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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB29 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
49.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.8
1027
Tumor
1.3
957
Tumor
1.2
445
Tumor
1.0
1013
Tumor
1.0
257
Tumor
1.0
523
Tumor
1.0
851
Tumor
0.9
921
Tumor
0.9
537
Tumor
0.9
471
Tumor
0.8
685
Tumor
0.8
527
Tumor
0.7
557
Tumor
0.7
483
Tumor
0.7
745
Tumor
0.7
963
Tumor
0.7
695
Tumor
0.7
211
Tumor
0.7
857
Tumor
0.6
481
Tumor
0.6
1043
Tumor
0.6
553
Tumor
0.6
867
Tumor
0.5
125
Tumor
0.5
477
Tumor
0.5
1025
Tumor
0.5
713
Tumor
0.5
491
Tumor
0.5
515
Tumor
0.5
435
Tumor
0.4
131
Tumor
0.4
721
Tumor
0.4
953
Tumor
0.4
533
Tumor
0.4
1021
Tumor
0.4
944
Normal
0.4
1031
Tumor
0.4
915
Tumor
0.4
954
Normal
0.4
493
Tumor
0.3
525
Tumor
0.3
191
Tumor
0.3
283
Tumor
0.3
415
Tumor
0.3
421
Tumor
0.3
881
Tumor
0.3
1044
Normal
0.3
861
Tumor
0.3
952
Normal
0.3
723
Tumor
0.3
357
Tumor
0.3
513
Tumor
0.3
221
Tumor
0.3
478
Normal
0.3
554
Normal
0.3
984
Normal
0.2
862
Normal
0.2
818
Normal
0.2
922
Normal
0.2
951
Tumor
0.2
364
Normal
0.2
375
Tumor
0.2
572
Normal
0.2
534
Normal
0.2
938
Normal
0.2
641
Tumor
0.2
715
Tumor
0.2
567
Tumor
0.2
823
Tumor
0.2
868
Normal
0.2
714
Normal
0.2
817
Tumor
0.2
955
Tumor
0.2
1045
Tumor
0.2
488
Normal
0.2
135
Tumor
0.2
1014
Normal
0.2
455
Tumor
0.2
716
Normal
0.2
696
Normal
0.2
517
Tumor
0.1
473
Tumor
0.1
698
Normal
0.1
975
Tumor
0.1
968
Normal
0.1
923
Tumor
0.1
741
Tumor
0.1
223
Tumor
0.1
546
Normal
0.1
911
Tumor
0.1
697
Tumor
0.1
524
Normal
0.1
412
Normal
0.1
727
Tumor
0.1
271
Tumor
0.1
526
Normal
0.1
313
Tumor
0.1
977
Tumor
0.1
528
Normal
0.1
983
Tumor
0.1
142
Normal
0.1
355
Tumor
0.1
1046
Normal
0.1
617
Tumor
0.1
494
Normal
0.1
224
Normal
0.0
356
Normal
0.0
943
Tumor
0.0
864
Normal
0.0
956
Normal
0.0
863
Tumor
0.0
376
Normal
0.0
187
Tumor
0.0
538
Normal
0.0
545
Tumor
0.0
913
Tumor
0.0
472
Normal
0.0
1026
Normal
0.0
514
Normal
0.0
686
Normal
0.0
342
Normal
0.0
926
Normal
0.0
737
Tumor
0.0
824
Normal
0.0
882
Normal
0.0
1032
Normal
0.0
482
Normal
0.0
484
Normal
0.0
866
Normal
0.0
448
Normal
0.0
424
Normal
0.0
978
Normal
0.0
277
Tumor
0.0
615
Tumor
0.0
433
Tumor
0.0
636
Normal
0.0
148
Normal
0.0
341
Tumor
0.0
616
Normal
0.0
536
Normal
0.0
722
Normal
0.0
647
Tumor
0.0
463
Tumor
0.0
964
Normal
0.0
785
Tumor
0.0
352
Normal
0.0
286
Normal
0.0
724
Normal
-0.1
777
Tumor
-0.1
474
Normal
-0.1
916
Normal
-0.1
746
Normal
-0.1
1015
Tumor
-0.1
982
Normal
-0.1
284
Normal
-0.1
361
Tumor
-0.1
354
Normal
-0.1
368
Normal
-0.1
925
Tumor
-0.1
1016
Normal
-0.1
924
Normal
-0.1
416
Normal
-0.1
912
Normal
-0.1
392
Normal
