MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.4 nTPM
HPA Brain:33.0 nTPM
GTEx:41.4 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Pig:6.9 nTPM
Mouse:7.2 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.2
2666 Male, age 74, left hemisphere 53.6
2586 Male, age 75, left hemisphere 32.2
1870 Female, age 42, unknown 20.3
2828 Female, age 72, unknown 19.6
1827 Male, age 72, unknown 18.3
1833 Male, age 53, unknown 14.5
1830 Male, age 51, unknown 13.9
2019 Male, age 18, unknown 11.8
2411 Female, age 72, unknown 11.5
2219 Male, age 76, both hemispheres 6.8
Dorsal raphe nucleus
nTPM: 15.0
2047 Male, age 72, unknown 17.7
2750 Male, age 76, both hemispheres 16.6
1828 Male, age 53, unknown 16.1
2016 Female, age 72, unknown 13.2
2298 Female, age 72, unknown 11.6
Inferior colliculus
nTPM: 13.6
1848 Female, age 42, unknown 14.6
2849 Male, age 72, unknown 14.5
1890 Male, age 53, unknown 14.3
2097 Female, age 72, unknown 11.1
Median raphe nucleus
nTPM: 19.2
2220 Male, age 76, midline 19.2
Periaquaductal grey, anterior
nTPM: 33.0
1947 Male, age 18, unknown 55.3
1795 Male, age 51, unknown 30.1
2502 Female, age 75, unknown 13.7
Periaquaductal grey, dorsal
nTPM: 16.7
2850 Male, age 76, both hemispheres 29.6
1831 Male, age 72, unknown 15.2
1840 Male, age 53, unknown 11.1
2464 Female, age 72, unknown 10.8
Periaquaductal grey, lateral
nTPM: 20.1
2140 Male, age 76, both hemispheres 25.6
2272 Male, age 74, both hemispheres 17.7
2053 Male, age 18, unknown 16.9
Pretectal area
nTPM: 17.2
2316 Male, age 76, right hemisphere 24.3
2224 Female, age 72, unknown 24.1
1816 Male, age 51, unknown 22.1
1944 Female, age 72, unknown 18.2
2825 Male, age 18, unknown 16.9
1815 Male, age 53, unknown 16.8
2007 Male, age 72, unknown 16.3
1817 Female, age 42, unknown 16.1
2273 Male, age 74, both hemispheres 12.7
2407 Male, age 75, both hemispheres 12.6
2667 Female, age 75, unknown 9.7
Red nucleus
nTPM: 15.5
2725 Female, age 75, unknown 25.2
2823 Male, age 76, right hemisphere 22.1
1865 Male, age 51, unknown 15.8
2584 Male, age 75, left hemisphere 15.4
1821 Female, age 72, unknown 15.3
2503 Female, age 72, unknown 14.7
1954 Female, age 42, unknown 14.2
1904 Male, age 53, unknown 14.0
2227 Male, age 72, unknown 14.0
2769 Male, age 72, unknown 13.5
2588 Male, age 74, left hemisphere 10.9
2785 Male, age 18, unknown 10.8
Substantia nigra
nTPM: 23.4
1916 Female, age 42, unknown 40.4
2241 Male, age 72, unknown 29.6
1851 Male, age 51, unknown 26.5
1941 Male, age 53, unknown 26.5
2409 Female, age 72, unknown 21.4
2699 Male, age 18, unknown 19.7
1889 Female, age 72, unknown 18.3
2590 Female, age 75, unknown 17.7
2665 Male, age 74, both hemispheres 17.6
2583 Male, age 75, right hemisphere 16.2
Superior colliculus
nTPM: 19.2
2668 Female, age 75, unknown 45.2
1796 Male, age 53, unknown 29.9
2261 Male, age 18, unknown 23.3
2087 Female, age 72, unknown 17.2
1839 Male, age 51, unknown 14.9
1913 Female, age 42, unknown 14.5
2587 Male, age 74, left hemisphere 12.5
1995 Male, age 72, unknown 12.0
2664 Male, age 75, both hemispheres 11.7
1895 Male, age 76, right hemisphere 10.3
Ventral tegmental area
nTPM: 17.0
1915 Female, age 42, unknown 23.6
2218 Male, age 76, both hemispheres 19.0
2410 Female, age 72, unknown 17.8
2223 Female, age 72, unknown 15.3
1942 Male, age 51, unknown 13.8
2021 Male, age 53, unknown 12.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.4
Samples: 139

Max nTPM: 467.3
Min nTPM: 7.2
Std nTPM: 63.6
Median nTPM: 22.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 467.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 458.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 263.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 249.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 158.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 149.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 130.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 129.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 126.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 118.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 97.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.1
FF:10158-103A5 76 years, female 33.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 3.1
Sample A Female 5.8
Sample B Female 7.5
Sample C Male 3.1
Sample D Male 4.5
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.1
Sample A Female 5.5
Sample B Female 4.4
Sample C Male 3.3
Sample D Male 3.1
Periaqueductal gray
nTPM: 3.0
Samples: 3

Max nTPM: 3.7
Min nTPM: 2.3
Sample B Female 3.7
Sample C Male 3.0
Sample D Male 2.3
Superior colliculi
nTPM: 6.9
Samples: 4

Max nTPM: 14.9
Min nTPM: 3.7
Sample A Female 4.5
Sample B Female 14.9
Sample C Male 4.5
Sample D Male 3.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.3
Sample A Male 6.3
Sample B Male 7.5
Sample C Female 6.6
Sample D Female 8.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
576421 Antisense, RP_040826_01_G07, Mouse strain C57BL/6J (56 days, male) 8.3

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