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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CAPZA1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
171.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
110.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
102.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
100.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
100.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
96.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
94.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
90.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
89.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
89.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
83.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
82.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
81.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
80.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
80.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
77.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
77.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
76.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
76.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
75.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
72.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
71.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
70.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
68.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
66.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
65.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
64.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
62.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
61.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
61.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
60.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
60.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
59.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
59.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
58.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
57.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
57.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
57.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
57.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
56.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
55.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
55.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
54.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
53.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
52.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
52.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
52.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
51.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
50.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
50.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
50.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
49.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
49.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
49.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
48.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
48.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
48.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
48.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
48.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
47.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
47.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
45.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
45.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
44.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
43.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
43.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
42.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
41.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
41.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
41.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
41.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
41.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
39.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
39.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
38.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
37.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
37.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
37.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
36.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
36.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
36.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
35.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
31.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
31.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
30.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CAPZA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.0
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
140.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
130.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
111.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
111.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
104.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
102.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
102.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
101.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
93.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
92.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
89.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
87.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
84.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
82.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
79.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
78.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
76.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
75.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
71.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
71.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
71.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
70.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
70.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
68.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
68.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
68.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
68.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
67.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
67.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
67.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
67.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
63.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
62.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
62.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
61.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
61.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
60.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
59.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
59.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
57.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
57.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
56.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
56.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
55.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
54.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
54.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
53.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
53.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
53.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
52.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
52.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
52.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
52.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
