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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
236.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
228.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
116.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
113.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
109.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
89.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
84.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
66.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
65.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
58.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
56.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
53.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
50.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
49.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
47.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
47.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
47.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
45.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
44.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
43.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
42.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
42.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
38.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
32.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBP1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.6
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
407.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
318.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
273.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
222.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
204.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
199.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
185.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
174.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
139.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
119.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
111.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
106.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
104.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
102.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
94.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
93.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
89.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
88.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
83.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
82.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
67.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
65.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
61.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
60.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
59.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
58.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
54.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
54.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
53.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
50.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
50.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
47.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
45.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
44.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
43.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
43.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
43.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
42.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
41.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
41.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
38.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
32.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
30.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
30.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.8
966
Normal
1.6
978
Normal
1.6
434
Normal
1.5
724
Normal
1.5
262
Normal
1.5
861
Tumor
1.5
383
Tumor
1.3
1015
Tumor
1.2
211
Tumor
1.2
213
Tumor
1.1
914
Normal
1.1
451
Tumor
1.0
1031
Tumor
1.0
188
Normal
1.0
524
Normal
1.0
113
Tumor
0.9
915
Tumor
0.9
535
Tumor
0.9
492
Normal
0.8
917
Tumor
0.7
432
Normal
0.7
867
Tumor
0.7
536
Normal
0.7
955
Tumor
0.7
1043
Tumor
0.7
516
Normal
0.6
916
Normal
0.6
366
Normal
0.6
217
Tumor
0.6
686
Normal
0.5
814
Normal
0.5
