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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIPA1L2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
79.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIPA1L2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
45.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
2.2
983
Tumor
1.6
313
Tumor
1.4
135
Tumor
1.4
355
Tumor
1.3
471
Tumor
1.1
125
Tumor
1.1
443
Tumor
1.1
813
Tumor
1.1
213
Tumor
1.1
497
Tumor
0.9
421
Tumor
0.9
865
Tumor
0.8
567
Tumor
0.8
912
Normal
0.7
695
Tumor
0.7
383
Tumor
0.7
467
Tumor
0.7
917
Tumor
0.6
257
Tumor
0.6
463
Tumor
0.6
283
Tumor
0.6
923
Tumor
0.6
192
Normal
0.6
884
Normal
0.6
617
Tumor
0.5
823
Tumor
0.5
661
Tumor
0.5
353
Tumor
0.5
914
Normal
0.5
641
Tumor
0.5
635
Tumor
0.5
277
Tumor
0.5
473
Tumor
0.4
956
Normal
0.4
527
Tumor
0.4
882
Normal
0.4
863
Tumor
0.4
455
Tumor
0.4
1021
Tumor
0.4
431
Tumor
0.4
913
Tumor
0.4
131
Tumor
0.4
745
Tumor
0.4
545
Tumor
0.4
361
Tumor
0.4
525
Tumor
0.3
814
Normal
0.3
425
Tumor
0.3
1025
Tumor
0.3
494
Normal
0.3
297
Tumor
0.3
535
Tumor
0.3
951
Tumor
0.3
864
Normal
0.3
445
Tumor
0.3
147
Tumor
0.2
311
Tumor
0.2
721
Tumor
0.2
815
Tumor
0.2
517
Tumor
0.2
185
Tumor
0.2
352
Normal
0.2
478
Normal
0.2
477
Tumor
0.2
493
Tumor
0.2
878
Normal
0.2
1043
Tumor
0.2
868
Normal
0.2
214
Normal
0.2
953
Tumor
0.2
857
Tumor
0.2
744
Normal
0.2
375
Tumor
0.2
483
Tumor
0.1
866
Normal
0.1
873
Tumor
0.1
422
Normal
0.1
698
Normal
0.1
461
Tumor
0.1
112
Tumor
0.1
224
Normal
0.1
785
Tumor
0.1
1031
Tumor
0.1
195
Tumor
0.1
426
Normal
0.1
223
Tumor
0.1
498
Normal
0.1
448
Normal
0.1
231
Tumor
0.1
488
Normal
0.1
534
Normal
0.1
697
Tumor
0.1
915
Tumor
0.1
492
Normal
0.1
491
Tumor
0.1
332
Normal
0.1
546
Normal
0.1
528
Normal
0.1
1032
Normal
0.0
145
Tumor
0.0
331
Tumor
0.0
161
Tumor
0.0
862
Normal
0.0
851
Tumor
0.0
715
Tumor
0.0
268
Normal
0.0
211
Tumor
0.0
212
Normal
0.0
376
Normal
0.0
314
Normal
0.0
446
Normal
0.0
738
Normal
0.0
1046
Normal
0.0
1042
Normal
0.0
427
Tumor
0.0
538
Normal
0.0
267
Tumor
0.0
642
Normal
0.0
671
Tumor
0.0
124
Normal
0.0
217
Tumor
0.0
384
Normal
0.0
874
Normal
0.0
536
Normal
0.0
746
Normal
0.0
228
Normal
0.0
191
Tumor
0.0
414
Normal
0.0
1044
Normal
-0.1
487
Tumor
-0.1
921
Tumor
-0.1
357
Tumor
-0.1
484
Normal
-0.1
444
Normal
-0.1
777
Tumor
-0.1
126
Normal
-0.1
564
Normal
-0.1
262
Normal
-0.1
413
Tumor
-0.1
365
Tumor
-0.1
1045
Tumor
-0.1
232
Normal
-0.1
285
Tumor
-0.1
516
Normal
-0.1
261
Tumor
-0.1
187
Tumor
-0.1
284
Normal
-0.1
686
Normal
-0.1
1041
Tumor
-0.1
526
Normal
-0.1
858
Normal
-0.1
1022
Normal
-0.1
137
Tumor
-0.1
312
Normal
-0.1
258
Normal
-0.1
367
