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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
556.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
433.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
337.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
298.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
274.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
272.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
257.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
247.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
240.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
227.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
222.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
221.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
216.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
210.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
194.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
170.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
167.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
160.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
155.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
152.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
151.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
137.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
134.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
132.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
132.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
115.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
110.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
110.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
109.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
108.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
106.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
105.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
100.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
92.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
90.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
88.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
87.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
84.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
82.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
81.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
78.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
76.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
75.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
74.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
74.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
74.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
72.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
71.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
71.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
71.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
67.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
66.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
62.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
61.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
59.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
59.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
58.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
57.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
57.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
56.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
56.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
55.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
54.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
53.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
53.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
53.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
52.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
51.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
50.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
50.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
49.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
48.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
48.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
47.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
46.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
46.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
45.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
43.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
42.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
42.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
41.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
38.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
34.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
29.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
26.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
231
Samples
Sample
Description
TPM
DO50832
0 years, male, NA, stage:3, alive, 90 days
400.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
348.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
203.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
190.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
176.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
119.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
112.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
110.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
102.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
98.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
90.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
87.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
83.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
82.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
76.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
74.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
65.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
64.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
63.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
62.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
52.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
51.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
42.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
41.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
39.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
35.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
3.2
777
Tumor
2.9
461
Tumor
2.9
1027
Tumor
2.8
863
Tumor
2.8
365
Tumor
2.7
615
Tumor
2.5
685
Tumor
2.5
513
Tumor
2.4
137
Tumor
2.3
523
Tumor
2.3
423
Tumor
2.2
867
Tumor
2.2
953
Tumor
2.0
515
Tumor
1.9
527
Tumor
1.5
395
Tumor
1.4
416
Normal
1.3
393
Tumor
1.2
741
Tumor
1.2
327
Tumor
1.2
913
Tumor
1.2
465
Tumor
1.1
172
Normal
1.1
755
Tumor
1.1
455
Tumor
1.1
487
Tumor
0.8
785
Tumor
0.8
187
Tumor
0.8
141
Tumor
0.8
481
Tumor
0.8
923
Tumor
0.7
328
Normal
0.7
436
Normal
0.7
422
Normal
0.6
727
Tumor
0.6
451
Tumor
0.6
162
Normal
0.6
414
Normal
0.6
361
Tumor
0.6
813
Tumor
0.5
424
Normal
0.5
874
Normal
0.4
533
Tumor
0.4
1021
Tumor
0.4
618
Normal
0.4
723
Tumor
0.4
466
Normal
0.4
445
Tumor
0.3
357
Tumor
0.3
738
Normal
0.3
786
Normal
0.3
868
Normal
0.3
756
Normal
0.3
918
Normal
0.3
114
Normal
0.2
286
Normal
0.2
518
Normal
0.2
188
Normal
0.2
222
Normal
0.2
1042
Normal
0.1
462
Normal
0.1
737
Tumor
0.1
882
Normal
0.1
456
Normal
0.1
472
Normal
0.1
147
Tumor
0.1
952
Normal
0.1
452
Normal
0.1
464
Normal
0.1
366
Normal
0.1
386
Normal
0.1
778
Normal
0.1
394
Normal
0.1
982
Normal
0.1
714
Normal
0.0
914
Normal
0.0
746
Normal
0.0
978
Normal
0.0
125
Tumor
0.0
113
Tumor
0.0
686
Normal
0.0
814
Normal
0.0
312
Normal
0.0
742
Normal
-0.1
421
Tumor
-0.1
392
Normal
-0.1
482
Normal
-0.1
926
Normal
-0.1
428
Normal
-0.1
483
Tumor
-0.1
396
Normal
-0.1
1046
Normal
-0.1
884
Normal
-0.1
223
Tumor
-0.1
514
Normal
-0.1
484
Normal
-0.1
1028
Normal
-0.1
262
Normal
-0.1
648
Normal
-0.1
257
Tumor
-0.1
1032
Normal
-0.1
526
Normal
-0.1
628
Normal
-0.1
258
Normal
-0.1
956
Normal
-0.1
915
Tumor
-0.2
171
Tumor
-0.2
981
Tumor
-0.2
148
Normal
-0.2
186
Normal
-0.2
195
Tumor
-0.2
877
Tumor
-0.2
616
Normal
-0.2
1022
Normal
-0.2
728
Normal
-0.3
1026
Normal
-0.3
132
Normal
-0.3
434
Normal
-0.3
138
Normal
-0.3
468
Normal
-0.3
722
Normal
-0.3
136
Normal
-0.3
426
Normal
-0.3
342
Normal
-0.3
474
Normal
-0.3
642
Normal
-0.4
966
Normal
-0.4
367
Tumor
-0.4
1015
Tumor
-0.4
951
Tumor
-0.4
744
Normal
-0.4
1043
Tumor
-0.4
917
Tumor
-0.4
192
Normal
-0.4
415
Tumor
-0.4
432
Normal
-0.4
516
Normal
-0.5
161
Tumor
-0.5
272
Normal
-0.5
268
Normal
-0.5
564
Normal
-0.5
883
Tumor
-0.5
525
Tumor
-0.5
716
Normal
-0.5
218
Normal
-0.5
446
Normal
-0.5
858
Normal
-0.5
297
Tumor
-0.5
221
Tumor
-0.5
524
Normal
-0.5
477
Tumor
-0.5
376
Normal
-0.5
1016
Normal
-0.5
314
Normal
-0.5
126
Normal
-0.5
387
Tumor
-0.6
864
Normal
-0.6
922
Normal
-0.6
435
Tumor
-0.6
534
Normal
-0.6
362
Normal
-0.6
925
Tumor
-0.6
916
Normal
-0.6
388
Normal
-0.6
111
Normal
-0.6
636
Normal
-0.6
697
Tumor
-0.6
573
Tumor
-0.6
862
Normal
-0.7
212
Normal
-0.7
955
Tumor
-0.7
824
Normal
-0.7
298
Normal
-0.7
818
Normal
-0.7
185
Tumor
-0.7
217
Tumor
-0.7
721
Tumor
-0.7
364
Normal
-0.7
368
Normal
-0.7
467
Tumor
-0.7
944
Normal
-0.7
713
Tumor
-0.7
478
Normal
-0.7
146
Normal
-0.7
341
Tumor
-0.8
411
Tumor
-0.8
964
Normal
-0.8
1044
Normal
-0.8
977
Tumor
-0.8
224
Normal
-0.8
427
Tumor
-0.8
354
Normal
-0.8
425
Tumor
-0.8
546
Normal
-0.8
391
Tumor
-0.8
413
Tumor
-0.8
571
Tumor
-0.8
968
Normal
-0.8
283
Tumor
-0.8
924
Normal
-0.9
278
Normal
-0.9
866
Normal
-0.9
816
Normal
-0.9
228
Normal
-0.9
214
Normal
-0.9
463
Tumor
-0.9
344
Normal
-0.9
1045
Tumor
-0.9
696
Normal
-0.9
664
Normal
-0.9
695
Tumor
-1.0
745
Tumor
-1.0
332
Normal
-1.0
444
Normal
-1.0
412
Normal
-1.0
528
Normal
-1.0
666
Normal
-1.0
313
Tumor
-1.0
563
Tumor
-1.0
352
Normal
-1.0
635
Tumor
-1.0
443
Tumor
-1.0
954
Normal
-1.0
574
Normal
-1.0
356
Normal
-1.1
1014
Normal
-1.1
984
Normal
-1.1
384
Normal
-1.1
617
Tumor
-1.1
698
Normal
-1.1
284
Normal
-1.1
943
Tumor
-1.1
492
Normal
-1.1
498
Normal
-1.1
878
Normal
-1.1
823
Tumor
-1.1
353
Tumor
-1.1
358
Normal
-1.1
142
Normal
-1.1
232
Normal
-1.1
881
Tumor
-1.1
517
Tumor
-1.1
976
Normal
-1.1
473
Tumor
-1.1
558
Normal
-1.2
211
Tumor
-1.2
641
Tumor
-1.2
196
Normal
-1.2
912
Normal
-1.2
433
Tumor
-1.2
724
Normal
-1.2
852
Normal
-1.2
545
Tumor
-1.2
572
Normal
-1.2
554
Normal
-1.2
488
Normal
-1.2
385
Tumor
-1.2
277
Tumor
-1.3
343
Tumor
-1.3
494
Normal
-1.3
538
Normal
-1.3
662
Normal
-1.3
536
Normal
-1.3
145
Tumor
-1.3
213
Tumor
-1.3
873
Tumor
-1.3
568
Normal
-1.3
135
Tumor
-1.3
128
Normal
-1.3
448
Normal
-1.4
663
Tumor
-1.4
1041
Tumor
-1.4
471
Tumor
-1.5
271
Tumor
-1.5
938
Normal
-1.5
131
Tumor
-1.5
383
Tumor
-1.5
267
Tumor
-1.5
861
Tumor
-1.5
491
Tumor
-1.5
557
Tumor
-1.6
1013
Tumor
-1.6
311
Tumor
-1.6
567
Tumor
-1.6
865
Tumor
-1.6
191
Tumor
-1.6
537
Tumor
-1.7
1025
Tumor
-1.7
331
Tumor
-1.7
231
Tumor
-1.7
817
Tumor
-1.7
431
Tumor
-1.7
351
Tumor
-1.7
261
Tumor
-1.7
375
Tumor
-1.7
958
Normal
-1.7
963
Tumor
-1.7
227
Tumor
-1.8
647
Tumor
-1.8
857
Tumor
-1.8
715
Tumor
-1.8
363
Tumor
-1.8
124
Normal
-1.8
967
Tumor
-1.8
285
Tumor
-1.8
1031
Tumor
-1.8
493
Tumor
-1.9
911
Tumor
-1.9
921
Tumor
-1.9
743
Tumor
-1.9
553
Tumor
-1.9
672
Normal
-2.0
983
Tumor
-2.0
497
Tumor
-2.0
535
Tumor
-2.0
127
Tumor
-2.0
355
Tumor
-2.1
975
Tumor
-2.1
965
Tumor
-2.1
123
Tumor
-2.2
112
Tumor
-2.2
447
Tumor
-2.2
665
Tumor
-2.7
671
Tumor
-2.7
851
Tumor
-2.8
957
Tumor
-2.9
937
Tumor
-2.9
661
Tumor
-2.9
815
Tumor
-3.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
