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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
36.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
231
Samples
Sample
Description
TPM
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
2.4
965
Tumor
2.4
311
Tumor
2.1
915
Tumor
1.8
125
Tumor
1.6
365
Tumor
1.5
491
Tumor
1.2
343
Tumor
1.1
385
Tumor
1.1
395
Tumor
1.0
713
Tumor
1.0
697
Tumor
1.0
375
Tumor
0.9
877
Tumor
0.9
447
Tumor
0.9
195
Tumor
0.8
815
Tumor
0.8
384
Normal
0.8
358
Normal
0.8
328
Normal
0.7
354
Normal
0.7
283
Tumor
0.7
342
Normal
0.7
816
Normal
0.6
912
Normal
0.6
467
Tumor
0.6
536
Normal
0.6
352
Normal
0.6
478
Normal
0.6
978
Normal
0.6
778
Normal
0.6
916
Normal
0.5
136
Normal
0.5
353
Tumor
0.5
535
Tumor
0.5
344
Normal
0.5
138
Normal
0.5
727
Tumor
0.5
538
Normal
0.5
123
Tumor
0.5
191
Tumor
0.5
231
Tumor
0.4
363
Tumor
0.4
1016
Normal
0.4
545
Tumor
0.4
722
Normal
0.4
192
Normal
0.4
217
Tumor
0.4
982
Normal
0.4
126
Normal
0.4
268
Normal
0.3
498
Normal
0.3
135
Tumor
0.3
455
Tumor
0.3
124
Normal
0.3
954
Normal
0.3
461
Tumor
0.3
211
Tumor
0.3
141
Tumor
0.2
368
Normal
0.2
554
Normal
0.2
976
Normal
0.2
132
Normal
0.2
482
Normal
0.2
1046
Normal
0.2
286
Normal
0.2
1044
Normal
0.2
744
Normal
0.2
364
Normal
0.2
213
Tumor
0.2
366
Normal
0.2
943
Tumor
0.2
223
Tumor
0.2
464
Normal
0.2
137
Tumor
0.1
396
Normal
0.1
696
Normal
0.1
142
Normal
0.1
716
Normal
0.1
394
Normal
0.1
196
Normal
0.1
351
Tumor
0.1
262
Normal
0.1
534
Normal
0.1
224
Normal
0.1
1042
Normal
0.1
145
Tumor
0.1
938
Normal
0.1
813
Tumor
0.1
472
Normal
0.1
448
Normal
0.1
386
Normal
0.1
331
Tumor
0.1
383
Tumor
0.1
111
Normal
0.0
742
Normal
0.0
341
Tumor
0.0
966
Normal
0.0
146
Normal
0.0
452
Normal
0.0
1014
Normal
0.0
983
Tumor
0.0
392
Normal
0.0
488
Normal
0.0
474
Normal
0.0
222
Normal
0.0
823
Tumor
0.0
526
Normal
0.0
332
Normal
0.0
212
Normal
0.0
128
Normal
0.0
494
Normal
0.0
882
Normal
0.0
528
Normal
0.0
884
Normal
0.0
272
Normal
0.0
131
Tumor
0.0
698
Normal
0.0
232
Normal
0.0
492
Normal
0.0
686
Normal
-0.1
466
Normal
-0.1
188
Normal
-0.1
714
Normal
-0.1
546
Normal
-0.1
721
Tumor
-0.1
738
Normal
-0.1
868
Normal
-0.1
357
Tumor
-0.1
356
Normal
-0.1
362
Normal
-0.1
388
Normal
-0.1
186
Normal
-0.1
926
Normal
-0.1
258
Normal
-0.1
817
Tumor
-0.1
756
Normal
