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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAP7D1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
59.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
53.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAP7D1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
94.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
73.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
68.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
44.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
1.4
211
Tumor
1.3
311
Tumor
1.3
957
Tumor
1.1
943
Tumor
1.1
537
Tumor
1.0
536
Normal
0.9
545
Tumor
0.7
917
Tumor
0.7
192
Normal
0.7
478
Normal
0.7
525
Tumor
0.7
492
Normal
0.7
498
Normal
0.7
444
Normal
0.7
823
Tumor
0.6
916
Normal
0.6
415
Tumor
0.6
213
Tumor
0.6
923
Tumor
0.6
975
Tumor
0.6
535
Tumor
0.6
817
Tumor
0.6
447
Tumor
0.6
355
Tumor
0.6
455
Tumor
0.6
814
Normal
0.6
721
Tumor
0.6
383
Tumor
0.6
724
Normal
0.6
524
Normal
0.6
925
Tumor
0.5
563
Tumor
0.5
857
Tumor
0.5
195
Tumor
0.5
461
Tumor
0.5
384
Normal
0.5
881
Tumor
0.5
388
Normal
0.5
343
Tumor
0.5
883
Tumor
0.5
483
Tumor
0.5
953
Tumor
0.5
491
Tumor
0.5
493
Tumor
0.5
661
Tumor
0.5
161
Tumor
0.5
365
Tumor
0.5
642
Normal
0.5
978
Normal
0.5
851
Tumor
0.4
471
Tumor
0.4
375
Tumor
0.4
434
Normal
0.4
697
Tumor
0.4
713
Tumor
0.4
852
Normal
0.4
386
Normal
0.4
396
Normal
0.4
188
Normal
0.4
268
Normal
0.4
538
Normal
0.4
387
Tumor
0.4
573
Tumor
0.4
297
Tumor
0.4
966
Normal
0.4
366
Normal
0.4
217
Tumor
0.4
958
Normal
0.4
963
Tumor
0.4
395
Tumor
0.4
385
Tumor
0.4
391
Tumor
0.4
937
Tumor
0.3
628
Normal
0.3
913
Tumor
0.3
533
Tumor
0.3
258
Normal
0.3
224
Normal
0.3
394
Normal
0.3
861
Tumor
0.3
617
Tumor
0.3
393
Tumor
0.3
262
Normal
0.3
218
Normal
0.3
363
Tumor
0.3
473
Tumor
0.3
527
Tumor
0.3
411
Tumor
0.3
368
Normal
0.3
362
Normal
0.3
272
Normal
0.3
976
Normal
0.3
191
Tumor
0.3
185
Tumor
0.3
516
Normal
0.3
171
Tumor
0.3
1045
Tumor
0.3
223
Tumor
0.3
951
Tumor
0.3
716
Normal
0.3
1044
Normal
0.3
685
Tumor
0.3
361
Tumor
0.2
874
Normal
0.2
467
Tumor
0.2
231
Tumor
0.2
641
Tumor
0.2
618
Normal
0.2
376
Normal
0.2
954
Normal
0.2
187
Tumor
0.2
232
Normal
0.2
627
Tumor
0.2
984
Normal
0.2
1013
Tumor
0.2
647
Tumor
0.2
284
Normal
0.2
327
Tumor
0.2
686
Normal
0.2
921
Tumor
0.2
915
Tumor
0.2
214
Normal
0.2
212
Normal
0.2
567
Tumor
0.2
785
Tumor
0.2
331
Tumor
0.2
515
Tumor
0.2
662
Normal
0.2
918
Normal
0.2
965
Tumor
0.2
968
Normal
0.2
1028
Normal
0.2
474
Normal
0.2
672
Normal
0.2
494
Normal
0.2
1027
Tumor
0.2
866
Normal
0.2
666
Normal
0.2
477
Tumor
0.2
727
Tumor
0.2
558
Normal
0.1
514
Normal
0.1
392
Normal
0.1
513
Tumor
0.1
715
Tumor
0.1
698
Normal
0.1
1015
Tumor
0.1
696
Normal
0.1
865
Tumor
0.1
145
Tumor
0.1
884
Normal
0.1
