367
Tumor
-0.9
493
Tumor
-0.9
943
Tumor
-1.0
977
Tumor
-1.0
777
Tumor
-1.0
865
Tumor
-1.0
663
Tumor
-1.0
395
Tumor
-1.0
917
Tumor
-1.0
881
Tumor
-1.0
665
Tumor
-1.0
445
Tumor
-1.0
1021
Tumor
-1.0
191
Tumor
-1.1
187
Tumor
-1.1
923
Tumor
-1.1
567
Tumor
-1.1
715
Tumor
-1.1
863
Tumor
-1.1
467
Tumor
-1.1
533
Tumor
-1.1
473
Tumor
-1.1
393
Tumor
-1.1
963
Tumor
-1.1
297
Tumor
-1.2
463
Tumor
-1.2
921
Tumor
-1.2
1013
Tumor
-1.2
573
Tumor
-1.2
125
Tumor
-1.2
471
Tumor
-1.2
641
Tumor
-1.2
391
Tumor
-1.2
535
Tumor
-1.2
427
Tumor
-1.2
311
Tumor
-1.3
221
Tumor
-1.3
877
Tumor
-1.3
737
Tumor
-1.3
553
Tumor
-1.3
213
Tumor
-1.3
517
Tumor
-1.3
967
Tumor
-1.3
271
Tumor
-1.3
975
Tumor
-1.3
813
Tumor
-1.3
1025
Tumor
-1.4
1031
Tumor
-1.4
817
Tumor
-1.4
455
Tumor
-1.4
147
Tumor
-1.4
815
Tumor
-1.4
697
Tumor
-1.4
527
Tumor
-1.4
647
Tumor
-1.5
537
Tumor
-1.5
277
Tumor
-1.5
343
Tumor
-1.5
525
Tumor
-1.6
743
Tumor
-1.6
283
Tumor
-1.7
983
Tumor
-1.7
351
Tumor
-1.7
331
Tumor
-1.7
965
Tumor
-1.7
957
Tumor
-1.7
724
Normal
-1.8
385
Tumor
-1.9
671
Tumor
-1.9
523
Tumor
-2.0
545
Tumor
-2.0
285
Tumor
-2.0
211
Tumor
-2.1
131
Tumor
-2.1
661
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.