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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
99.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
71.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
60.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
52.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
52.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
49.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
47.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
34.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
31.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
29.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.0
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
60.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
54.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
525
Tumor
1.5
465
Tumor
1.4
727
Tumor
1.3
533
Tumor
1.2
1013
Tumor
1.2
113
Tumor
1.1
1021
Tumor
1.0
513
Tumor
1.0
515
Tumor
0.9
262
Normal
0.9
1027
Tumor
0.9
357
Tumor
0.8
953
Tumor
0.8
161
Tumor
0.8
123
Tumor
0.8
955
Tumor
0.7
277
Tumor
0.7
925
Tumor
0.7
195
Tumor
0.6
443
Tumor
0.6
493
Tumor
0.6
125
Tumor
0.6
663
Tumor
0.6
327
Tumor
0.5
427
Tumor
0.5
1015
Tumor
0.5
128
Normal
0.5
865
Tumor
0.5
232
Normal
0.5
341
Tumor
0.5
914
Normal
0.4
366
Normal
0.4
463
Tumor
0.4
188
Normal
0.4
724
Normal
0.4
966
Normal
0.4
222
Normal
0.4
313
Tumor
0.4
343
Tumor
0.4
422
Normal
0.4
737
Tumor
0.4
857
Tumor
0.4
573
Tumor
0.4
434
Normal
0.4
211
Tumor
0.4
518
Normal
0.4
217
Tumor
0.4
1045
Tumor
0.4
883
Tumor
0.3
956
Normal
0.3
428
Normal
0.3
114
Normal
0.3
162
Normal
0.3
126
Normal
0.3
387
Tumor
0.3
111
Normal
0.3
112
Tumor
0.3
563
Tumor
0.3
391
Tumor
0.3
424
Normal
0.3
937
Tumor
0.3
196
Normal
0.3
516
Normal
0.3
741
Tumor
0.3
451
Tumor
0.3
124
Normal
0.3
423
Tumor
0.3
915
Tumor
0.3
218
Normal
0.2
923
Tumor
0.2
477
Tumor
0.2
571
Tumor
0.2
127
Tumor
0.2
728
Normal
0.2
383
Tumor
0.2
385
Tumor
0.2
365
Tumor
0.2
421
Tumor
0.2
132
Normal
0.2
172
Normal
0.2
978
Normal
0.2
514
Normal
0.2
468
Normal
0.2
171
Tumor
0.2
185
Tumor
0.2
375
Tumor
0.2
777
Tumor
0.2
534
Normal
0.2
695
Tumor
0.2
483
Tumor
0.2
146
Normal
0.2
278
Normal
0.2
943
Tumor
0.2
426
Normal
0.2
231
Tumor
0.2
481
Tumor
0.1
721
Tumor
0.1
311
Tumor
0.1
138
Normal
0.1
564
Normal
0.1
136
Normal
0.1
558
Normal
0.1
214
Normal
0.1
283
Tumor
0.1
873
Tumor
0.1
367
Tumor
0.1
362
Normal
0.1
361
Tumor
0.1
213
Tumor
0.1
298
Normal
0.1
452
Normal
0.1
852
Normal
0.1
878
Normal
0.1
258
Normal
0.1
742
Normal
0.1
456
Normal
0.1
1026
Normal
0.1
944
Normal
0.1
413
Tumor
0.1
312
Normal
0.1
1022
Normal
0.1
436
Normal
0.1
186
Normal
0.1
444
Normal
0.1
526
Normal
0.1
823
Tumor
0.1
432
Normal
0.1
685
Tumor
0.1
358
Normal
0.1
148
Normal
0.1
435
Tumor
0.1
286
Normal
0.1
557
Tumor
0.1
461
Tumor
0.1
913
Tumor
0.0
221
Tumor
0.0
617
Tumor
0.0
395
Tumor
0.0
284
Normal
0.0
666
Normal
0.0
344
Normal
0.0
272
Normal
0.0
464
Normal
0.0
628