51.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
51.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
50.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
50.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
50.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
50.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
50.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
49.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
49.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
49.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
48.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
48.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
48.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
48.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
48.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
47.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
47.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
47.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
47.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
47.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
46.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
46.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
46.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
46.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
46.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
45.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
45.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
45.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
45.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
45.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
44.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
44.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
43.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
42.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
41.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
41.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
40.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
40.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
40.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
40.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
38.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
38.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
38.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
36.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
36.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
36.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
35.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
35.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
35.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
34.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
34.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
33.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
33.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
33.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
32.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
32.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
0.5
724
Normal
0.4
943
Tumor
0.4
536
Normal
0.4
492
Normal
0.3
434
Normal
0.3
524
Normal
0.3
917
Tumor
0.3
211
Tumor
0.3
727
Tumor
0.3
311
Tumor
0.3
966
Normal
0.3
685
Tumor
0.3
686
Normal
0.3
778
Normal
0.3
951
Tumor
0.3
125
Tumor
0.3
573
Tumor
0.3
661
Tumor
0.2
823
Tumor
0.2
185
Tumor
0.2
498
Normal
0.2
415
Tumor
0.2
525
Tumor
0.2
916
Normal
0.2
1021
Tumor
0.2
224
Normal
0.2
954
Normal
0.2
478
Normal
0.2
387
Tumor
0.2
223
Tumor
0.2
952
Normal
0.2
861
Tumor
0.2
343
Tumor
0.2
467
Tumor
0.2
953
Tumor
0.2
814
Normal
0.2
716
Normal
0.2
126
Normal
0.2
212
Normal
0.2
663
Tumor
0.1
723
Tumor
0.1
461
Tumor
0.1
188
Normal
0.1
444
Normal
0.1
516
Normal
0.1
737
Tumor
0.1
741
Tumor
0.1
284
Normal
0.1
262
Normal
0.1
535
Tumor
0.1
1027
Tumor
0.1
384
Normal
0.1
968
Normal
0.1
395
Tumor
0.1
518
Normal
0.1
863
Tumor
0.1
746
Normal
0.1
425
Tumor
0.1
721
Tumor
0.1
192
Normal
0.1
978
Normal
0.1
213
Tumor
0.1
491
Tumor
0.1
696
Normal
0.1
728
Normal
0.1
738
Normal
0.1
383
Tumor
0.1
1028
Normal
0.1
364
Normal
0.1
852
Normal
0.1
963
Tumor
0.1
375
Tumor
0.1
455
Tumor
0.1
528
Normal
0.1
416
Normal
0.1
286
Normal
0.1
355
Tumor
0.1
914
Normal
0.1
925
Tumor
0.1
756
Normal
0.1
628
Normal
0.1
432
Normal
0.1
911
Tumor
0.1
958
Normal
0.1
938
Normal
0.1
386
Normal
0.1
1015
Tumor
0.1
883
Tumor
0.1
714
Normal
0.1
944
Normal
0.1
451
Tumor
0.1
924
Normal
0.1
472
Normal
0.1
956
Normal
0.1
124
Normal
0.1
713
Tumor
0.1
328
Normal
0.1
494
Normal
0.1
367
Tumor
0.1
742
Normal
0.1
926
Normal
0.1
695
Tumor
0.1
412
Normal
0.1
447
Tumor
0.1
493
Tumor
0.1
231
Tumor
0.1
526
Normal
0.1
538
Normal
0.1
975
Tumor
0.0
112
Tumor
0.0
468
Normal
0.0
862
Normal
0.0
918
Normal
0.0
385
Tumor
0.0
514
Normal
0.0
868
Normal
0.0
272
Normal
0.0
138
Normal
0.0
362
Normal
0.0
976
Normal
0.0
1031
Tumor
0.0
268
Normal
0.0
527
Tumor
0.0
195
Tumor
0.0
554
Normal
0.0
396
Normal
0.0
228
Normal
0.0
482
Normal
0.0
867
Tumor
0.0
617
Tumor
0.0
922
Normal
0.0
278
Normal
0.0
955
Tumor
0.0
456
Normal
0.0
817
Tumor
0.0
965
Tumor
0.0
391
Tumor
0.0
984
Normal
0.0
356
Normal
0.0
1042
Normal
0.0
366
Normal
0.0
352
Normal
0.0
488
Normal
0.0
146
Normal
0.0
553
Tumor
0.0
187
Tumor
0.0
111
Normal
0.0
517
Tumor
0.0
365
Tumor
0.0
368
Normal
0.0
258
Normal
0.0
497
Tumor
0.0
851
Tumor
0.0
857
Tumor
0.0
422
Normal
0.0
546
Normal
0.0
344
Normal
0.0
484
Normal
0.0
786
Normal
0.0
414
Normal
0.0
448
Normal
0.0
217
Tumor
0.0
915
Tumor
0.0
424
Normal
0.0
298
Normal
0.0
332
Normal
0.0
636
Normal
0.0
785
Tumor
0.0
777
Tumor
0.0
394
Normal
0.0
327
Tumor
0.0
618
Normal
0.0
744
Normal
0.0
537
Tumor
0.0
114
Normal
0.0
1016
Normal
0.0
218
Normal
0.0
113
Tumor
0.0
697
Tumor
0.0
874
Normal
0.0
172
Normal
0.0
1044
Normal
0.0
964
Normal
0.0
662
Normal
0.0
474
Normal
0.0
571
Tumor
0.0
755
Tumor
0.0
358
Normal
0.0
858
Normal
0.0
483
Tumor
0.0
698
Normal
0.0
462
Normal
0.0
563
Tumor
0.0
534
Normal
0.0
1032
Normal
0.0
477
Tumor
0.0
923
Tumor
0.0
672
Normal
0.0
1041
Tumor
0.0
864
Normal
0.0
1013
Tumor
-0.1
162
Normal
-0.1
1026
Normal
-0.1
664
Normal
-0.1
1022
Normal
-0.1
642
Normal
-0.1
977
Tumor
-0.1
558
Normal
-0.1
426
Normal
-0.1
1014
Normal
-0.1
128
Normal
-0.1
913
Tumor
-0.1
354
Normal
-0.1
312
Normal
-0.1
421
Tumor
-0.1
123
Tumor
-0.1
533
Tumor
-0.1
471
Tumor
-0.1
465
Tumor
-0.1
816
Normal
-0.1
866
Normal
-0.1
865
Tumor
-0.1
616
Normal
-0.1
433
Tumor
-0.1
388
Normal
-0.1
464
Normal
-0.1
142
Normal
-0.1
428
Normal
-0.1
341
Tumor
-0.1
671
Tumor
-0.1
627
Tumor
-0.1
937
Tumor
-0.1
392
Normal
-0.1
745
Tumor
-0.1
481
Tumor
-0.1
314
Normal
-0.1
813
Tumor
-0.1
132
Normal
-0.1
466
Normal
-0.1
545
Tumor
-0.1
568
Normal
-0.1
557
Tumor
-0.1
722
Normal
-0.1
214
Normal
-0.1
572
Normal
-0.1
648
Normal
-0.1
136
Normal
-0.1
1025
Tumor
-0.1
487
Tumor
-0.1
436
Normal
-0.1
171
Tumor
-0.1
148
Normal
-0.1
884
Normal
-0.1
574
Normal
-0.1
824
Normal
-0.1
196
Normal
-0.1
1046
Normal
-0.1
881
Tumor
-0.1
186
Normal
-0.1
463
Tumor
-0.1
513
Tumor
-0.1
982
Normal
-0.1
431
Tumor
-0.1
715
Tumor
-0.1
567
Tumor
-0.1
261
Tumor
-0.1
297
Tumor
-0.1
452
Normal
-0.1
878
Normal
-0.1
257
Tumor
-0.1
423
Tumor
-0.1
222
Normal
-0.1
376
Normal
-0.1
446
Normal
-0.2
1045
Tumor
-0.2
232
Normal
-0.2
882
Normal
-0.2
342
Normal
-0.2
137
Tumor
-0.2
427
Tumor
-0.2
127
Tumor
-0.2
564
Normal
-0.2
147
Tumor
-0.2
983
Tumor
-0.2
363
Tumor
-0.2
353
Tumor
-0.2
981
Tumor
-0.2
473
Tumor
-0.2
665
Tumor
-0.2
443
Tumor
-0.2
666
Normal
-0.2
141
Tumor
-0.2
161
Tumor
-0.2
131
Tumor
-0.2
912
Normal
-0.2
921
Tumor
-0.2
635
Tumor
-0.2
145
Tumor
-0.2
877
Tumor
-0.2
615
Tumor
-0.2
515
Tumor
-0.2
361
Tumor
-0.2
135
Tumor
-0.2
191
Tumor
-0.3
641
Tumor
-0.3
818
Normal
-0.3
413
Tumor
-0.3
647
Tumor
-0.3
873
Tumor
-0.3
271
Tumor
-0.3
277
Tumor
-0.3
285
Tumor
-0.3
313
Tumor
-0.3
523
Tumor
-0.3
227
Tumor
-0.3
351
Tumor
-0.3
221
Tumor
-0.3
1043
Tumor
-0.3
435
Tumor
-0.4
411
Tumor
-0.4
967
Tumor
-0.4
331
Tumor
-0.4
815
Tumor
-0.4
957
Tumor
-0.4
743
Tumor
-0.4
393
Tumor
-0.5
267
Tumor
-0.5
445
Tumor
-0.5
357
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.