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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMTOR2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
181.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
662.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
530.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
450.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
439.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
438.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
424.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
417.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
412.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
408.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
407.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
389.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
371.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
366.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
363.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
357.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
355.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
345.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
344.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
335.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
334.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
333.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
332.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
328.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
327.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
320.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
314.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
311.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
311.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
302.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
301.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
297.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
295.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
293.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
291.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
290.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
290.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
285.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
285.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
285.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
284.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
283.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
281.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
279.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
278.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
275.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
272.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
272.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
271.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
269.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
268.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
264.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
263.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
262.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
258.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
256.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
253.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
252.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
252.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
248.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
247.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
245.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
244.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
244.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
243.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
241.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
239.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
238.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
235.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
234.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
234.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
233.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
231.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
230.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
230.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
228.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
227.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
227.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
226.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
225.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
224.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
223.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
223.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
222.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
222.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
221.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
221.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
220.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
219.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
218.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
217.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
217.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
215.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
214.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
214.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
212.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
211.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
211.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
210.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
209.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
207.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
206.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
206.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
206.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
205.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
205.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
204.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
204.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
204.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
203.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
203.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
202.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
201.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
201.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
201.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
200.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
200.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
199.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
198.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
198.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
197.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
197.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
196.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
196.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
196.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
195.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
195.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
195.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
195.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
195.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
194.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
194.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
194.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
194.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
193.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
193.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
192.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
192.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
189.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
189.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
188.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
188.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
188.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
187.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
187.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
186.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
186.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
185.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
185.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
184.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
184.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
184.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
183.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
183.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
183.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
182.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
182.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
181.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
177.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
177.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
175.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
175.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
175.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
175.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
175.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
174.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
174.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
174.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
173.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
172.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
172.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
171.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
170.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
170.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
169.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
169.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
169.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
168.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
168.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
167.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
167.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
167.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
166.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
165.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
165.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
164.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
163.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
163.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
162.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
162.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
162.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
162.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
162.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
161.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
161.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
159.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
159.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
159.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
158.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
157.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
157.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
156.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
156.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
156.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
155.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
155.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
155.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
154.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
154.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
153.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
151.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
150.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
149.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
148.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
148.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
148.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
147.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
147.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
147.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
147.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
147.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