Normal
0.0
964
Normal
0.0
615
Tumor
0.0
546
Normal
0.0
648
Normal
0.0
1028
Normal
0.0
187
Tumor
0.0
616
Normal
0.0
952
Normal
0.0
332
Normal
0.0
1016
Normal
0.0
416
Normal
0.0
1014
Normal
0.0
414
Normal
0.0
474
Normal
0.0
425
Tumor
0.0
462
Normal
0.0
864
Normal
0.0
574
Normal
0.0
824
Normal
0.0
874
Normal
0.0
415
Tumor
0.0
314
Normal
0.0
142
Normal
0.0
572
Normal
0.0
223
Tumor
0.0
818
Normal
0.0
817
Tumor
0.0
494
Normal
0.0
224
Normal
-0.1
738
Normal
-0.1
568
Normal
-0.1
446
Normal
-0.1
467
Tumor
-0.1
487
Tumor
-0.1
921
Tumor
-0.1
386
Normal
-0.1
746
Normal
-0.1
388
Normal
-0.1
472
Normal
-0.1
257
Tumor
-0.1
722
Normal
-0.1
192
Normal
-0.1
866
Normal
-0.1
642
Normal
-0.1
954
Normal
-0.1
1044
Normal
-0.1
814
Normal
-0.1
661
Tumor
-0.1
356
Normal
-0.1
714
Normal
-0.1
858
Normal
-0.1
723
Tumor
-0.1
376
Normal
-0.2
976
Normal
-0.2
862
Normal
-0.2
524
Normal
-0.2
267
Tumor
-0.2
851
Tumor
-0.2
641
Tumor
-0.2
448
Normal
-0.2
466
Normal
-0.2
1043
Tumor
-0.2
698
Normal
-0.2
431
Tumor
-0.2
863
Tumor
-0.2
917
Tumor
-0.2
918
Normal
-0.2
778
Normal
-0.2
191
Tumor
-0.2
1031
Tumor
-0.2
528
Normal
-0.2
924
Normal
-0.2
368
Normal
-0.2
536
Normal
-0.2
554
Normal
-0.2
471
Tumor
-0.2
662
Normal
-0.2
455
Tumor
-0.2
482
Normal
-0.2
268
Normal
-0.2
968
Normal
-0.2
228
Normal
-0.3
636
Normal
-0.3
963
Tumor
-0.3
965
Tumor
-0.3
491
Tumor
-0.3
135
Tumor
-0.3
145
Tumor
-0.3
816
Normal
-0.3
627
Tumor
-0.3
1046
Normal
-0.3
488
Normal
-0.3
1032
Normal
-0.3
938
Normal
-0.3
868
Normal
-0.3
884
Normal
-0.3
916
Normal
-0.3
137
Tumor
-0.3
492
Normal
-0.3
697
Tumor
-0.3
686
Normal
-0.3
861
Tumor
-0.3
396
Normal
-0.3
342
Normal
-0.3
1042
Normal
-0.3
354
Normal
-0.3
786
Normal
-0.3
926
Normal
-0.3
882
Normal
-0.3
618
Normal
-0.3
412
Normal
-0.3
478
Normal
-0.3
713
Tumor
-0.3
744
Normal
-0.3
951
Tumor
-0.4
922
Normal
-0.4
212
Normal
-0.4
716
Normal
-0.4
982
Normal
-0.4
364
Normal
-0.4
535
Tumor
-0.4
394
Normal
-0.4
538
Normal
-0.4
984
Normal
-0.4
958
Normal
-0.4
756
Normal
-0.4
664
Normal
-0.4
393
Tumor
-0.4
328
Normal
-0.4
484
Normal
-0.4
635
Tumor
-0.4
696
Normal
-0.4
867
Tumor
-0.4
977
Tumor
-0.4
1041
Tumor
-0.4
352
Normal
-0.5
671
Tumor
-0.5
672
Normal
-0.5
567
Tumor
-0.5
297
Tumor
-0.5
271
Tumor
-0.5
392
Normal
-0.5
384
Normal
-0.5
881
Tumor
-0.5
755
Tumor
-0.5
363
Tumor
-0.5
527
Tumor
-0.6
523
Tumor
-0.6
967
Tumor
-0.6
433
Tumor
-0.6
912
Normal
-0.6
983
Tumor
-0.6
447
Tumor
-0.6
877
Tumor
-0.6
498
Normal
-0.6
261
Tumor
-0.6
445
Tumor
-0.6
353
Tumor
-0.6
147
Tumor
-0.7
285
Tumor
-0.7
227
Tumor
-0.7
647
Tumor
-0.7
745
Tumor
-0.7
911
Tumor
-0.8
331
Tumor
-0.8
411
Tumor
-0.8
975
Tumor
-0.8
545
Tumor
-0.8
815
Tumor
-0.8
553
Tumor
-0.8
141
Tumor
-0.8
517
Tumor
-0.8
813
Tumor
-0.9
715
Tumor
-0.9
355
Tumor
-0.9
981
Tumor
-0.9
957
Tumor
-1.0
131
Tumor
-1.1
537
Tumor
-1.2
785
Tumor
-1.3
497
Tumor
-1.5
1025
Tumor
-1.5
351
Tumor
-1.6
665
Tumor
-1.7
473
Tumor
-1.7
743
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