386
Normal
0.5
514
Normal
0.5
922
Normal
0.5
126
Normal
0.5
528
Normal
0.4
344
Normal
0.4
1044
Normal
0.4
362
Normal
0.4
456
Normal
0.4
956
Normal
0.4
721
Tumor
0.4
924
Normal
0.4
738
Normal
0.4
498
Normal
0.4
723
Tumor
0.4
862
Normal
0.4
698
Normal
0.4
858
Normal
0.4
375
Tumor
0.4
954
Normal
0.3
1022
Normal
0.3
943
Tumor
0.3
926
Normal
0.3
487
Tumor
0.3
663
Tumor
0.3
258
Normal
0.3
628
Normal
0.3
467
Tumor
0.3
938
Normal
0.3
756
Normal
0.3
1028
Normal
0.3
666
Normal
0.3
468
Normal
0.3
114
Normal
0.3
416
Normal
0.3
982
Normal
0.3
448
Normal
0.3
685
Tumor
0.2
573
Tumor
0.2
494
Normal
0.2
716
Normal
0.2
823
Tumor
0.2
627
Tumor
0.2
261
Tumor
0.2
1046
Normal
0.2
385
Tumor
0.2
284
Normal
0.2
272
Normal
0.2
212
Normal
0.2
952
Normal
0.2
538
Normal
0.2
1026
Normal
0.2
953
Tumor
0.2
478
Normal
0.2
857
Tumor
0.2
884
Normal
0.1
851
Tumor
0.1
742
Normal
0.1
224
Normal
0.1
384
Normal
0.1
1042
Normal
0.1
786
Normal
0.1
146
Normal
0.1
882
Normal
0.1
554
Normal
0.1
883
Tumor
0.1
415
Tumor
0.1
852
Normal
0.1
218
Normal
0.1
964
Normal
0.1
557
Tumor
0.1
518
Normal
0.1
1014
Normal
0.1
327
Tumor
0.1
138
Normal
0.1
546
Normal
0.1
396
Normal
0.1
976
Normal
0.1
728
Normal
0.1
1027
Tumor
0.1
755
Tumor
0.1
283
Tumor
0.1
191
Tumor
0.1
488
Normal
0.1
332
Normal
0.1
662
Normal
0.1
1016
Normal
0.0
128
Normal
0.0
142
Normal
0.0
824
Normal
0.0
958
Normal
0.0
141
Tumor
0.0
298
Normal
0.0
1032
Normal
0.0
387
Tumor
0.0
493
Tumor
0.0
984
Normal
0.0
778
Normal
0.0
286
Normal
0.0
944
Normal
0.0
816
Normal
0.0
977
Tumor
0.0
722
Normal
0.0
696
Normal
0.0
918
Normal
0.0
446
Normal
0.0
968
Normal
0.0
558
Normal
0.0
912
Normal
0.0
963
Tumor
0.0
343
Tumor
0.0
452
Normal
0.0
214
Normal
0.0
228
Normal
0.0
714
Normal
0.0
482
Normal
0.0
137
Tumor
0.0
664
Normal
0.0
135
Tumor
0.0
1013
Tumor
-0.1
864
Normal
-0.1
818
Normal
-0.1
534
Normal
-0.1
866
Normal
-0.1
185
Tumor
-0.1
376
Normal
-0.1
741
Tumor
-0.1
358
Normal
-0.1
364
Normal
-0.1
367
Tumor
-0.1
111
Normal
-0.1
268
Normal
-0.1
352
Normal
-0.1
356
Normal
-0.1
642
Normal
-0.1
865
Tumor
-0.1
124
Normal
-0.1
957
Tumor
-0.1
196
Normal
-0.1
422
Normal
-0.1
391
Tumor
-0.1
136
Normal
-0.1
568
Normal
-0.1
342
Normal
-0.1
232
Normal
-0.1
412
Normal
-0.1
195
Tumor
-0.1
574
Normal
-0.1
365
Tumor
-0.1
427
Tumor
-0.1
1045
Tumor
-0.1
447
Tumor
-0.1
648
Normal
-0.1
526
Normal
-0.1
878
Normal
-0.1
481
Tumor
-0.1
444
Normal
-0.1
513
Tumor
-0.1
413
Tumor
-0.1
874
Normal
-0.2
484
Normal
-0.2
414
Normal
-0.2
746
Normal
-0.2
392
Normal
-0.2
981
Tumor
-0.2
672
Normal
-0.2
425
Tumor
-0.2
172
Normal
-0.2
222
Normal
-0.2
426
Normal
-0.2
466
Normal
-0.2
187
Tumor
-0.2
388
Normal
-0.2
328
Normal
-0.2
462
Normal
-0.2
925
Tumor
-0.2
465
Tumor
-0.2
785
Tumor
-0.2
474
Normal
-0.2
615
Tumor
-0.2
472
Normal
-0.2
227
Tumor
-0.2
616
Normal
-0.2
523
Tumor
-0.2
491
Tumor
-0.2
744
Normal
-0.2
431
Tumor
-0.2
727
Tumor
-0.2
145
Tumor
-0.3
572
Normal
-0.3
517
Tumor
-0.3
873
Tumor
-0.3
777
Tumor
-0.3
314
Normal
-0.3
975
Tumor
-0.3
636
Normal
-0.3
278
Normal
-0.3
525
Tumor
-0.3
937
Tumor
-0.3
464
Normal
-0.3
564
Normal
-0.3
497
Tumor
-0.3
424
Normal
-0.3
537
Tumor
-0.3
515
Tumor
-0.3
471
Tumor
-0.3
192
Normal
-0.3
368
Normal
-0.3
913
Tumor
-0.3
1041
Tumor
-0.3
186
Normal
-0.3
868
Normal
-0.3
483
Tumor
-0.4
428
Normal
-0.4
355
Tumor
-0.4
665
Tumor
-0.4
354
Normal
-0.4
455
Tumor
-0.4
715
Tumor
-0.4
132
Normal
-0.4
461
Tumor
-0.4
571
Tumor
-0.4
148
Normal
-0.4
951
Tumor
-0.4
697
Tumor
-0.4
311
Tumor
-0.5
353
Tumor
-0.5
127
Tumor
-0.5
745
Tumor
-0.5
695
Tumor
-0.5
563
Tumor
-0.5
527
Tumor
-0.5
923
Tumor
-0.5
618
Normal
-0.5
737
Tumor
-0.5
863
Tumor
-0.5
423
Tumor
-0.5
393
Tumor
-0.5
231
Tumor
-0.6
433
Tumor
-0.6
983
Tumor
-0.6
421
Tumor
-0.6
223
Tumor
-0.6
477
Tumor
-0.6
463
Tumor
-0.6
361
Tumor
-0.6
813
Tumor
-0.6
617
Tumor
-0.6
297
Tumor
-0.6
435
Tumor
-0.6
341
Tumor
-0.7
123
Tumor
-0.7
815
Tumor
-0.7
647
Tumor
-0.7
285
Tumor
-0.7
965
Tumor
-0.7
161
Tumor
-0.7
411
Tumor
-0.7
394
Normal
-0.7
436
Normal
-0.7
267
Tumor
-0.7
112
Tumor
-0.7
443
Tumor
-0.8
967
Tumor
-0.8
635
Tumor
-0.8
395
Tumor
-0.8
312
Normal
-0.8
545
Tumor
-0.8
313
Tumor
-0.8
1021
Tumor
-0.8
881
Tumor
-0.8
162
Normal
-0.8
357
Tumor
-0.8
277
Tumor
-0.8
533
Tumor
-0.9
125
Tumor
-0.9
473
Tumor
-0.9
171
Tumor
-0.9
1025
Tumor
-0.9
553
Tumor
-0.9
671
Tumor
-0.9
147
Tumor
-0.9
567
Tumor
-0.9
363
Tumor
-1.0
911
Tumor
-1.0
257
Tumor
-1.0
221
Tumor
-1.0
445
Tumor
-1.0
641
Tumor
-1.0
713
Tumor
-1.1
271
Tumor
-1.1
817
Tumor
-1.1
921
Tumor
-1.2
131
Tumor
-1.3
877
Tumor
-1.3
351
Tumor
-1.4
331
Tumor
-1.5
743
Tumor
-2.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