146.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
146.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
146.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
146.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
146.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
145.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
145.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
144.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
144.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
142.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
142.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
141.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
140.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
140.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
140.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
139.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
139.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
138.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
138.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
138.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
138.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
138.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
137.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
137.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
136.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
135.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
134.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
134.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
132.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
132.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
131.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
130.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
130.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
130.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
130.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
129.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
129.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
129.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
128.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
128.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
128.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
127.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
127.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
127.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
127.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
126.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
126.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
125.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
124.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
123.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
123.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
123.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
123.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
122.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
121.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
121.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
121.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
120.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
119.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
119.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
119.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
118.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
118.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
117.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
116.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
115.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
115.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
114.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
113.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
112.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
112.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
112.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
111.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
111.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
111.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
111.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
111.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
110.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
109.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
108.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
108.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
107.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
107.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
107.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
105.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
104.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
104.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
104.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
104.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
104.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
103.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
102.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
102.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
101.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
101.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
100.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
100.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
100.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
99.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
98.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
97.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
96.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
96.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
95.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
94.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
94.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
94.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
93.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
93.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
92.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
92.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
90.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
90.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
90.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
90.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
90.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
89.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
87.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
87.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
85.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
85.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
84.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
84.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
83.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
83.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
83.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
82.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
82.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
82.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
81.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
80.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
80.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
76.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
76.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
73.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
73.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
70.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
70.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
68.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
63.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
60.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMTOR2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
103.1
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
612.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
388.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
279.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
275.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
221.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
214.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
213.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
213.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
206.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
204.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
203.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
196.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
192.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
183.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
183.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
181.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
180.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
178.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
175.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
172.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
170.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
160.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
159.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
157.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
157.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
153.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
153.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
153.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
150.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
149.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
149.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
149.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
148.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
147.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
147.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
144.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
143.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
142.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
142.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
141.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
141.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
140.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
140.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
139.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
139.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
137.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
135.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
135.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
133.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
133.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
133.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
128.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
127.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
126.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
124.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
124.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
123.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
122.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
121.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
121.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
120.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
118.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
117.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
116.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
116.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
115.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
115.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
114.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
114.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
112.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
112.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
112.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
111.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
111.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
111.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
111.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
110.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
110.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
109.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
108.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
108.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
108.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