-0.1
816
Normal
-0.1
778
Normal
-0.1
756
Normal
-0.1
563
Tumor
-0.1
852
Normal
-0.1
462
Normal
-0.1
328
Normal
-0.1
744
Normal
-0.1
786
Normal
-0.1
648
Normal
-0.1
137
Tumor
-0.1
965
Tumor
-0.1
311
Tumor
-0.1
492
Normal
-0.1
393
Tumor
-0.1
966
Normal
-0.1
672
Normal
-0.1
873
Tumor
-0.1
878
Normal
-0.1
128
Normal
-0.1
516
Normal
-0.1
426
Normal
-0.1
742
Normal
-0.1
1042
Normal
-0.1
917
Tumor
-0.1
1041
Tumor
-0.1
446
Normal
-0.1
228
Normal
-0.2
743
Tumor
-0.2
728
Normal
-0.2
461
Tumor
-0.2
498
Normal
-0.2
212
Normal
-0.2
261
Tumor
-0.2
865
Tumor
-0.2
414
Normal
-0.2
447
Tumor
-0.2
431
Tumor
-0.2
883
Tumor
-0.2
571
Tumor
-0.2
918
Normal
-0.2
558
Normal
-0.2
443
Tumor
-0.2
425
Tumor
-0.2
958
Normal
-0.2
663
Tumor
-0.2
113
Tumor
-0.2
535
Tumor
-0.2
1022
Normal
-0.2
436
Normal
-0.2
738
Normal
-0.2
914
Normal
-0.2
343
Tumor
-0.2
884
Normal
-0.2
384
Normal
-0.2
196
Normal
-0.2
518
Normal
-0.2
162
Normal
-0.2
466
Normal
-0.2
877
Tumor
-0.2
666
Normal
-0.2
111
Normal
-0.2
858
Normal
-0.2
422
Normal
-0.2
358
Normal
-0.2
981
Tumor
-0.2
185
Tumor
-0.2
362
Normal
-0.3
112
Tumor
-0.3
467
Tumor
-0.3
387
Tumor
-0.3
664
Normal
-0.3
186
Normal
-0.3
213
Tumor
-0.3
428
Normal
-0.3
297
Tumor
-0.3
327
Tumor
-0.3
298
Normal
-0.3
344
Normal
-0.3
452
Normal
-0.3
976
Normal
-0.3
665
Tumor
-0.3
146
Normal
-0.3
568
Normal
-0.3
451
Tumor
-0.3
1028
Normal
-0.3
172
Normal
-0.3
123
Tumor
-0.3
124
Normal
-0.3
145
Tumor
-0.3
385
Tumor
-0.3
874
Normal
-0.3
388
Normal
-0.3
367
Tumor
-0.3
218
Normal
-0.3
312
Normal
-0.3
464
Normal
-0.3
366
Normal
-0.3
814
Normal
-0.3
268
Normal
-0.3
444
Normal
-0.3
642
Normal
-0.4
618
Normal
-0.4
468
Normal
-0.4
456
Normal
-0.4
662
Normal
-0.4
396
Normal
-0.4
813
Tumor
-0.4
332
Normal
-0.4
227
Tumor
-0.4
272
Normal
-0.4
188
Normal
-0.4
232
Normal
-0.4
126
Normal
-0.4
564
Normal
-0.4
365
Tumor
-0.4
214
Normal
-0.4
262
Normal
-0.4
136
Normal
-0.4
114
Normal
-0.4
331
Tumor
-0.4
815
Tumor
-0.4
127
Tumor
-0.4
967
Tumor
-0.4
574
Normal
-0.4
755
Tumor
-0.4
171
Tumor
-0.4
432
Normal
-0.4
573
Tumor
-0.4
628
Normal
-0.4
217
Tumor
-0.4
434
Normal
-0.4
258
Normal
-0.5
413
Tumor
-0.5
161
Tumor
-0.5
497
Tumor
-0.5
394
Normal
-0.5
222
Normal
-0.5
937
Tumor
-0.5
278
Normal
-0.5
138
Normal
-0.5
363
Tumor
-0.5
395
Tumor
-0.6
353
Tumor
-0.6
386
Normal
-0.6
195
Tumor
-0.6
132
Normal
-0.6
465
Tumor
-0.6
192
Normal
-0.6
661
Tumor
-0.6
423
Tumor
-0.6
487
Tumor
-0.6
627
Tumor
-0.6
231
Tumor
-0.7
635
Tumor
-0.7
314
Normal
-0.7
383
Tumor
-0.7
351
Tumor
-0.7
391
Tumor
-0.7
285
Tumor
-0.7
141
Tumor
-0.8
267
Tumor
-0.8
411
Tumor
-0.8
671
Tumor
-0.8
427
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