Tumor
-0.1
756
Normal
-0.1
568
Normal
-0.1
188
Normal
-0.1
672
Normal
-0.1
944
Normal
-0.1
984
Normal
-0.1
778
Normal
-0.1
737
Tumor
-0.1
557
Tumor
-0.1
755
Tumor
-0.1
742
Normal
-0.1
362
Normal
-0.1
1027
Tumor
-0.1
867
Tumor
-0.1
616
Normal
-0.1
428
Normal
-0.1
554
Normal
-0.1
627
Tumor
-0.1
341
Tumor
-0.1
852
Normal
-0.1
877
Tumor
-0.1
786
Normal
-0.1
963
Tumor
-0.2
272
Normal
-0.2
728
Normal
-0.2
447
Tumor
-0.2
342
Normal
-0.2
524
Normal
-0.2
978
Normal
-0.2
723
Tumor
-0.2
128
Normal
-0.2
368
Normal
-0.2
714
Normal
-0.2
943
Tumor
-0.2
432
Normal
-0.2
142
Normal
-0.2
952
Normal
-0.2
574
Normal
-0.2
572
Normal
-0.2
186
Normal
-0.2
696
Normal
-0.2
937
Tumor
-0.2
816
Normal
-0.2
727
Tumor
-0.2
424
Normal
-0.2
533
Tumor
-0.2
298
Normal
-0.2
162
Normal
-0.2
358
Normal
-0.2
563
Tumor
-0.2
354
Normal
-0.2
636
Normal
-0.2
558
Normal
-0.2
861
Tumor
-0.2
514
Normal
-0.2
114
Normal
-0.2
286
Normal
-0.2
818
Normal
-0.2
434
Normal
-0.2
976
Normal
-0.2
436
Normal
-0.2
716
Normal
-0.2
344
Normal
-0.2
366
Normal
-0.2
966
Normal
-0.2
411
Tumor
-0.2
958
Normal
-0.3
227
Tumor
-0.3
271
Tumor
-0.3
938
Normal
-0.3
221
Tumor
-0.3
911
Tumor
-0.3
218
Normal
-0.3
1014
Normal
-0.3
968
Normal
-0.3
713
Tumor
-0.3
146
Normal
-0.3
925
Tumor
-0.3
916
Normal
-0.3
663
Tumor
-0.3
196
Normal
-0.3
1016
Normal
-0.3
975
Tumor
-0.3
132
Normal
-0.3
222
Normal
-0.3
615
Tumor
-0.3
628
Normal
-0.3
127
Tumor
-0.3
722
Normal
-0.3
964
Normal
-0.3
138
Normal
-0.3
472
Normal
-0.3
278
Normal
-0.3
957
Tumor
-0.3
136
Normal
-0.3
665
Tumor
-0.3
423
Tumor
-0.3
824
Normal
-0.3
148
Normal
-0.3
515
Tumor
-0.3
924
Normal
-0.3
743
Tumor
-0.3
435
Tumor
-0.4
172
Normal
-0.4
1026
Normal
-0.4
571
Tumor
-0.4
965
Tumor
-0.4
433
Tumor
-0.4
141
Tumor
-0.4
111
Normal
-0.4
518
Normal
-0.4
817
Tumor
-0.4
573
Tumor
-0.4
513
Tumor
-0.4
537
Tumor
-0.4
363
Tumor
-0.4
1028
Normal
-0.4
113
Tumor
-0.4
954
Normal
-0.4
171
Tumor
-0.4
452
Normal
-0.4
662
Normal
-0.4
977
Tumor
-0.4
474
Normal
-0.4
685
Tumor
-0.4
464
Normal
-0.4
982
Normal
-0.4
926
Normal
-0.5
922
Normal
-0.5
618
Normal
-0.5
523
Tumor
-0.5
1015
Tumor
-0.5
553
Tumor
-0.5
955
Tumor
-0.5
883
Tumor
-0.5
356
Normal
-0.5
724
Normal
-0.5
881
Tumor
-0.5
967
Tumor
-0.6
981
Tumor
-0.6
462
Normal
-0.6
647
Tumor
-0.6
482
Normal
-0.6
918
Normal
-0.7
123
Tumor
-0.7
1013
Tumor
-0.7
468
Normal
-0.7
741
Tumor
-0.7
327
Tumor
-0.7
481
Tumor
-0.8
456
Normal
-0.8
466
Normal
-0.8
412
Normal
-0.8
415
Tumor
-0.8
451
Tumor
-0.9
351
Tumor
-0.9
666
Normal
-0.9
416
Normal
-0.9
664
Normal
-0.9
328
Normal
-0.9
648
Normal
-0.9
364
Normal
-1.0
465
Tumor
-1.4
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
