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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAD2L2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
171.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
167.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
133.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
131.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
116.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
115.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
115.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
109.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
103.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
102.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
101.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
97.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
95.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
93.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
89.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
87.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
87.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
86.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
84.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
82.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
82.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
81.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
81.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
79.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
78.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
77.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
75.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
75.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
73.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
70.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
69.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
69.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
69.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
66.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
64.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
63.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
63.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
63.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
62.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
61.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
61.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
60.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
60.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
60.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
59.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
59.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
58.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
57.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
57.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
57.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
56.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
56.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
56.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
55.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
55.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
55.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
53.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
53.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
53.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
52.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
51.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
50.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
50.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
50.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
50.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
49.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
49.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
49.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
48.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
48.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
48.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
47.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
47.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
46.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
46.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
46.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
46.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
46.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
45.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
45.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
45.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
45.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
45.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
44.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
44.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
43.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
42.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
42.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
41.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
41.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
40.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
40.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
40.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
40.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
40.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
39.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
39.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
39.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
38.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
38.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
37.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
37.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
36.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
35.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
34.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
32.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAD2L2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.5
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
131.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
77.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
69.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
69.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
66.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
66.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
64.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
60.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
60.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
59.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
57.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
51.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
48.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
47.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
46.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
46.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
45.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
44.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
42.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
28.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.3
953
Tumor
1.2
313
Tumor
1.1
277
Tumor
1.1
661
Tumor
1.1
663
Tumor
1.0
497
Tumor
0.9
573
Tumor
0.9
571
Tumor
0.9
375
Tumor
0.9
283
Tumor
0.9
125
Tumor
0.8
161
Tumor
0.8
445
Tumor
0.7
923
Tumor
0.7
483
Tumor
0.7
951
Tumor
0.7
943
Tumor
0.7
135
Tumor
0.7
877
Tumor
0.6
925
Tumor
0.6
567
Tumor
0.6
138
Normal
0.6
965
Tumor
0.6
1021
Tumor
0.6
671
Tumor
0.6
737
Tumor
0.6
112
Tumor
0.6
113
Tumor
0.6
141
Tumor
0.6
865
Tumor
0.6
136
Normal
0.5
913
Tumor
0.5
211
Tumor
0.5
557
Tumor
0.5
1027
Tumor
0.5
137
Tumor
0.5
132
Normal
0.5
491
Tumor
0.4
915
Tumor
0.4
127
Tumor
0.4
145
Tumor
0.4
883
Tumor
0.4
741
Tumor
0.4
432
Normal
0.3
431
Tumor
0.3
665
Tumor
0.3
863
Tumor
0.3
435
Tumor
0.3
727
Tumor
0.3
568
Normal
0.3
721
Tumor
0.3
286
Normal
0.3
493
Tumor
0.3
1042
Normal
0.3
185
Tumor
0.3
147
Tumor
0.3
724
Normal
0.3
881
Tumor
0.3
146
Normal
0.2
916
Normal
0.2
311
Tumor
0.2
444
Normal
0.2
685
Tumor
0.2
231
Tumor
0.2
172
Normal
0.2
188
Normal
0.2
487
Tumor
0.2
937
Tumor
0.2
162
Normal
0.2
884
Normal
0.2
361
Tumor
0.2
912
Normal
0.2
148
Normal
0.2
1041
Tumor
0.1
284
Normal
0.1
186
Normal
0.1
443
Tumor
0.1
223
Tumor
0.1
1031
Tumor
0.1
574
Normal
0.1
187
Tumor
0.1
563
Tumor
0.1
1032
Normal
0.1
285
Tumor
0.1
922
Normal
0.1
873
Tumor
0.1
224
Normal
0.1
267
Tumor
0.1
171
Tumor
0.1
666
Normal
0.1
1013
Tumor
0.1
434
Normal
0.1
383
Tumor
0.0
257
Tumor
0.0
433
Tumor
0.0
867
Tumor
0.0
967
Tumor
0.0
1022
Normal
0.0
367
Tumor
0.0
878
Normal
0.0
482
Normal
0.0
957
Tumor
0.0
461
Tumor
0.0
564
Normal
0.0
365
Tumor
0.0
228
Normal
0.0
478
Normal
0.0
647
Tumor
0.0
743
Tumor
0.0
1028
Normal
0.0
864
Normal
0.0
728
Normal
-0.1
952
Normal
-0.1
384
Normal
-0.1
975
Tumor
-0.1
436
Normal
-0.1
212
Normal
-0.1
128
Normal
-0.1
262
Normal
-0.1
662
Normal
-0.1
331
Tumor
-0.1
914
Normal
-0.1
926
Normal
-0.1
742
Normal
-0.1
462
Normal
-0.1
924
Normal
-0.1
446
Normal
-0.1
297
Tumor
-0.1
314
Normal
-0.1
1015
Tumor
-0.1
481
Tumor
-0.1
124
Normal
-0.1
533
Tumor
-0.1
258
Normal
-0.2
963
Tumor
-0.2
738
Normal
-0.2
744
Normal
-0.2
672
Normal
-0.2
723
Tumor
-0.2
332
Normal
-0.2
976
Normal
-0.2
713
Tumor
-0.2
126
Normal
-0.2
572
Normal
-0.2
232
Normal
-0.2
648
Normal
-0.2
261
Tumor
-0.2
1026
Normal
-0.2
664
Normal
-0.2
918
Normal
-0.2
955
Tumor
-0.2
111
Normal
-0.2
958
Normal
-0.2
862
Normal
-0.2
874
Normal
-0.2
917
Tumor
-0.2
882
Normal
-0.2
114
Normal
-0.2
966
Normal
-0.2
956
Normal
-0.2
472
Normal
-0.2
272
Normal
-0.2
268
Normal
-0.3
722
Normal
-0.3
866
Normal
-0.3
868
Normal
-0.3
911
Tumor
-0.3
498
Normal
-0.3
558
Normal
-0.3
981
Tumor
-0.3
227
Tumor
-0.3
1025
Tumor
-0.3
1016
Normal
-0.3
968
Normal
-0.3
376
Normal
-0.3
983
Tumor
-0.4
368
Normal
-0.4
978
Normal
-0.4
278
Normal
-0.4
964
Normal
-0.4
534
Normal
-0.4
977
Tumor
-0.4
492
Normal
-0.4
686
Normal
-0.4
527
Tumor
-0.4
312
Normal
-0.4
982
Normal
-0.4
366
Normal
-0.4
474
Normal
-0.4
362
Normal
-0.4
714
Normal
-0.4
944
Normal
-0.4
695
Tumor
-0.4
861
Tumor
-0.5
984
Normal
-0.5
528
Normal
-0.5
716
Normal
-0.5
142
Normal
-0.5
298
Normal
-0.5
1014
Normal
-0.5
494
Normal
-0.5
696
Normal
-0.6
477
Tumor
-0.6
546
Normal
-0.6
271
Tumor
-0.6
554
Normal
-0.6
938
Normal
-0.6
954
Normal
-0.6
473
Tumor
-0.6
488
Normal
-0.7
545
Tumor
-0.7
484
Normal
-0.7
131
Tumor
-0.7
715
Tumor
-0.8
538
Normal
-0.8
921
Tumor
-0.9
537
Tumor
-1.0
471
Tumor
-1.1
553
Tumor
-1.1
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
851
Tumor
N/A
852
Normal
N/A
615
Tumor
N/A
857
Tumor
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
