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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRM is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
262.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
217.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
213.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
179.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
151.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
146.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
145.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
145.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
142.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
137.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
135.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
131.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
127.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
118.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
115.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
114.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
111.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
110.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
107.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
103.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
99.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
99.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
97.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
96.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
95.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
94.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
94.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
94.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
93.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
92.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
91.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
90.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
89.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
88.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
87.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
85.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
84.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
81.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
79.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
78.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
77.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
77.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
76.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
76.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
75.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
74.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
73.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
73.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
73.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
73.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
73.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
72.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
72.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
71.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
71.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
71.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
70.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
70.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
70.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
70.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
70.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
69.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
69.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
68.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
68.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
68.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
68.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
68.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
67.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
67.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
66.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
66.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
66.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
65.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
65.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
65.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
65.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
64.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
64.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
63.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
62.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
62.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
62.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
61.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
61.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
61.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
61.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
61.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
60.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
60.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
59.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
58.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
58.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
58.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
58.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
58.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
57.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
56.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
56.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
56.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
56.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
56.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
55.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
55.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
55.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
55.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
54.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
54.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
54.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
54.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
54.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
54.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
52.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
51.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
51.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
51.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
51.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
51.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
50.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
50.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
50.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
50.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
50.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
50.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
49.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
49.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
49.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
49.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
48.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
48.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
48.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
47.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
47.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
47.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
47.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
47.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
47.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
46.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
46.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
46.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
45.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
45.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
45.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
45.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
45.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
45.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
44.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
44.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
44.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
43.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
42.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
42.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
41.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
41.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
41.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
41.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
41.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
40.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
40.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
40.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
40.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
40.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
40.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
39.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
39.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
38.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
37.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
37.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
37.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
36.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
36.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
35.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
34.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
32.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
31.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
30.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
28.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRM is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.8
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
164.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
161.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
141.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
121.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
116.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
112.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
112.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
109.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
103.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
95.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
93.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
91.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
91.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
90.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
88.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
86.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
84.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
80.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
79.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
78.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
76.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
75.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
72.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
71.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
70.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
69.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
68.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
67.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
66.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
66.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
66.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
63.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
61.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
60.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
59.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
57.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
54.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
54.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
54.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
53.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
52.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
51.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
50.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
50.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
