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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR77 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
39.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR77 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.9
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
38.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.6
741
Tumor
0.6
571
Tumor
0.5
685
Tumor
0.5
981
Tumor
0.4
965
Tumor
0.4
393
Tumor
0.4
865
Tumor
0.4
313
Tumor
0.4
391
Tumor
0.4
951
Tumor
0.3
967
Tumor
0.3
112
Tumor
0.3
482
Normal
0.3
123
Tumor
0.3
1041
Tumor
0.3
445
Tumor
0.3
744
Normal
0.3
357
Tumor
0.3
723
Tumor
0.3
413
Tumor
0.2
737
Tumor
0.2
815
Tumor
0.2
128
Normal
0.2
436
Normal
0.2
358
Normal
0.2
137
Tumor
0.2
742
Normal
0.2
222
Normal
0.2
745
Tumor
0.2
483
Tumor
0.2
1025
Tumor
0.2
261
Tumor
0.2
642
Normal
0.2
218
Normal
0.2
663
Tumor
0.2
1016
Normal
0.2
375
Tumor
0.2
952
Normal
0.2
472
Normal
0.2
342
Normal
0.2
145
Tumor
0.2
196
Normal
0.2
431
Tumor
0.2
861
Tumor
0.2
728
Normal
0.2
615
Tumor
0.2
983
Tumor
0.2
746
Normal
0.2
192
Normal
0.1
873
Tumor
0.1
755
Tumor
0.1
425
Tumor
0.1
113
Tumor
0.1
114
Normal
0.1
231
Tumor
0.1
131
Tumor
0.1
487
Tumor
0.1
185
Tumor
0.1
452
Normal
0.1
451
Tumor
0.1
727
Tumor
0.1
387
Tumor
0.1
162
Normal
0.1
874
Normal
0.1
214
Normal
0.1
283
Tumor
0.1
618
Normal
0.1
982
Normal
0.1
286
Normal
0.1
111
Normal
0.1
925
Tumor
0.1
535
Tumor
0.1
923
Tumor
0.1
627
Tumor
0.1
353
Tumor
0.1
124
Normal
0.1
661
Tumor
0.1
186
Normal
0.1
298
Normal
0.1
125
Tumor
0.1
1013
Tumor
0.1
297
Tumor
0.1
127
Tumor
0.1
366
Normal
0.1
877
Tumor
0.1
527
Tumor
0.1
666
Normal
0.1
132
Normal
0.1
484
Normal
0.1
327
Tumor
0.1
515
Tumor
0.1
573
Tumor
0.1
617
Tumor
0.1
466
Normal
0.1
915
Tumor
0.1
217
Tumor
0.1
351
Tumor
0.1
411
Tumor
0.1
665
Tumor
0.1
257
Tumor
0.1
777
Tumor
0.1
953
Tumor
0.1
383
Tumor
0.1
272
Normal
0.1
956
Normal
0.1
394
Normal
0.1
518
Normal
0.0
534
Normal
0.0
213
Tumor
0.0
648
Normal
0.0
354
Normal
0.0
232
Normal
0.0
361
Tumor
0.0
883
Tumor
0.0
148
Normal
0.0
456
Normal
0.0
862
Normal
0.0
395
Tumor
0.0
464
Normal
0.0
816
Normal
0.0
738
Normal
0.0
955
Tumor
0.0
465
Tumor
0.0
554
Normal
0.0
267
Tumor
0.0
628
Normal
0.0
386
Normal
0.0
428
Normal
0.0
497
Tumor
0.0
966
Normal
0.0
1021
Tumor
0.0
172
Normal
0.0
1015
Tumor
0.0
635
Tumor
0.0
343
Tumor
0.0
868
Normal
0.0
227
Tumor
0.0
572
Normal
0.0
813
Tumor
0.0
424
Normal
0.0
392
Normal
0.0
278
Normal
0.0
636
Normal
0.0
546
Normal
0.0
924
Normal
0.0
616
Normal
0.0
262
Normal
0.0
715
Tumor
0.0
228
Normal
0.0
388
Normal
0.0
463
Tumor
0.0
468
Normal
0.0
136
Normal
0.0
488
Normal
0.0
743
Tumor
0.0
344
Normal
0.0
462
Normal
0.0
223
Tumor
0.0
367
