MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.5 nTPM
HPA Brain:40.5 nTPM
GTEx:32.5 nTPM
FANTOM5:43.1 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:39.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2586 Male, age 75, left hemisphere 43.9
2019 Male, age 18, unknown 41.6
2219 Male, age 76, both hemispheres 37.7
2666 Male, age 74, left hemisphere 37.5
2411 Female, age 72, unknown 37.4
1827 Male, age 72, unknown 37.0
2828 Female, age 72, unknown 31.6
1833 Male, age 53, unknown 31.5
1870 Female, age 42, unknown 31.3
1830 Male, age 51, unknown 28.2
Dorsal raphe nucleus
nTPM: 36.4
2047 Male, age 72, unknown 40.3
1828 Male, age 53, unknown 38.6
2298 Female, age 72, unknown 38.1
2750 Male, age 76, both hemispheres 34.7
2016 Female, age 72, unknown 30.1
Inferior colliculus
nTPM: 32.4
1890 Male, age 53, unknown 35.2
2097 Female, age 72, unknown 33.5
1848 Female, age 42, unknown 30.5
2849 Male, age 72, unknown 30.4
Median raphe nucleus
nTPM: 35.1
2220 Male, age 76, midline 35.1
Periaquaductal grey, anterior
nTPM: 33.6
1795 Male, age 51, unknown 34.7
1947 Male, age 18, unknown 33.6
2502 Female, age 75, unknown 32.4
Periaquaductal grey, dorsal
nTPM: 27.5
1840 Male, age 53, unknown 28.6
2464 Female, age 72, unknown 28.6
2850 Male, age 76, both hemispheres 27.5
1831 Male, age 72, unknown 25.2
Periaquaductal grey, lateral
nTPM: 27.5
2272 Male, age 74, both hemispheres 30.5
2053 Male, age 18, unknown 27.7
2140 Male, age 76, both hemispheres 24.2
Pretectal area
nTPM: 35.9
1816 Male, age 51, unknown 44.6
1817 Female, age 42, unknown 44.2
2007 Male, age 72, unknown 44.0
1944 Female, age 72, unknown 39.7
2667 Female, age 75, unknown 38.0
1815 Male, age 53, unknown 37.1
2224 Female, age 72, unknown 32.3
2407 Male, age 75, both hemispheres 32.2
2273 Male, age 74, both hemispheres 29.1
2825 Male, age 18, unknown 28.4
2316 Male, age 76, right hemisphere 25.6
Red nucleus
nTPM: 33.3
1821 Female, age 72, unknown 39.6
2785 Male, age 18, unknown 37.1
2725 Female, age 75, unknown 35.2
2588 Male, age 74, left hemisphere 34.1
2503 Female, age 72, unknown 33.0
2584 Male, age 75, left hemisphere 32.8
2769 Male, age 72, unknown 32.3
1865 Male, age 51, unknown 31.6
1954 Female, age 42, unknown 31.4
1904 Male, age 53, unknown 31.3
2227 Male, age 72, unknown 31.3
2823 Male, age 76, right hemisphere 30.5
Substantia nigra
nTPM: 40.5
1916 Female, age 42, unknown 53.9
1851 Male, age 51, unknown 46.4
1941 Male, age 53, unknown 44.6
2241 Male, age 72, unknown 41.8
1889 Female, age 72, unknown 40.3
2665 Male, age 74, both hemispheres 38.0
2699 Male, age 18, unknown 37.2
2409 Female, age 72, unknown 36.6
2583 Male, age 75, right hemisphere 34.1
2590 Female, age 75, unknown 31.5
Superior colliculus
nTPM: 32.7
2668 Female, age 75, unknown 37.6
2664 Male, age 75, both hemispheres 35.7
2087 Female, age 72, unknown 35.6
1796 Male, age 53, unknown 34.5
1895 Male, age 76, right hemisphere 33.3
2261 Male, age 18, unknown 32.9
2587 Male, age 74, left hemisphere 30.5
1913 Female, age 42, unknown 30.0
1839 Male, age 51, unknown 29.8
1995 Male, age 72, unknown 27.2
Ventral tegmental area
nTPM: 35.3
2410 Female, age 72, unknown 41.0
1915 Female, age 42, unknown 40.7
2218 Male, age 76, both hemispheres 36.2
1942 Male, age 51, unknown 33.3
2223 Female, age 72, unknown 32.7
2021 Male, age 53, unknown 27.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.5
Samples: 139

Max nTPM: 75.5
Min nTPM: 17.9
Std nTPM: 8.7
Median nTPM: 30.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 58.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 56.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 54.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 51.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 51.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 51.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 50.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 50.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 46.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.1
FF:10158-103A5 76 years, female 43.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 38.9
Min nTPM: 18.5
Sample A Female 38.9
Sample B Female 20.2
Sample C Male 25.7
Sample D Male 18.5
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 32.1
Min nTPM: 21.2
Sample A Female 30.5
Sample B Female 21.2
Sample C Male 32.1
Sample D Male 28.8
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 25.2
Min nTPM: 19.2
Sample B Female 19.2
Sample C Male 25.2
Sample D Male 19.4
Superior colliculi
nTPM: 29.9
Samples: 4

Max nTPM: 39.9
Min nTPM: 24.2
Sample A Female 39.9
Sample B Female 24.2
Sample C Male 31.1
Sample D Male 24.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.8
Samples: 4

Max nTPM: 41.3
Min nTPM: 37.3
Sample A Male 40.0
Sample B Male 40.5
Sample C Female 37.3
Sample D Female 41.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
100144553 Antisense, RP_110421_03_H04, Mouse strain C57BL/6J (56 days, male) 0.4

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