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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRRC42 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
87.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
71.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
64.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
60.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
59.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
53.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
53.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
52.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
51.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
51.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
48.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
47.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
47.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
45.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
41.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
33.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRRC42 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
231
Samples
Sample
Description
TPM
DO50840
0 years, male, NA, stage:2, alive, 330 days
151.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
124.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
80.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
79.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
68.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
52.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
48.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
44.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
43.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
40.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
34.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
33.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
2.2
211
Tumor
2.1
413
Tumor
1.3
425
Tumor
1.2
487
Tumor
1.2
741
Tumor
1.0
1027
Tumor
0.9
535
Tumor
0.9
123
Tumor
0.9
537
Tumor
0.9
1022
Normal
0.8
965
Tumor
0.8
1021
Tumor
0.7
865
Tumor
0.7
1042
Normal
0.7
1041
Tumor
0.7
427
Tumor
0.7
957
Tumor
0.6
737
Tumor
0.6
714
Normal
0.6
387
Tumor
0.6
533
Tumor
0.5
497
Tumor
0.5
975
Tumor
0.5
685
Tumor
0.4
1044
Normal
0.4
1031
Tumor
0.4
721
Tumor
0.4
723
Tumor
0.3
963
Tumor
0.3
1025
Tumor
0.3
976
Normal
0.3
744
Normal
0.3
545
Tumor
0.3
715
Tumor
0.3
967
Tumor
0.3
112
Tumor
0.3
127
Tumor
0.3
983
Tumor
0.3
113
Tumor
0.2
977
Tumor
0.2
728
Normal
0.2
742
Normal
0.2
696
Normal
0.2
716
Normal
0.2
966
Normal
0.2
722
Normal
0.2
968
Normal
0.2
1043
Tumor
0.2
862
Normal
0.1
391
Tumor
0.1
488
Normal
0.1
861
Tumor
0.1
1045
Tumor
0.1
964
Normal
0.1
958
Normal
0.1
493
Tumor
0.1
447
Tumor
0.1
738
Normal
0.1
484
Normal
0.1
494
Normal
0.1
864
Normal
0.0
873
Tumor
0.0
125
Tumor
0.0
393
Tumor
0.0
874
Normal
0.0
111
Normal
0.0
492
Normal
0.0
421
Tumor
0.0
1046
Normal
0.0
227
Tumor
-0.1
1013
Tumor
-0.1
114
Normal
-0.1
283
Tumor
-0.1
395
Tumor
-0.1
1032
Normal
-0.1
536
Normal
-0.1
698
Normal
-0.1
1026
Normal
-0.1
868
Normal
-0.1
553
Tumor
-0.1
1028
Normal
-0.2
498
Normal
-0.2
224
Normal
-0.2
528
Normal
-0.2
866
Normal
-0.2
534
Normal
-0.2
385
Tumor
-0.2
867
Tumor
-0.2
697
Tumor
-0.2
491
Tumor
-0.3
727
Tumor
-0.3
483
Tumor
-0.3
984
Normal
-0.3
422
Normal
-0.3
863
Tumor
-0.3
423
Tumor
-0.3
284
Normal
-0.3
546
Normal
-0.3
686
Normal
-0.3
128
Normal
-0.3
424
Normal
-0.3
212
Normal
-0.4
426
Normal
-0.4
228
Normal
-0.4
1016
Normal
-0.4
286
Normal
-0.4
124
Normal
-0.4
392
Normal
-0.4
386
Normal
-0.4
978
Normal
-0.4
982
Normal
-0.4
414
Normal
-0.4
394
Normal
-0.4
527
Tumor
-0.4
428
Normal
-0.4
396
Normal
-0.4
713
Tumor
-0.4
388
Normal
-0.4
1015
Tumor
-0.4
448
Normal
-0.4
554
Normal
-0.4
223
Tumor
-0.5
1014
Normal
-0.5
538
Normal
-0.5
126
Normal
-0.5
743
Tumor
-0.5
724
Normal
-0.6
285
Tumor
-0.7
981
Tumor
-0.8
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
615
Tumor
N/A
857
Tumor
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