497
Tumor
0.1
421
Tumor
0.1
816
Normal
0.1
863
Tumor
0.1
813
Tumor
0.1
416
Normal
0.1
636
Normal
0.1
868
Normal
0.1
615
Tumor
0.1
664
Normal
0.1
222
Normal
0.1
172
Normal
0.1
956
Normal
0.1
146
Normal
0.1
451
Tumor
0.1
141
Tumor
0.1
714
Normal
0.1
952
Normal
0.1
1031
Tumor
0.1
267
Tumor
0.1
364
Normal
0.1
745
Tumor
0.1
862
Normal
0.1
914
Normal
0.1
671
Tumor
0.1
571
Tumor
0.1
487
Tumor
0.1
924
Normal
0.1
125
Tumor
0.1
162
Normal
0.1
186
Normal
0.1
148
Normal
0.0
257
Tumor
0.0
126
Normal
0.0
1021
Tumor
0.0
557
Tumor
0.0
425
Tumor
0.0
553
Tumor
0.0
484
Normal
0.0
261
Tumor
0.0
528
Normal
0.0
472
Normal
0.0
367
Tumor
0.0
922
Normal
0.0
488
Normal
0.0
873
Tumor
0.0
926
Normal
0.0
312
Normal
0.0
412
Normal
0.0
433
Tumor
0.0
427
Tumor
0.0
456
Normal
0.0
1043
Tumor
0.0
1032
Normal
0.0
1046
Normal
0.0
554
Normal
0.0
663
Tumor
0.0
648
Normal
0.0
882
Normal
0.0
137
Tumor
0.0
313
Tumor
0.0
777
Tumor
0.0
944
Normal
0.0
277
Tumor
0.0
964
Normal
0.0
468
Normal
0.0
546
Normal
0.0
938
Normal
0.0
526
Normal
0.0
1014
Normal
0.0
448
Normal
0.0
867
Tumor
0.0
665
Tumor
0.0
481
Tumor
-0.1
737
Tumor
-0.1
518
Normal
-0.1
136
Normal
-0.1
778
Normal
-0.1
955
Tumor
-0.1
982
Normal
-0.1
878
Normal
-0.1
864
Normal
-0.1
328
Normal
-0.1
228
Normal
-0.1
786
Normal
-0.1
446
Normal
-0.1
138
Normal
-0.1
196
Normal
-0.1
443
Tumor
-0.1
572
Normal
-0.1
912
Normal
-0.1
722
Normal
-0.1
911
Tumor
-0.1
574
Normal
-0.1
858
Normal
-0.1
981
Tumor
-0.1
482
Normal
-0.1
523
Tumor
-0.1
271
Tumor
-0.1
1026
Normal
-0.1
967
Tumor
-0.1
135
Tumor
-0.1
1022
Normal
-0.1
517
Tumor
-0.1
463
Tumor
-0.1
286
Normal
-0.1
1042
Normal
-0.1
534
Normal
-0.1
113
Tumor
-0.1
142
Normal
-0.1
983
Tumor
-0.1
413
Tumor
-0.2
616
Normal
-0.2
744
Normal
-0.2
466
Normal
-0.2
452
Normal
-0.2
351
Tumor
-0.2
424
Normal
-0.2
818
Normal
-0.2
695
Tumor
-0.2
1016
Normal
-0.2
462
Normal
-0.2
221
Tumor
-0.2
432
Normal
-0.2
635
Tumor
-0.2
124
Normal
-0.2
1025
Tumor
-0.2
422
Normal
-0.2
977
Tumor
-0.2
756
Normal
-0.2
746
Normal
-0.2
298
Normal
-0.2
332
Normal
-0.2
824
Normal
-0.2
755
Tumor
-0.2
426
Normal
-0.2
357
Tumor
-0.2
815
Tumor
-0.3
431
Tumor
-0.3
877
Tumor
-0.3
728
Normal
-0.3
741
Tumor
-0.3
132
Normal
-0.3
723
Tumor
-0.3
1041
Tumor
-0.3
344
Normal
-0.3
147
Tumor
-0.3
353
Tumor
-0.3
341
Tumor
-0.3
564
Normal
-0.3
278
Normal
-0.3
342
Normal
-0.3
285
Tumor
-0.3
738
Normal
-0.3
428
Normal
-0.3
114
Normal
-0.3
464
Normal
-0.4
127
Tumor
-0.4
568
Normal
-0.4
356
Normal
-0.4
414
Normal
-0.4
465
Tumor
-0.4
436
Normal
-0.4
131
Tumor
-0.4
314
Normal
-0.4
111
Normal
-0.4
354
Normal
-0.4
352
Normal
-0.4
128
Normal
-0.4
742
Normal
-0.4
423
Tumor
-0.5
227
Tumor
-0.5
445
Tumor
-0.5
112
Tumor
-0.5
435
Tumor
-0.6
123
Tumor
-0.6
743
Tumor
-0.6
358
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
