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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
15.5
nTPM
HPA Brain:
72.2
nTPM
GTEx:
15.5
nTPM
FANTOM5:
1.5
Scaled Tags Per Million
Pig:
22.9
nTPM
Mouse:
25.0
nTPM
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 40.8
2666
Male, age 74, left hemisphere
85.8
2219
Male, age 76, both hemispheres
50.5
1827
Male, age 72, unknown
47.4
2586
Male, age 75, left hemisphere
43.7
2828
Female, age 72, unknown
38.3
1870
Female, age 42, unknown
33.7
2411
Female, age 72, unknown
33.1
1833
Male, age 53, unknown
30.9
1830
Male, age 51, unknown
26.6
2019
Male, age 18, unknown
18.1
Dorsal raphe nucleus nTPM: 38.5
2047
Male, age 72, unknown
49.3
1828
Male, age 53, unknown
42.7
2298
Female, age 72, unknown
39.0
2750
Male, age 76, both hemispheres
33.3
2016
Female, age 72, unknown
28.3
Inferior colliculus nTPM: 41.9
2097
Female, age 72, unknown
45.7
1848
Female, age 42, unknown
42.0
2849
Male, age 72, unknown
40.5
1890
Male, age 53, unknown
39.5
Median raphe nucleus nTPM: 49.2
2220
Male, age 76, midline
49.2
Periaquaductal grey, anterior nTPM: 72.2
2502
Female, age 75, unknown
111.8
1947
Male, age 18, unknown
56.4
1795
Male, age 51, unknown
48.3
Periaquaductal grey, dorsal nTPM: 36.3
1840
Male, age 53, unknown
44.1
1831
Male, age 72, unknown
37.5
2464
Female, age 72, unknown
32.2
2850
Male, age 76, both hemispheres
31.6
Periaquaductal grey, lateral nTPM: 31.1
2053
Male, age 18, unknown
37.0
2140
Male, age 76, both hemispheres
34.0
2272
Male, age 74, both hemispheres
22.4
Pretectal area nTPM: 32.7
2825
Male, age 18, unknown
50.4
1816
Male, age 51, unknown
43.3
2224
Female, age 72, unknown
39.8
1944
Female, age 72, unknown
36.6
2667
Female, age 75, unknown
34.4
2316
Male, age 76, right hemisphere
31.4
2007
Male, age 72, unknown
30.6
1815
Male, age 53, unknown
27.4
2407
Male, age 75, both hemispheres
26.8
1817
Female, age 42, unknown
25.7
2273
Male, age 74, both hemispheres
13.1
Red nucleus nTPM: 25.4
2584
Male, age 75, left hemisphere
33.9
2769
Male, age 72, unknown
29.7
2227
Male, age 72, unknown
29.6
1821
Female, age 72, unknown
29.3
1954
Female, age 42, unknown
28.5
2823
Male, age 76, right hemisphere
28.1
1904
Male, age 53, unknown
24.2
2588
Male, age 74, left hemisphere
22.5
1865
Male, age 51, unknown
22.2
2503
Female, age 72, unknown
21.2
2785
Male, age 18, unknown
19.9
2725
Female, age 75, unknown
15.6
Substantia nigra nTPM: 49.7
1916
Female, age 42, unknown
82.0
2665
Male, age 74, both hemispheres
65.5
1851
Male, age 51, unknown
59.6
2699
Male, age 18, unknown
57.1
2241
Male, age 72, unknown
49.1
1941
Male, age 53, unknown
45.4
2409
Female, age 72, unknown
42.7
1889
Female, age 72, unknown
35.8
2583
Male, age 75, right hemisphere
33.6
2590
Female, age 75, unknown
25.9
Superior colliculus nTPM: 35.6
2668
Female, age 75, unknown
50.9
1796
Male, age 53, unknown
49.0
2664
Male, age 75, both hemispheres
45.3
2261
Male, age 18, unknown
42.5
1895
Male, age 76, right hemisphere
39.0
2087
Female, age 72, unknown
37.3
1839
Male, age 51, unknown
37.2
2587
Male, age 74, left hemisphere
27.0
1913
Female, age 42, unknown
14.8
1995
Male, age 72, unknown
13.5
Ventral tegmental area nTPM: 48.1
2218
Male, age 76, both hemispheres
61.0
1915
Female, age 42, unknown
55.9
1942
Male, age 51, unknown
52.1
2410
Female, age 72, unknown
49.4
2021
Male, age 53, unknown
35.8
2223
Female, age 72, unknown
34.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 15.5
Samples: 139
Max nTPM: 49.8
Min nTPM: 0.2
Std nTPM: 11.9
Median nTPM: 12.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
49.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
45.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
43.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
43.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
38.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
37.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
36.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
35.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
34.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
34.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
34.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
33.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
32.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
32.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
32.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
32.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
32.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
31.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
31.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
31.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
30.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
30.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
30.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
28.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
28.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
27.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
27.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
26.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
26.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
25.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
25.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
25.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
25.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
25.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
24.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
24.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
23.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
22.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
22.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
22.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
22.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
22.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
21.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
21.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
21.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
21.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
21.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
20.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
20.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
19.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
19.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
19.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
19.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
19.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
19.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
18.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
18.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
18.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
16.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
16.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
15.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
14.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
14.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
14.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
14.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
14.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
12.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
12.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
12.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
12.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
12.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
12.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
10.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
10.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
10.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
10.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
10.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
10.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
9.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
9.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
8.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
8.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
8.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
8.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
7.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
7.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
7.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
7.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
6.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
6.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
6.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
6.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
6.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
6.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
5.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
5.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
5.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
5.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
5.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
4.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
4.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
4.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
4.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
4.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
4.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
4.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
4.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
3.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
3.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
2.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
0.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
0.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
0.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
0.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.