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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAGC is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAGC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.1
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
491
Tumor
1.3
851
Tumor
1.2
257
Tumor
1.1
125
Tumor
1.0
957
Tumor
1.0
283
Tumor
1.0
745
Tumor
0.9
537
Tumor
0.9
1027
Tumor
0.8
313
Tumor
0.8
147
Tumor
0.8
375
Tumor
0.7
573
Tumor
0.6
1025
Tumor
0.5
953
Tumor
0.5
421
Tumor
0.5
525
Tumor
0.5
925
Tumor
0.4
343
Tumor
0.4
557
Tumor
0.4
387
Tumor
0.4
231
Tumor
0.3
425
Tumor
0.3
965
Tumor
0.3
395
Tumor
0.3
954
Normal
0.3
533
Tumor
0.3
513
Tumor
0.3
716
Normal
0.3
1041
Tumor
0.3
355
Tumor
0.3
713
Tumor
0.3
415
Tumor
0.2
451
Tumor
0.2
478
Normal
0.2
958
Normal
0.2
493
Tumor
0.2
685
Tumor
0.2
823
Tumor
0.2
427
Tumor
0.2
1015
Tumor
0.2
943
Tumor
0.2
647
Tumor
0.2
563
Tumor
0.2
952
Normal
0.2
211
Tumor
0.2
746
Normal
0.2
883
Tumor
0.2
724
Normal
0.2
571
Tumor
0.2
492
Normal
0.2
483
Tumor
0.2
572
Normal
0.2
311
Tumor
0.2
966
Normal
0.2
364
Normal
0.2
924
Normal
0.1
1045
Tumor
0.1
426
Normal
0.1
686
Normal
0.1
185
Tumor
0.1
434
Normal
0.1
978
Normal
0.1
1014
Normal
0.1
328
Normal
0.1
1042
Normal
0.1
938
Normal
0.1
697
Tumor
0.1
867
Tumor
0.1
558
Normal
0.1
494
Normal
0.1
917
Tumor
0.1
471
Tumor
0.1
1013
Tumor
0.1
444
Normal
0.1
911
Tumor
0.1
473
Tumor
0.1
224
Normal
0.1
223
Tumor
0.1
422
Normal
0.1
124
Normal
0.1
482
Normal
0.1
661
Tumor
0.1
477
Tumor
0.1
524
Normal
0.1
538
Normal
0.1
432
Normal
0.1
498
Normal
0.1
564
Normal
0.1
984
Normal
0.1
488
Normal
0.1
742
Normal
0.1
714
Normal
0.1
696
Normal
0.1
1032
Normal
0.1
616
Normal
0.1
723
Tumor
0.1
142
Normal
0.1
123
Tumor
0.1
817
Tumor
0.1
567
Tumor
0.1
816
Normal
0.1
467
Tumor
0.1
111
Normal
0.1
862
Normal
0.1
472
Normal
0.1
481
Tumor
0.1
951
Tumor
0.1
423
Tumor
0.1
744
Normal
0.1
923
Tumor
0.1
865
Tumor
0.1
663
Tumor
0.1
146
Normal
0.1
536
Normal
0.0
272
Normal
0.0
926
Normal
0.0
741
Tumor
0.0
412
Normal
0.0
443
Tumor
0.0
474
Normal
0.0
352
Normal
0.0
956
Normal
0.0
786
Normal
0.0
944
Normal
0.0
866
Normal
0.0
517
Tumor
0.0
968
Normal
0.0
824
Normal
0.0
884
Normal
0.0
462
Normal
0.0
212
Normal
0.0
873
Tumor
0.0
728
Normal
0.0
461
Tumor
0.0
162
Normal
0.0
344
Normal
0.0
261
Tumor
0.0
615
Tumor
0.0
271
Tumor
0.0
882
Normal
0.0
617
Tumor
0.0
1026
Normal
0.0
284
Normal
0.0
922
Normal
0.0
148
Normal
0.0
627
Tumor
0.0
721
Tumor
0.0
964
Normal
0.0
448
Normal
0.0
516
Normal
0.0
354
Normal
0.0
698
Normal
0.0
738
Normal
0.0
514
Normal
0.0
232
Normal
0.0
1044
Normal
0.0
568
Normal
0.0
1046
Normal
0.0
1028
Normal
0.0
534
Normal
0.0
221
Tumor