107.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
107.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
107.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
106.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
106.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
106.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
106.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
106.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
105.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
103.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
102.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
102.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
101.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
101.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
100.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
100.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
100.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
98.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
97.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
97.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
97.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
97.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
96.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
96.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
96.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
95.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
95.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
95.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
94.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
94.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
93.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
93.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
92.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
92.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
91.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
90.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
90.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
90.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
90.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
89.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
89.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
88.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
87.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
87.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
87.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
86.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
86.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
86.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
85.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
85.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
85.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
85.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
84.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
83.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
83.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
82.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
82.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
82.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
82.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
82.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
81.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
81.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
81.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
80.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
80.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
80.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
80.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
80.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
79.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
79.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
78.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
78.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
78.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
77.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
77.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
77.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
76.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
76.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
76.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
75.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
73.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
73.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
73.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
72.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
72.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
72.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
72.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
71.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
69.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
68.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
68.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
65.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
64.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
64.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
63.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
61.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
61.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
61.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
61.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
61.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
60.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
59.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
59.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
59.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
58.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
57.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
57.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
57.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
56.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
55.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
54.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
54.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
54.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
54.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
53.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
53.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
52.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
52.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
51.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
51.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
50.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
50.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
48.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
48.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
48.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
48.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
47.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
47.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
46.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
45.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
44.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
42.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
41.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
41.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
40.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
40.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
38.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
38.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
37.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
35.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
0.5
911
Tumor
0.5
394
Normal
0.4
353
Tumor
0.3
616
Normal
0.3
111
Normal
0.3
851
Tumor
0.3
743
Tumor
0.3
573
Tumor
0.3
451
Tumor
0.3
286
Normal
0.3
354
Normal
0.3
388
Normal
0.3
557
Tumor
0.3
356
Normal
0.3
867
Tumor
0.3
267
Tumor
0.3
358
Normal
0.3
913
Tumor
0.3
421
Tumor
0.3
272
Normal
0.3
343
Tumor
0.3
464
Normal
0.3
914
Normal
0.3
432
Normal
0.3
742
Normal
0.3
344
Normal
0.2
466
Normal
0.2
862
Normal
0.2
617
Tumor
0.2
362
Normal
0.2
352
Normal
0.2
271
Tumor
0.2
618
Normal
0.2
462
Normal
0.2
858
Normal
0.2
436
Normal
0.2
686
Normal
0.2
212
Normal
0.2
278
Normal
0.2
257
Tumor
0.2
526
Normal
0.2
434
Normal
0.2
124
Normal
0.2
786
Normal
0.2
722
Normal
0.2
912
Normal
0.2
361
Tumor
0.2
375
Tumor
0.2
824
Normal
0.2
342
Normal
0.2
446
Normal
0.2
814
Normal
0.2
642
Normal
0.2
713
Tumor
0.2
956
Normal
0.2
384
Normal
0.2
284
Normal
0.2
467
Tumor
0.2
868
Normal
0.2
435
Tumor
0.2
744
Normal
0.2
468
Normal
0.2
228
Normal
0.2
136
Normal
0.2
721
Tumor
0.2
516
Normal
0.1
396
Normal
0.1
738
Normal
0.1
224
Normal
0.1
648
Normal
0.1
482
Normal
0.1
146
Normal
0.1
428
Normal
0.1
456
Normal
0.1
636
Normal
0.1
715
Tumor
0.1
376
Normal
0.1
311
Tumor
0.1
696
Normal
0.1
723
Tumor
0.1
297
Tumor
0.1
328
Normal
0.1
188
Normal
0.1
258
Normal
0.1
816
Normal
0.1
514
Normal
0.1
132
Normal
0.1
386
Normal
0.1
1022
Normal
0.1
262
Normal
0.1
298
Normal
0.1
365
Tumor
0.1
232
Normal
0.1
135
Tumor
0.1
491
Tumor
0.1
488
Normal
0.1
268
Normal
0.1
368
Normal
0.1
1045
Tumor
0.1
148
Normal
0.1
664
Normal
0.1
114
Normal
0.1
364
Normal
0.1
874
Normal
0.1
756
Normal
0.1
518
Normal
0.1
186
Normal
0.1
498
Normal
0.1
422
Normal
0.1
745
Tumor
0.1
818
Normal
0.1
261
Tumor
0.1
882
Normal
0.1
628
Normal
0.1
113
Tumor
0.0
728
Normal
0.0
746
Normal
0.0
366
Normal
0.0
864
Normal
0.0
425
Tumor
0.0
424
Normal
0.0
866
Normal
0.0
472
Normal
0.0
162
Normal
0.0
414
Normal
0.0
423
Tumor
0.0
128
Normal
0.0
126
Normal
0.0
944
Normal
0.0
444
Normal
0.0
524
Normal
0.0
214
Normal
0.0
1025
Tumor
0.0
187
Tumor
0.0
517
Tumor
0.0
416
Normal
0.0
536
Normal
0.0
666
Normal
0.0
172
Normal
0.0
426
Normal
0.0
627
Tumor
0.0
412
Normal
0.0
685
Tumor
0.0
185
Tumor
0.0
568
Normal
0.0
513
Tumor
0.0
1044
Normal
0.0
615
Tumor
0.0
938
Normal
0.0
222
Normal
0.0
528
Normal
0.0
395
Tumor
0.0
884
Normal
0.0
142
Normal
0.0
1042
Normal
0.0
392
Normal
0.0
574
Normal
0.0
1014
Normal
0.0
698
Normal
0.0
138
Normal
0.0
474
Normal
0.0
312
Normal
0.0
873
Tumor
0.0
448
Normal
0.0
852
Normal
0.0
918
Normal
0.0
196
Normal
0.0
741
Tumor
0.0
952
Normal
0.0
724
Normal
0.0
481
Tumor
0.0
367
Tumor
0.0
976
Normal
0.0
227
Tumor
0.0
1032
Normal
0.0
823
Tumor
0.0
955
Tumor
0.0
716
Normal
0.0
1016
Normal
0.0
327
Tumor
0.0
332
Normal
0.0
452
Normal
0.0
223
Tumor
0.0
563
Tumor
-0.1
145
Tumor
-0.1
494
Normal
-0.1
191
Tumor
-0.1
525
Tumor
-0.1
863
Tumor
-0.1
415
Tumor
-0.1
331
Tumor
-0.1
351
Tumor
-0.1
978
Normal
-0.1
564
Normal
-0.1
447
Tumor
-0.1
478
Normal
-0.1
125
Tumor
-0.1
964
Normal
-0.1
1028
Normal
-0.1
663
Tumor
-0.1
778
Normal
-0.1
558
Normal
-0.1
714
Normal
-0.1
283
Tumor
-0.1
533
Tumor
-0.1
571
Tumor
-0.1
161
Tumor
-0.1
1026
Normal
-0.1
192
Normal
-0.1
363
Tumor
-0.1
954
Normal
-0.1
662
Normal
-0.1
665
Tumor
-0.1
572
Normal
-0.1
926
Normal
-0.1
982
Normal
-0.1
433
Tumor
-0.1
314
Normal
-0.1
195
Tumor
-0.1
1041
Tumor
-0.1
443
Tumor
-0.1
878
Normal
-0.1
672
Normal
-0.1
127
Tumor
-0.1
217
Tumor
-0.1
387
Tumor
-0.1
515
Tumor
-0.1
393
Tumor
-0.1
877
Tumor
-0.1
461
Tumor
-0.1
313
Tumor
-0.1
1027
Tumor
-0.2
968
Normal
-0.2
924
Normal
-0.2
534
Normal
-0.2
484
Normal
-0.2
391
Tumor
-0.2
277
Tumor
-0.2
231
Tumor
-0.2
385
Tumor
-0.2
137
Tumor
-0.2
218
Normal
-0.2
285
Tumor
-0.2
537
Tumor
-0.2
221
Tumor
-0.2
697
Tumor
-0.2
445
Tumor
-0.2
958
Normal
-0.2
455
Tumor
-0.2
881
Tumor
-0.2
492
Normal
-0.2
661
Tumor
-0.2
925
Tumor
-0.2
641
Tumor
-0.2
755
Tumor
-0.2
477
Tumor
-0.2
966
Normal
-0.2
341
Tumor
-0.2
861
Tumor
-0.2
817
Tumor
-0.2
813
Tumor
-0.2
141
Tumor
-0.2
431
Tumor
-0.2
171
Tumor
-0.2
427
Tumor
-0.2
413
Tumor
-0.2
671
Tumor
-0.2
1046
Normal
-0.2
213
Tumor
-0.2
567
Tumor
-0.2
737
Tumor
-0.3
112
Tumor
-0.3
471
Tumor
-0.3
463
Tumor
-0.3
916
Normal
-0.3
922
Normal
-0.3
857
Tumor
-0.3
383
Tumor
-0.3
953
Tumor
-0.3
647
Tumor
-0.3
535
Tumor
-0.3
865
Tumor
-0.3
951
Tumor
-0.3
465
Tumor
-0.3
957
Tumor
-0.3
355
Tumor
-0.3
538
Normal
-0.3
984
Normal
-0.3
777
Tumor
-0.3
1015
Tumor
-0.3
727
Tumor
-0.3
981
Tumor
-0.4
815
Tumor
-0.4
554
Normal
-0.4
493
Tumor
-0.4
483
Tumor
-0.4
411
Tumor
-0.4
357
Tumor
-0.4
546
Normal
-0.4
123
Tumor
-0.4
473
Tumor
-0.4
975
Tumor
-0.4
917
Tumor
-0.4
943
Tumor
-0.4
211
Tumor
-0.4
523
Tumor
-0.4
967
Tumor
-0.4
131
Tumor
-0.4
883
Tumor
-0.4
1043
Tumor
-0.4
785
Tumor
-0.4
965
Tumor
-0.5
487
Tumor
-0.5
553
Tumor
-0.5
915
Tumor
-0.5
937
Tumor
-0.5
963
Tumor
-0.5
635
Tumor
-0.5
545
Tumor
-0.6
923
Tumor
-0.6
497
Tumor
-0.6
695
Tumor
-0.6
977
Tumor
-0.6
921
Tumor
-0.6
1031
Tumor
-0.6
527
Tumor
-0.6
1013
Tumor
-0.7
1021
Tumor
-0.8
983
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.