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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.2
nTPM
HPA Brain:
117.4
nTPM
GTEx:
9.2
nTPM
FANTOM5:
0.5
Scaled Tags Per Million
Pig:
52.0
nTPM
Mouse:
14.6
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
117.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 48.6
2828
Female, age 72, unknown
102.7
2019
Male, age 18, unknown
87.5
1827
Male, age 72, unknown
63.5
2219
Male, age 76, both hemispheres
50.8
2666
Male, age 74, left hemisphere
43.7
2586
Male, age 75, left hemisphere
42.2
1833
Male, age 53, unknown
26.5
2411
Female, age 72, unknown
25.1
1870
Female, age 42, unknown
24.6
1830
Male, age 51, unknown
19.5
Dorsal raphe nucleus nTPM: 21.1
2298
Female, age 72, unknown
28.6
2750
Male, age 76, both hemispheres
23.1
1828
Male, age 53, unknown
22.7
2047
Male, age 72, unknown
17.1
2016
Female, age 72, unknown
14.0
Inferior colliculus nTPM: 34.7
2097
Female, age 72, unknown
40.5
1890
Male, age 53, unknown
37.0
1848
Female, age 42, unknown
35.3
2849
Male, age 72, unknown
25.9
Median raphe nucleus nTPM: 31.2
2220
Male, age 76, midline
31.2
Periaquaductal grey, anterior nTPM: 49.4
1795
Male, age 51, unknown
78.6
2502
Female, age 75, unknown
52.7
1947
Male, age 18, unknown
16.8
Periaquaductal grey, dorsal nTPM: 37.8
1831
Male, age 72, unknown
62.6
1840
Male, age 53, unknown
34.2
2464
Female, age 72, unknown
31.4
2850
Male, age 76, both hemispheres
23.0
Periaquaductal grey, lateral nTPM: 26.9
2053
Male, age 18, unknown
35.8
2140
Male, age 76, both hemispheres
25.9
2272
Male, age 74, both hemispheres
19.0
Pretectal area nTPM: 117.4
1816
Male, age 51, unknown
244.5
1944
Female, age 72, unknown
218.8
1815
Male, age 53, unknown
185.2
1817
Female, age 42, unknown
183.5
2667
Female, age 75, unknown
171.9
2007
Male, age 72, unknown
154.6
2273
Male, age 74, both hemispheres
32.2
2316
Male, age 76, right hemisphere
29.8
2224
Female, age 72, unknown
25.3
2825
Male, age 18, unknown
23.4
2407
Male, age 75, both hemispheres
22.5
Red nucleus nTPM: 26.9
2785
Male, age 18, unknown
95.8
2584
Male, age 75, left hemisphere
35.6
2588
Male, age 74, left hemisphere
33.1
2823
Male, age 76, right hemisphere
26.7
2503
Female, age 72, unknown
25.6
1954
Female, age 42, unknown
19.7
1904
Male, age 53, unknown
17.9
1865
Male, age 51, unknown
16.1
1821
Female, age 72, unknown
13.9
2725
Female, age 75, unknown
13.2
2769
Male, age 72, unknown
13.1
2227
Male, age 72, unknown
12.2
Substantia nigra nTPM: 50.9
1889
Female, age 72, unknown
126.7
2665
Male, age 74, both hemispheres
101.9
1916
Female, age 42, unknown
55.3
1851
Male, age 51, unknown
48.4
2583
Male, age 75, right hemisphere
38.3
2409
Female, age 72, unknown
34.2
1941
Male, age 53, unknown
33.6
2241
Male, age 72, unknown
25.7
2590
Female, age 75, unknown
23.3
2699
Male, age 18, unknown
21.3
Superior colliculus nTPM: 76.4
2087
Female, age 72, unknown
184.9
1913
Female, age 42, unknown
102.3
1796
Male, age 53, unknown
97.7
1995
Male, age 72, unknown
91.5
2261
Male, age 18, unknown
83.2
2668
Female, age 75, unknown
67.8
1895
Male, age 76, right hemisphere
43.6
2664
Male, age 75, both hemispheres
39.9
1839
Male, age 51, unknown
26.6
2587
Male, age 74, left hemisphere
26.3
Ventral tegmental area nTPM: 40.8
2218
Male, age 76, both hemispheres
64.6
2410
Female, age 72, unknown
42.9
1942
Male, age 51, unknown
39.9
2223
Female, age 72, unknown
39.1
1915
Female, age 42, unknown
36.0
2021
Male, age 53, unknown
22.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 9.2
Samples: 139
Max nTPM: 31.7
Min nTPM: 0.4
Std nTPM: 6.6
Median nTPM: 7.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
31.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
28.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
26.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
26.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
24.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
23.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
23.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
21.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
21.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
20.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
20.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
19.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
18.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
18.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
17.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
17.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
17.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
16.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
16.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
16.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
16.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
16.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
15.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
15.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
15.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
15.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
15.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
15.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
14.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
14.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
14.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
14.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
14.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
13.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
13.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
13.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
13.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
13.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
12.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
12.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
12.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
12.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
12.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
11.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
11.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
11.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
11.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
10.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
10.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
10.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
10.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
9.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
9.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
9.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
9.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
9.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
9.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
8.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
8.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
8.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
8.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
8.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
8.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
8.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
7.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
7.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
7.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
7.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
7.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
6.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
6.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
6.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
6.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
6.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
6.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
6.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
5.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
5.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
5.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
5.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
5.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
5.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
5.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
5.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
4.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
4.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
4.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
4.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
4.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
4.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
4.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
4.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
4.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
4.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
4.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
4.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
4.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
3.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
3.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
3.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
3.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
3.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
3.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
3.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
3.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
3.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
3.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
2.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 14.7
Samples: 4
Max nTPM: 19.2
Min nTPM: 12.1
Sample A
Male
19.2
Sample B
Male
12.1
Sample C
Female
12.2
Sample D
Female
15.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.