HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA Brain:136.1 nTPM
GTEx:12.5 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:29.8 nTPM
Mouse:44.5 nTPM
Allen mouse:4.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 136.1
Sample id Sample description nTPM
Hippocampus
nTPM: 29.0
2529 Female, age 94, left hemisphere 42.5
1898 Male, age 80, left hemisphere 40.6
2621 Female, age 67, right hemisphere 28.6
2148 Female, age 91, left hemisphere 27.3
1911 Female, age 85, right hemisphere 20.8
1855 Male, age 76, left hemisphere 14.6
Dentate gyrus
nTPM: 26.2
2246 Female, age 85, both hemispheres 33.6
2531 Female, age 67, both hemispheres 30.3
2528 Male, age 74, both hemispheres 27.0
1927 Female, age 91, both hemispheres 25.8
2530 Female, age 94, left hemisphere 23.7
2010 Male, age 76, both hemispheres 16.5
Entorhinal gyrus
nTPM: 102.3
2764 Male, age 80, right hemisphere 131.6
2613 Female, age 94, left hemisphere 127.5
2686 Male, age 75, right hemisphere 117.2
1787 Male, age 76, left hemisphere 92.9
1938 Female, age 85, left hemisphere 90.9
2117 Female, age 91, right hemisphere 53.6
Hippocampus, CA1
nTPM: 25.7
2082 Female, age 91, right hemisphere 39.3
2527 Male, age 74, both hemispheres 29.5
2749 Male, age 80, left hemisphere 22.6
1873 Female, age 85, both hemispheres 21.6
2045 Male, age 76, both hemispheres 15.2
Hippocampus, CA2
nTPM: 47.0
1940 Female, age 85, left hemisphere 85.5
2437 Female, age 94, left hemisphere 71.7
2113 Female, age 91, right hemisphere 47.1
1892 Male, age 76, both hemispheres 34.0
2249 Male, age 74, both hemispheres 22.7
1963 Male, age 80, left hemisphere 21.0
Hippocampus, CA3
nTPM: 26.5
2861 Female, age 67, both hemispheres 34.9
1891 Female, age 85, both hemispheres 32.7
1867 Male, age 76, both hemispheres 26.7
2436 Male, age 74, both hemispheres 23.4
2620 Female, age 94, left hemisphere 21.9
2137 Male, age 80, left hemisphere 19.2
Parahippocampal cortex
nTPM: 110.3
2622 Female, age 67, right hemisphere 161.3
1850 Male, age 80, both hemispheres 138.3
2693 Female, age 94, both hemispheres 131.1
1990 Female, age 91, right hemisphere 118.1
2532 Female, age 72, left hemisphere 117.0
2245 Female, age 91, both hemispheres 103.4
1933 Female, age 85, both hemispheres 101.9
2692 Male, age 74, both hemispheres 81.0
2250 Female, age 67, right hemisphere 80.5
2018 Male, age 76, both hemispheres 70.2
Perirhinal gyrus
nTPM: 136.1
1794 Male, age 80, right hemisphere 183.7
1841 Female, age 85, right hemisphere 155.2
1847 Female, age 91, left hemisphere 124.8
2848 Male, age 76, right hemisphere 119.2
2521 Female, age 94, right hemisphere 97.3
Subiculum
nTPM: 49.4
1977 Female, age 85, both hemispheres 79.3
2619 Male, age 74, both hemispheres 76.6
2438 Female, age 94, left hemisphere 52.7
1901 Male, age 80, both hemispheres 35.7
2729 Female, age 91, right hemisphere 28.0
2042 Male, age 76, both hemispheres 23.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.5
Samples: 197

Max nTPM: 123.6
Min nTPM: 1.1
Std nTPM: 18.1
Median nTPM: 6.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 123.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 114.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 103.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 82.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 80.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 68.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 61.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 60.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 56.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 42.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 40.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.0
FF:10153-102I9 76 years, female 34.4
FF:10169-103B7 60 years, female 19.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 29.8
Pig sample Sample description nTPM
Subiculum
nTPM: 6.7
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.9
Sample A Female 8.2
Sample B Female 5.9
Sample C Male 6.3
Sample D Male 6.5
Dorsal hippocampus
nTPM: 4.6
Samples: 4

Max nTPM: 6.4
Min nTPM: 3.0
Sample A Female 4.9
Sample B Female 6.4
Sample C Male 4.1
Sample D Male 3.0
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 32.1
Min nTPM: 25.5
Sample A Female 31.8
Sample B Female 32.1
Sample C Male 25.5
Sample D Male 30.0
Ventral hippocampus
nTPM: 10.5
Samples: 4

Max nTPM: 16.5
Min nTPM: 4.2
Sample A Female 14.2
Sample B Female 7.0
Sample C Male 16.5
Sample D Male 4.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 44.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.5
Samples: 4

Max nTPM: 60.1
Min nTPM: 30.8
Sample A Male 53.3
Sample B Male 60.1
Sample C Female 33.8
Sample D Female 30.8
Hippocampal formation
nTPM: 15.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 11.3
Sample A Male 18.2
Sample B Male 14.0
Sample C Female 11.3
Sample D Female 18.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.5
75042242 Antisense, RP_051219_02_C11, Mouse strain C57BL/6J (56 days, male) 6.0
74512027 Antisense, RP_060220_03_D04, Mouse strain C57BL/6J (56 days, male) 3.9
71210877 Antisense, RP_050810_04_G02, Mouse strain C57BL/6J (56 days, male) 3.5
74000546 Antisense, RP_051219_02_C11, Mouse strain C57BL/6J (56 days, male) 2.9

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