-0.1
456
Normal
-0.1
968
Normal
-0.1
867
Tumor
-0.1
963
Tumor
-0.1
172
Normal
-0.1
861
Tumor
-0.1
862
Normal
-0.1
162
Normal
-0.1
214
Normal
-0.1
462
Normal
-0.2
284
Normal
-0.2
367
Tumor
-0.2
412
Normal
-0.2
415
Tumor
-0.2
416
Normal
-0.2
864
Normal
-0.2
257
Tumor
-0.2
185
Tumor
-0.2
1028
Normal
-0.2
874
Normal
-0.2
984
Normal
-0.2
114
Normal
-0.2
1026
Normal
-0.2
918
Normal
-0.2
914
Normal
-0.2
468
Normal
-0.2
723
Tumor
-0.2
391
Tumor
-0.2
1045
Tumor
-0.2
361
Tumor
-0.2
463
Tumor
-0.3
964
Normal
-0.3
481
Tumor
-0.3
1032
Normal
-0.3
148
Normal
-0.3
728
Normal
-0.3
524
Normal
-0.3
493
Tumor
-0.3
977
Tumor
-0.3
958
Normal
-0.3
755
Tumor
-0.3
376
Normal
-0.3
227
Tumor
-0.3
327
Tumor
-0.3
922
Normal
-0.3
863
Tumor
-0.3
685
Tumor
-0.3
873
Tumor
-0.4
218
Normal
-0.4
924
Normal
-0.4
527
Tumor
-0.4
298
Normal
-0.4
261
Tumor
-0.4
187
Tumor
-0.4
746
Normal
-0.4
228
Normal
-0.4
975
Tumor
-0.4
866
Normal
-0.4
952
Normal
-0.4
312
Normal
-0.4
355
Tumor
-0.4
171
Tumor
-0.4
785
Tumor
-0.4
514
Normal
-0.4
484
Normal
-0.5
715
Tumor
-0.5
878
Normal
-0.5
553
Tumor
-0.5
314
Normal
-0.5
777
Tumor
-0.5
786
Normal
-0.5
113
Tumor
-0.5
465
Tumor
-0.5
127
Tumor
-0.5
1043
Tumor
-0.5
267
Tumor
-0.5
451
Tumor
-0.5
814
Normal
-0.5
525
Tumor
-0.5
724
Normal
-0.5
297
Tumor
-0.5
913
Tumor
-0.5
865
Tumor
-0.5
518
Normal
-0.5
956
Normal
-0.6
883
Tumor
-0.6
411
Tumor
-0.6
857
Tumor
-0.6
695
Tumor
-0.6
161
Tumor
-0.6
741
Tumor
-0.7
537
Tumor
-0.7
921
Tumor
-0.7
483
Tumor
-0.7
278
Normal
-0.7
1031
Tumor
-0.7
1022
Normal
-0.7
497
Tumor
-0.7
516
Normal
-0.7
923
Tumor
-0.7
112
Tumor
-0.7
221
Tumor
-0.8
967
Tumor
-0.8
271
Tumor
-0.8
881
Tumor
-0.8
477
Tumor
-0.8
387
Tumor
-0.8
745
Tumor
-0.9
533
Tumor
-0.9
858
Normal
-0.9
737
Tumor
-0.9
851
Tumor
-0.9
852
Normal
-0.9
513
Tumor
-0.9
925
Tumor
-0.9
1015
Tumor
-1.0
955
Tumor
-1.0
393
Tumor
-1.0
517
Tumor
-1.0
471
Tumor
-1.0
743
Tumor
-1.0
944
Normal
-1.0
147
Tumor
-1.0
981
Tumor
-1.1
1013
Tumor
-1.1
824
Normal
-1.1
473
Tumor
-1.1
1027
Tumor
-1.1
1025
Tumor
-1.1
487
Tumor
-1.1
1021
Tumor
-1.2
515
Tumor
-1.3
313
Tumor
-1.3
911
Tumor
-1.3
1041
Tumor
-1.3
951
Tumor
-1.3
277
Tumor
-1.3
285
Tumor
-1.4
957
Tumor
-1.4
818
Normal
-1.5
937
Tumor
-1.5
953
Tumor
-1.6
523
Tumor
-1.7
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
