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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
QSOX1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1060.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
710.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
603.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
567.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
539.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
461.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
434.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
425.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
384.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
382.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
365.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
325.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
320.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
317.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
310.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
290.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
280.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
252.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
230.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
228.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
208.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
201.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
188.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
188.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
186.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
181.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
180.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
176.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
175.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
172.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
172.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
163.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
157.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
153.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
145.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
145.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
140.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
138.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
137.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
137.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
133.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
132.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
131.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
126.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
123.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
123.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
119.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
118.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
115.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
111.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
111.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
109.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
103.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
103.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
101.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
96.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
91.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
91.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
90.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
90.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
88.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
86.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
86.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
82.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
81.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
78.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
77.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
75.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
73.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
72.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
71.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
69.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
67.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
66.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
65.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
65.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
64.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
64.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
62.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
61.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
61.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
59.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
58.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
58.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
58.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
55.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
53.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
51.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
50.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
48.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
47.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
46.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
46.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
46.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
45.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
44.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
40.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
38.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
38.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
38.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
30.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
QSOX1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.4
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
576.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
269.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
264.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
213.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
189.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
160.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
155.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
147.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
135.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
133.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
126.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
122.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
98.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
94.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
83.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
83.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
82.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
74.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
72.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
69.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
69.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
65.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
64.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
62.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
58.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
55.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
55.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
34.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
34.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
2.4
425
Tumor
2.3
343
Tumor
2.0
545
Tumor
1.8
877
Tumor
1.7
671
Tumor
1.6
917
Tumor
1.5
313
Tumor
1.5
975
Tumor
1.5
881
Tumor
1.3
192
Normal
1.2
463
Tumor
1.1
385
Tumor
1.1
823
Tumor
1.1
713
Tumor
1.0
447
Tumor
0.9
813
Tumor
0.9
743
Tumor
0.9
491
Tumor
0.9
444
Normal
0.8
311
Tumor
0.8
395
Tumor
0.8
283
Tumor
0.8
384
Normal
0.8
224
Normal
0.7
471
Tumor
0.7
697
Tumor
0.7
817
Tumor
0.7
527
Tumor
0.7
573
Tumor
0.7
443
Tumor
0.7
217
Tumor
0.7
958
Normal
0.6
983
Tumor
0.6
375
Tumor
0.6
221
Tumor
0.5
223
Tumor
0.5
211
Tumor
0.5
536
Normal
0.5
498
Normal
0.4
188
Normal
0.4
516
Normal
0.4
815
Tumor
0.4
277
Tumor
0.4
331
Tumor
0.4
383
Tumor
0.4
672
Normal
0.4
664
Normal
0.3
268
Normal
0.3
483
Tumor
0.3
478
Normal
0.3
497
Tumor
0.3
1044
Normal
0.3
185
Tumor
0.3
852
Normal
0.3
467
Tumor
0.3
344
Normal
0.3
814
Normal
0.3
354
Normal
0.3
916
Normal
0.3
386
Normal
0.3
314
Normal
0.3
943
Tumor
0.3
362
Normal
0.2
455
Tumor
0.2
126
Normal
0.2
715
Tumor
0.2
355
Tumor
0.2
213
Tumor
0.2
524
Normal
0.2
924
Normal
0.2
976
Normal
0.2
393
Tumor
0.2
125
Tumor
0.2
392
Normal
0.2
187
Tumor
0.2
328
Normal
0.2
332
Normal
0.2
523
Tumor
0.2
923
Tumor
0.2
574
Normal
0.2
722
Normal
0.1
421
Tumor
0.1
394
Normal
0.1
195
Tumor
0.1
191
Tumor
0.1
262
Normal
0.1
227
Tumor
0.1
186
Normal
0.1
284
Normal
0.1
918
Normal
0.1
744
Normal
0.1
1042
Normal
0.1
1025
Tumor
0.1
434
Normal
0.1
816
Normal
0.1
666
Normal
0.1
535
Tumor
0.1
147
Tumor
0.1
492
Normal
0.1
716
Normal
0.1
212
Normal
0.1
228
Normal
0.1
145
Tumor
0.1
494
Normal
0.0
558
Normal
0.0
538
Normal
0.0
364
Normal
0.0
648
Normal
0.0
146
Normal
0.0
742
Normal
0.0
785
Tumor
0.0
342
Normal
0.0
874
Normal
0.0
818
Normal
0.0
366
Normal
0.0
132
Normal
0.0
428
Normal
0.0
312
Normal
0.0
857
Tumor
0.0
862
Normal
0.0
424
Normal
0.0
363
Tumor
0.0
426
Normal
0.0
982
Normal
0.0
884
Normal
0.0
388
Normal
0.0
138
Normal
0.0
448
Normal
0.0
493
Tumor
0.0
391
Tumor
0.0
368
Normal
0.0
723
Tumor
0.0
956
Normal
0.0
1028
Normal
0.0
433
Tumor
0.0
1045
Tumor
0.0
546
Normal
0.0
214
Normal
0.0
396
Normal
0.0
352
Normal
0.0
297
Tumor
0.0
572
Normal
0.0
358
Normal
-0.1
984
Normal
-0.1
938
Normal
-0.1
422
Normal
-0.1
468
Normal
-0.1
662
Normal
-0.1
863
Tumor
-0.1
298
Normal
-0.1
882
Normal
-0.1
865
Tumor
-0.1
963
Tumor
-0.1
721
Tumor
-0.1
142
Normal
-0.1
376
Normal
-0.1
218
Normal
-0.1
685
Tumor
-0.1
466
Normal
-0.1
488
Normal
-0.1
124
Normal
-0.1
365
Tumor
-0.1
278
Normal
-0.1
464
Normal
-0.1
361
Tumor
-0.1
964
Normal
-0.1
474
Normal
-0.1
415
Tumor
-0.1
922
Normal
-0.1
528
Normal
-0.1
642
Normal
-0.1
563
Tumor
-0.2
461
Tumor
-0.2
416
Normal
-0.2
272
Normal
-0.2
414
Normal
-0.2
353
Tumor
-0.2
553
Tumor
-0.2
1022
Normal
-0.2
162
Normal
-0.2
452
Normal
-0.2
1046
Normal
-0.2
1021
Tumor
-0.2
968
Normal
-0.2
738
Normal
-0.2
914
Normal
-0.2
232
Normal
-0.2
515
Tumor
-0.2
636
Normal
-0.2
686
Normal
-0.2
868
Normal
-0.2
148
Normal
-0.2
661
Tumor
-0.2
978
Normal
-0.2
824
Normal
-0.2
954
Normal
-0.2
514
Normal
-0.2
136
Normal
-0.2
525
Tumor
-0.2
698
Normal
-0.2
878
Normal
-0.2
616
Normal
-0.2
261
Tumor
-0.2
1032
Normal
-0.2
641
Tumor
-0.2
745
Tumor
-0.2
627
Tumor
-0.2
864
Normal
-0.2
568
Normal
-0.2
756
Normal
-0.2
786
Normal
-0.2
432
Normal
-0.2
286
Normal
-0.2
618
Normal
-0.3
858
Normal
-0.3
135
Tumor
-0.3
271
Tumor
-0.3
534
Normal
-0.3
866
Normal
-0.3
482
Normal
-0.3
172
Normal
-0.3
1041
Tumor
-0.3
966
Normal
-0.3
456
Normal
-0.3
728
Normal
-0.3
196
Normal
-0.3
341
Tumor
-0.3
778
Normal
-0.3
462
Normal
-0.3
484
Normal
-0.3
665
Tumor
-0.3
137
Tumor
-0.3
912
Normal
-0.3
472
Normal
-0.3
696
Normal
-0.3
746
Normal
-0.3
564
Normal
-0.3
1027
Tumor
-0.3
557
Tumor
-0.3
526
Normal
-0.3
926
Normal
-0.3
446
Normal
-0.3
141
Tumor
-0.3
222
Normal
-0.3
161
Tumor
-0.3
951
Tumor
-0.3
663
Tumor
-0.3
873
Tumor
-0.3
628
Normal
-0.3
412
Normal
-0.3
327
Tumor
-0.3
356
Normal
-0.3
554
Normal
-0.4
714
Normal
-0.4
944
Normal
-0.4
351
Tumor
-0.4
1014
Normal
-0.4
921
Tumor
-0.4
1016
Normal
-0.4
647
Tumor
-0.4
427
Tumor
-0.4
431
Tumor
-0.4
1026
Normal
-0.4
423
Tumor
-0.4
111
Normal
-0.4
114
Normal
-0.4
517
Tumor
-0.4
913
Tumor
-0.4
518
Normal
-0.4
387
Tumor
-0.4
413
Tumor
-0.5
967
Tumor
-0.5
957
Tumor
-0.5
952
Normal
-0.5
128
Normal
-0.5
436
Normal
-0.5
231
Tumor
-0.5
367
Tumor
-0.5
615
Tumor
-0.5
851
Tumor
-0.5
571
Tumor
-0.5
487
Tumor
-0.5
883
Tumor
-0.5
481
Tumor
-0.5
953
Tumor
-0.6
955
Tumor
-0.6
741
Tumor
-0.6
695
Tumor
-0.6
915
Tumor
-0.6
1043
Tumor
-0.6
445
Tumor
-0.6
258
Normal
-0.6
567
Tumor
-0.6
727
Tumor
-0.6
451
Tumor
-0.6
937
Tumor
-0.6
617
Tumor
-0.6
357
Tumor
-0.6
737
Tumor
-0.6
724
Normal
-0.7
477
Tumor
-0.7
981
Tumor
-0.7
171
Tumor
-0.7
513
Tumor
-0.7
777
Tumor
-0.7
537
Tumor
-0.7
867
Tumor
-0.7
911
Tumor
-0.7
473
Tumor
-0.7
977
Tumor
-0.7
1031
Tumor
-0.7
112
Tumor
-0.8
113
Tumor
-0.8
127
Tumor
-0.8
285
Tumor
-0.8
755
Tumor
-0.8
465
Tumor
-0.8
635
Tumor
-0.8
965
Tumor
-0.9
861
Tumor
-0.9
1015
Tumor
-0.9
411
Tumor
-1.0
925
Tumor
-1.0
257
Tumor
-1.0
123
Tumor
-1.0
435
Tumor
-1.1
533
Tumor
-1.1
267
Tumor
-1.1
1013
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.