Tumor
0.0
864
Normal
0.0
258
Normal
0.0
481
Tumor
0.0
427
Tumor
0.0
695
Tumor
0.0
911
Tumor
0.0
331
Tumor
0.0
1045
Tumor
0.0
365
Tumor
0.0
432
Normal
0.0
426
Normal
0.0
477
Tumor
0.0
574
Normal
0.0
224
Normal
0.0
396
Normal
0.0
537
Tumor
-0.1
474
Normal
-0.1
146
Normal
-0.1
867
Tumor
-0.1
558
Normal
-0.1
135
Tumor
-0.1
461
Tumor
-0.1
455
Tumor
-0.1
538
Normal
-0.1
914
Normal
-0.1
664
Normal
-0.1
191
Tumor
-0.1
498
Normal
-0.1
161
Tumor
-0.1
126
Normal
-0.1
414
Normal
-0.1
1026
Normal
-0.1
368
Normal
-0.1
138
Normal
-0.1
866
Normal
-0.1
568
Normal
-0.1
443
Tumor
-0.1
446
Normal
-0.1
1022
Normal
-0.1
563
Tumor
-0.1
376
Normal
-0.1
1031
Tumor
-0.1
528
Normal
-0.1
494
Normal
-0.1
433
Tumor
-0.1
385
Tumor
-0.1
314
Normal
-0.1
328
Normal
-0.1
312
Normal
-0.1
448
Normal
-0.1
332
Normal
-0.1
662
Normal
-0.1
756
Normal
-0.1
564
Normal
-0.1
975
Tumor
-0.1
943
Tumor
-0.1
384
Normal
-0.1
421
Tumor
-0.1
352
Normal
-0.1
722
Normal
-0.1
284
Normal
-0.1
491
Tumor
-0.1
696
Normal
-0.1
984
Normal
-0.1
141
Tumor
-0.1
938
Normal
-0.1
978
Normal
-0.1
195
Tumor
-0.1
513
Tumor
-0.1
268
Normal
-0.1
285
Tumor
-0.1
1028
Normal
-0.1
557
Tumor
-0.1
1043
Tumor
-0.1
467
Tumor
-0.1
142
Normal
-0.1
478
Normal
-0.1
968
Normal
-0.1
356
Normal
-0.2
724
Normal
-0.2
221
Tumor
-0.2
976
Normal
-0.2
863
Tumor
-0.2
514
Normal
-0.2
493
Tumor
-0.2
1014
Normal
-0.2
964
Normal
-0.2
957
Tumor
-0.2
362
Normal
-0.2
647
Tumor
-0.2
525
Tumor
-0.2
1044
Normal
-0.2
277
Tumor
-0.2
435
Tumor
-0.2
672
Normal
-0.2
814
Normal
-0.2
422
Normal
-0.2
416
Normal
-0.2
698
Normal
-0.2
858
Normal
-0.2
188
Normal
-0.2
434
Normal
-0.2
412
Normal
-0.2
878
Normal
-0.2
697
Tumor
-0.2
786
Normal
-0.2
921
Tumor
-0.2
516
Normal
-0.2
785
Tumor
-0.2
171
Tumor
-0.2
212
Normal
-0.2
958
Normal
-0.2
187
Tumor
-0.2
492
Normal
-0.2
1042
Normal
-0.2
523
Tumor
-0.2
311
Tumor
-0.2
553
Tumor
-0.2
912
Normal
-0.2
824
Normal
-0.2
364
Normal
-0.2
716
Normal
-0.2
963
Tumor
-0.3
882
Normal
-0.3
714
Normal
-0.3
545
Tumor
-0.3
147
Tumor
-0.3
823
Tumor
-0.3
977
Tumor
-0.3
721
Tumor
-0.3
526
Normal
-0.3
944
Normal
-0.3
926
Normal
-0.3
778
Normal
-0.3
671
Tumor
-0.3
1032
Normal
-0.3
444
Normal
-0.3
713
Tumor
-0.3
913
Tumor
-0.3
447
Tumor
-0.3
423
Tumor
-0.3
536
Normal
-0.3
355
Tumor
-0.3
918
Normal
-0.3
567
Tumor
-0.3
686
Normal
-0.3
818
Normal
-0.3
363
Tumor
-0.4
857
Tumor
-0.4
271
Tumor
-0.4
341
Tumor
-0.4
916
Normal
-0.4
641
Tumor
-0.4
851
Tumor
-0.4
211
Tumor
-0.4
415
Tumor
-0.4
884
Normal
-0.4
881
Tumor
-0.4
817
Tumor
-0.4
937
Tumor
-0.4
922
Normal
-0.5
471
Tumor
-0.5
533
Tumor
-0.5
852
Normal
-0.5
473
Tumor
-0.5
954
Normal
-0.5
517
Tumor
-0.5
1046
Normal
-0.6
917
Tumor
-0.6
524
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