0.0
277
Tumor
0.0
228
Normal
0.0
914
Normal
0.0
484
Normal
0.0
356
Normal
0.0
428
Normal
0.0
641
Tumor
0.0
756
Normal
0.0
916
Normal
0.0
1022
Normal
0.0
436
Normal
0.0
868
Normal
0.0
145
Tumor
0.0
722
Normal
0.0
213
Tumor
0.0
662
Normal
0.0
262
Normal
0.0
172
Normal
0.0
574
Normal
0.0
715
Tumor
0.0
858
Normal
0.0
362
Normal
-0.1
363
Tumor
-0.1
976
Normal
-0.1
487
Tumor
-0.1
413
Tumor
-0.1
863
Tumor
-0.1
874
Normal
-0.1
878
Normal
-0.1
171
Tumor
-0.1
912
Normal
-0.1
136
Normal
-0.1
518
Normal
-0.1
384
Normal
-0.1
268
Normal
-0.1
361
Tumor
-0.1
778
Normal
-0.1
411
Tumor
-0.1
921
Tumor
-0.1
135
Tumor
-0.1
535
Tumor
-0.1
857
Tumor
-0.1
385
Tumor
-0.1
466
Normal
-0.1
777
Tumor
-0.1
554
Normal
-0.1
955
Tumor
-0.1
861
Tumor
-0.1
666
Normal
-0.1
416
Normal
-0.1
695
Tumor
-0.1
528
Normal
-0.1
396
Normal
-0.1
963
Tumor
-0.1
755
Tumor
-0.1
1016
Normal
-0.1
546
Normal
-0.1
435
Tumor
-0.1
126
Normal
-0.1
545
Tumor
-0.1
982
Normal
-0.1
141
Tumor
-0.1
286
Normal
-0.1
314
Normal
-0.1
881
Tumor
-0.1
456
Normal
-0.1
188
Normal
-0.1
1021
Tumor
-0.1
447
Tumor
-0.1
864
Normal
-0.1
737
Tumor
-0.1
937
Tumor
-0.1
664
Normal
-0.1
877
Tumor
-0.1
975
Tumor
-0.1
918
Normal
-0.1
391
Tumor
-0.1
386
Normal
-0.1
114
Normal
-0.1
526
Normal
-0.1
353
Tumor
-0.1
341
Tumor
-0.2
218
Normal
-0.2
365
Tumor
-0.2
138
Normal
-0.2
1031
Tumor
-0.2
327
Tumor
-0.2
196
Normal
-0.2
298
Normal
-0.2
278
Normal
-0.2
392
Normal
-0.2
127
Tumor
-0.2
636
Normal
-0.2
112
Tumor
-0.2
814
Normal
-0.2
192
Normal
-0.2
852
Normal
-0.2
186
Normal
-0.2
913
Tumor
-0.2
394
Normal
-0.2
915
Tumor
-0.2
446
Normal
-0.2
424
Normal
-0.2
618
Normal
-0.2
367
Tumor
-0.2
628
Normal
-0.2
977
Tumor
-0.2
358
Normal
-0.2
222
Normal
-0.2
342
Normal
-0.2
813
Tumor
-0.2
785
Tumor
-0.2
128
Normal
-0.2
642
Normal
-0.2
195
Tumor
-0.2
131
Tumor
-0.2
672
Normal
-0.2
393
Tumor
-0.2
332
Normal
-0.2
464
Normal
-0.2
258
Normal
-0.2
388
Normal
-0.2
433
Tumor
-0.2
553
Tumor
-0.2
227
Tumor
-0.2
366
Normal
-0.2
161
Tumor
-0.3
376
Normal
-0.3
368
Normal
-0.3
414
Normal
-0.3
214
Normal
-0.3
267
Tumor
-0.3
463
Tumor
-0.3
527
Tumor
-0.3
113
Tumor
-0.3
468
Normal
-0.3
648
Normal
-0.3
981
Tumor
-0.3
665
Tumor
-0.3
497
Tumor
-0.3
312
Normal
-0.3
132
Normal
-0.3
455
Tumor
-0.3
383
Tumor
-0.3
217
Tumor
-0.3
452
Normal
-0.3
818
Normal
-0.3
515
Tumor
-0.3
187
Tumor
-0.3
357
Tumor
-0.3
431
Tumor
-0.3
137
Tumor
-0.4
815
Tumor
-0.4
1043
Tumor
-0.4
983
Tumor
-0.4
297
Tumor
-0.4
743
Tumor
-0.4
331
Tumor
-0.5
191
Tumor
-0.5
671
Tumor
-0.5
967
Tumor
-0.5
727
Tumor
-0.5
465
Tumor
-0.5
445
Tumor
-0.5
523
Tumor
-0.7
351
Tumor
-0.7
285
Tumor
-0.7
635
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
