We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARHGEF2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
78.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
64.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
51.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
50.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
47.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
33.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARHGEF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
65.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
56.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
52.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
51.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
43.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
2.1
983
Tumor
1.9
743
Tumor
1.9
661
Tumor
1.7
567
Tumor
1.3
375
Tumor
1.3
343
Tumor
1.1
131
Tumor
1.1
283
Tumor
1.0
125
Tumor
1.0
537
Tumor
1.0
285
Tumor
0.9
463
Tumor
0.9
297
Tumor
0.9
331
Tumor
0.9
351
Tumor
0.9
447
Tumor
0.9
497
Tumor
0.8
923
Tumor
0.8
545
Tumor
0.8
877
Tumor
0.8
965
Tumor
0.8
311
Tumor
0.8
737
Tumor
0.8
355
Tumor
0.8
367
Tumor
0.7
953
Tumor
0.7
671
Tumor
0.7
313
Tumor
0.7
161
Tumor
0.7
957
Tumor
0.7
455
Tumor
0.7
815
Tumor
0.6
391
Tumor
0.6
491
Tumor
0.6
967
Tumor
0.6
427
Tumor
0.6
147
Tumor
0.6
727
Tumor
0.6
535
Tumor
0.6
517
Tumor
0.6
917
Tumor
0.5
385
Tumor
0.5
443
Tumor
0.5
943
Tumor
0.5
663
Tumor
0.5
724
Normal
0.5
413
Tumor
0.4
137
Tumor
0.4
851
Tumor
0.4
421
Tumor
0.4
357
Tumor
0.4
461
Tumor
0.4
387
Tumor
0.4
525
Tumor
0.4
823
Tumor
0.4
536
Normal
0.4
627
Tumor
0.3
814
Normal
0.3
573
Tumor
0.3
213
Tumor
0.3
217
Tumor
0.3
1043
Tumor
0.3
135
Tumor
0.3
813
Tumor
0.3
425
Tumor
0.3
257
Tumor
0.3
1013
Tumor
0.3
467
Tumor
0.3
1031
Tumor
0.3
192
Normal
0.2
563
Tumor
0.2
1015
Tumor
0.2
445
Tumor
0.2
231
Tumor
0.2
1025
Tumor
0.2
492
Normal
0.2
713
Tumor
0.2
817
Tumor
0.2
921
Tumor
0.1
963
Tumor
0.1
434
Normal
0.1
383
Tumor
0.1
617
Tumor
0.1
478
Normal
0.1
363
Tumor
0.1
697
Tumor
0.1
498
Normal
0.1
262
Normal
0.1
975
Tumor
0.1
393
Tumor
0.1
977
Tumor
0.1
951
Tumor
0.1
271
Tumor
0.1
195
Tumor
0.1
471
Tumor
0.1
978
Normal
0.1
185
Tumor
0.1
191
Tumor
0.1
124
Normal
0.0
966
Normal
0.0
188
Normal
0.0
127
Tumor
0.0
451
Tumor
0.0
268
Normal
0.0
365
Tumor
0.0
444
Normal
0.0
146
Normal
0.0
141
Tumor
0.0
881
Tumor
0.0
224
Normal
0.0
384
Normal
0.0
721
Tumor
0.0
524
Normal
0.0
123
Tumor
0.0
138
Normal
0.0
571
Tumor
0.0
861
Tumor
0.0
312
Normal
-0.1
277
Tumor
-0.1
672
Normal
-0.1
126
Normal
-0.1
145
Tumor
-0.1
361
Tumor
-0.1
473
Tumor
-0.1
142
Normal
-0.1
662
Normal
-0.1
435
Tumor
-0.1
665
Tumor
-0.1
187
Tumor
-0.1
368
Normal
-0.1
136
Normal
-0.1
715
Tumor
-0.1
362
Normal
-0.1
883
Tumor
-0.1
332
Normal
-0.1
1021
Tumor
-0.1
411
Tumor
-0.1
386
Normal
-0.1
456
Normal
-0.1
218
Normal
-0.1
227
Tumor
-0.1
538
Normal
-0.1
352
Normal
-0.1
366
Normal
-0.1
284
Normal
-0.1
558
Normal
-0.1
221