50.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
49.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
48.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
48.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
48.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
48.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
48.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
48.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
48.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
47.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
46.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
46.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
45.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
44.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
43.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
43.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
43.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
42.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
41.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
39.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
36.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
35.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
33.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
31.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
697
Tumor
1.1
1021
Tumor
1.1
661
Tumor
1.0
283
Tumor
1.0
387
Tumor
0.9
567
Tumor
0.9
571
Tumor
0.9
525
Tumor
0.8
557
Tumor
0.8
573
Tumor
0.7
425
Tumor
0.7
395
Tumor
0.7
327
Tumor
0.7
231
Tumor
0.7
724
Normal
0.7
331
Tumor
0.7
285
Tumor
0.6
113
Tumor
0.6
367
Tumor
0.6
951
Tumor
0.6
223
Tumor
0.6
427
Tumor
0.6
813
Tumor
0.6
727
Tumor
0.6
527
Tumor
0.6
351
Tumor
0.5
883
Tumor
0.5
123
Tumor
0.5
865
Tumor
0.5
267
Tumor
0.5
741
Tumor
0.5
112
Tumor
0.5
413
Tumor
0.5
213
Tumor
0.4
391
Tumor
0.4
385
Tumor
0.4
965
Tumor
0.4
737
Tumor
0.4
713
Tumor
0.4
461
Tumor
0.4
923
Tumor
0.4
383
Tumor
0.3
127
Tumor
0.3
493
Tumor
0.3
445
Tumor
0.3
311
Tumor
0.3
357
Tumor
0.3
777
Tumor
0.3
967
Tumor
0.3
185
Tumor
0.3
925
Tumor
0.3
483
Tumor
0.2
983
Tumor
0.2
1015
Tumor
0.2
187
Tumor
0.2
465
Tumor
0.2
421
Tumor
0.2
195
Tumor
0.2
917
Tumor
0.2
1027
Tumor
0.2
455
Tumor
0.2
537
Tumor
0.2
361
Tumor
0.2
881
Tumor
0.2
615
Tumor
0.2
635
Tumor
0.2
135
Tumor
0.2
515
Tumor
0.1
126
Normal
0.1
463
Tumor
0.1
423
Tumor
0.1
124
Normal
0.1
685
Tumor
0.1
114
Normal
0.1
451
Tumor
0.1
211
Tumor
0.1
217
Tumor
0.1
443
Tumor
0.1
431
Tumor
0.1
877
Tumor
0.1
981
Tumor
0.1
433
Tumor
0.1
533
Tumor
0.1
563
Tumor
0.1
857
Tumor
0.1
814
Normal
0.1
128
Normal
0.1
192
Normal
0.1
785
Tumor
0.1
227
Tumor
0.1
873
Tumor
0.0
492
Normal
0.0
743
Tumor
0.0
721
Tumor
0.0
268
Normal
0.0
366
Normal
0.0
517
Tumor
0.0
228
Normal
0.0
284
Normal
0.0
137
Tumor
0.0
224
Normal
0.0
728
Normal
0.0
444
Normal
0.0
212
Normal
-0.1
863
Tumor
-0.1
363
Tumor
-0.1
963
Tumor
-0.1
738
Normal
-0.1
434
Normal
-0.1
823
Tumor
-0.1
111
Normal
-0.1
467
Tumor
-0.1
432
Normal
-0.1
365
Tumor
-0.1
277
Tumor
-0.1
424
Normal
-0.1
191
Tumor
-0.1
468
Normal
-0.1
446
Normal
-0.1
368
Normal
-0.1
671
Tumor
-0.1
497
Tumor
-0.1
136
Normal
-0.1
297
Tumor
-0.1
394
Normal
-0.1
477
Tumor
-0.1
362
Normal
-0.1
376
Normal
-0.1
426
Normal
-0.1
428
Normal
-0.1
447
Tumor
-0.1
353
Tumor
-0.1
162
Normal
-0.1
746
Normal
-0.1
261
Tumor
-0.1
286
Normal
-0.1
491
Tumor
-0.1
312
Normal
-0.1
386
Normal
-0.1
867
Tumor
-0.1
435
Tumor
-0.1
384
Normal
-0.1
138
Normal
-0.2
466
Normal
-0.2
161
Tumor
-0.2
915
Tumor
-0.2
141
Tumor
-0.2
392
Normal
-0.2
722
Normal
-0.2
538
Normal
-0.2
574
Normal
-0.2
388
Normal
-0.2
278
Normal
-0.2
516
Normal
-0.2
666
Normal
-0.2
132
Normal
-0.2
422
Normal
-0.2
818
Normal
-0.2
663
Tumor
-0.2
332
Normal
-0.2
627
Tumor
-0.2
414
Normal
-0.2
214
Normal
-0.2
298
Normal
-0.2
481
Tumor
-0.2
393
Tumor
-0.2
513
Tumor
-0.2
172
Normal
-0.2
723
Tumor
-0.2
816
Normal
-0.2
396
Normal
-0.2
375
Tumor
-0.2
436
Normal
-0.2
664
Normal
-0.2
218
Normal
-0.2
341
Tumor
-0.2
665
Tumor
-0.2
662
Normal
-0.2
913
Tumor
-0.2
188
Normal
-0.2
858
Normal
-0.2
343
Tumor
-0.2
815
Tumor
-0.2
564
Normal
-0.2
851
Tumor
-0.2
536
Normal
-0.2
952
Normal
-0.2
344
Normal
-0.2
1041
Tumor
-0.2
672
Normal
-0.2
745
Tumor
-0.2
196
Normal
-0.2
686
Normal
-0.2
232
Normal
-0.2
272
Normal
-0.2
778
Normal
-0.2
456
Normal
-0.2
498
Normal
-0.2
415
Tumor
-0.2
868
Normal
-0.3
186
Normal
-0.3
535
Tumor
-0.3
966
Normal
-0.3
356
Normal
-0.3
1025
Tumor
-0.3
975
Tumor
-0.3
852
Normal
-0.3
648
Normal
-0.3
148
Normal
-0.3
1043
Tumor
-0.3
978
Normal
-0.3
271
Tumor
-0.3
222
Normal
-0.3
262
Normal
-0.3
1045
Tumor
-0.3
912
Normal
-0.3
452
Normal
-0.3
572
Normal
-0.3
474
Normal
-0.3
314
Normal
-0.3
145
Tumor
-0.3
464
Normal
-0.3
558
Normal
-0.3
742
Normal
-0.3
756
Normal
-0.3
514
Normal
-0.3
714
Normal
-0.3
953
Tumor
-0.3
874
Normal
-0.3
142
Normal
-0.3
943
Tumor
-0.3
916
Normal
-0.3
494
Normal
-0.3
642
Normal
-0.3
744
Normal
-0.3
944
Normal
-0.3
328
Normal
-0.3
976
Normal
-0.3
171
Tumor
-0.3
568
Normal
-0.3
125
Tumor
-0.3
473
Tumor
-0.3
958
Normal
-0.3
696
Normal
-0.3
364
Normal
-0.3
484
Normal
-0.3
131
Tumor
-0.3
146
Normal
-0.3
984
Normal
-0.3
545
Tumor
-0.3
716
Normal
-0.3
786
Normal
-0.3
617
Tumor
-0.4
914
Normal
-0.4
258
Normal
-0.4
524
Normal
-0.4
416
Normal
-0.4
968
Normal
-0.4
528
Normal
-0.4
358
Normal
-0.4
628
Normal
-0.4
824
Normal
-0.4
355
Tumor
-0.4
864
Normal
-0.4
866
Normal
-0.4
884
Normal
-0.4
478
Normal
-0.4
647
Tumor
-0.4
862
Normal
-0.4
817
Tumor
-0.4
1016
Normal
-0.4
918
Normal
-0.4
924
Normal
-0.4
1028
Normal
-0.4
1044
Normal
-0.4
1031
Tumor
-0.4
861
Tumor
-0.4
257
Tumor
-0.4
342
Normal
-0.4
964
Normal
-0.4
147
Tumor
-0.4
938
Normal
-0.4
482
Normal
-0.4
982
Normal
-0.4
352
Normal
-0.4
636
Normal
-0.4
526
Normal
-0.4
954
Normal
-0.4
221
Tumor
-0.4
616
Normal
-0.5
695
Tumor
-0.5
937
Tumor
-0.5
462
Normal
-0.5
412
Normal
-0.5
554
Normal
-0.5
471
Tumor
-0.5
1013
Tumor
-0.5
618
Normal
-0.5
926
Normal
-0.5
715
Tumor
-0.5
411
Tumor
-0.5
518
Normal
-0.5
546
Normal
-0.5
1046
Normal
-0.5
354
Normal
-0.5
956
Normal
-0.5
1026
Normal
-0.5
472
Normal
-0.5
922
Normal
-0.5
977
Tumor
-0.5
698
Normal
-0.5
1014
Normal
-0.5
882
Normal
-0.6
488
Normal
-0.6
448
Normal
-0.6
878
Normal
-0.6
1022
Normal
-0.6
755
Tumor
-0.6
553
Tumor
-0.6
955
Tumor
-0.6
534
Normal
-0.6
1042
Normal
-0.7
523
Tumor
-0.7
641
Tumor
-0.8
313
Tumor
-0.8
1032
Normal
-0.8
921
Tumor
-0.8
911
Tumor
-0.8
487
Tumor
-0.9
957
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