Tumor
-0.1
468
Normal
-0.1
344
Normal
-0.2
925
Tumor
-0.2
354
Normal
-0.2
493
Tumor
-0.2
865
Tumor
-0.2
641
Tumor
-0.2
686
Normal
-0.2
132
Normal
-0.2
114
Normal
-0.2
664
Normal
-0.2
976
Normal
-0.2
916
Normal
-0.2
557
Tumor
-0.2
527
Tumor
-0.2
574
Normal
-0.2
716
Normal
-0.2
666
Normal
-0.2
852
Normal
-0.2
261
Tumor
-0.2
433
Tumor
-0.2
464
Normal
-0.2
111
Normal
-0.2
477
Tumor
-0.2
341
Tumor
-0.2
857
Tumor
-0.2
112
Tumor
-0.2
314
Normal
-0.2
744
Normal
-0.2
483
Tumor
-0.2
952
Normal
-0.2
272
Normal
-0.3
956
Normal
-0.3
376
Normal
-0.3
984
Normal
-0.3
212
Normal
-0.3
528
Normal
-0.3
423
Tumor
-0.3
358
Normal
-0.3
572
Normal
-0.3
568
Normal
-0.3
533
Tumor
-0.3
487
Tumor
-0.3
564
Normal
-0.3
278
Normal
-0.3
396
Normal
-0.3
816
Normal
-0.3
267
Tumor
-0.3
172
Normal
-0.3
494
Normal
-0.3
1044
Normal
-0.3
148
Normal
-0.3
214
Normal
-0.3
286
Normal
-0.3
415
Tumor
-0.3
728
Normal
-0.3
392
Normal
-0.3
446
Normal
-0.3
958
Normal
-0.3
914
Normal
-0.3
648
Normal
-0.3
874
Normal
-0.3
954
Normal
-0.3
514
Normal
-0.3
738
Normal
-0.3
162
Normal
-0.3
526
Normal
-0.3
1028
Normal
-0.3
554
Normal
-0.3
258
Normal
-0.3
982
Normal
-0.3
628
Normal
-0.3
873
Tumor
-0.3
395
Tumor
-0.3
516
Normal
-0.3
422
Normal
-0.3
488
Normal
-0.3
968
Normal
-0.4
1016
Normal
-0.4
342
Normal
-0.4
353
Tumor
-0.4
723
Tumor
-0.4
546
Normal
-0.4
424
Normal
-0.4
745
Tumor
-0.4
222
Normal
-0.4
778
Normal
-0.4
534
Normal
-0.4
863
Tumor
-0.4
1014
Normal
-0.4
722
Normal
-0.4
228
Normal
-0.4
412
Normal
-0.4
756
Normal
-0.4
465
Tumor
-0.4
913
Tumor
-0.4
388
Normal
-0.4
698
Normal
-0.4
466
Normal
-0.4
432
Normal
-0.4
518
Normal
-0.4
696
Normal
-0.4
232
Normal
-0.4
128
Normal
-0.4
113
Tumor
-0.4
298
Normal
-0.4
964
Normal
-0.4
1046
Normal
-0.4
186
Normal
-0.4
858
Normal
-0.4
428
Normal
-0.4
786
Normal
-0.4
523
Tumor
-0.4
695
Tumor
-0.4
1045
Tumor
-0.4
394
Normal
-0.4
642
Normal
-0.4
223
Tumor
-0.4
864
Normal
-0.4
474
Normal
-0.4
824
Normal
-0.4
647
Tumor
-0.5
553
Tumor
-0.5
918
Normal
-0.5
416
Normal
-0.5
472
Normal
-0.5
938
Normal
-0.5
452
Normal
-0.5
364
Normal
-0.5
356
Normal
-0.5
448
Normal
-0.5
196
Normal
-0.5
484
Normal
-0.5
426
Normal
-0.5
818
Normal
-0.5
944
Normal
-0.5
171
Tumor
-0.5
636
Normal
-0.5
922
Normal
-0.5
742
Normal
-0.5
414
Normal
-0.5
1032
Normal
-0.5
878
Normal
-0.5
755
Tumor
-0.5
785
Tumor
-0.5
714
Normal
-0.5
1042
Normal
-0.5
926
Normal
-0.5
882
Normal
-0.5
431
Tumor
-0.5
866
Normal
-0.6
436
Normal
-0.6
868
Normal
-0.6
862
Normal
-0.6
1026
Normal
-0.6
635
Tumor
-0.6
955
Tumor
-0.6
867
Tumor
-0.6
328
Normal
-0.6
884
Normal
-0.6
513
Tumor
-0.6
912
Normal
-0.6
924
Normal
-0.6
981
Tumor
-0.6
746
Normal
-0.6
616
Normal
-0.6
618
Normal
-0.6
327
Tumor
-0.6
515
Tumor
-0.6
937
Tumor
-0.6
615
Tumor
-0.6
462
Normal
-0.7
685
Tumor
-0.7
482
Normal
-0.7
915
Tumor
-0.7
1022
Normal
-0.7
741
Tumor
-0.7
481
Tumor
-0.8
1041
Tumor
-0.8
777
Tumor
-0.9
1027
Tumor
-0.9
911
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
