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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM59 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
233.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
911.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
746.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
650.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
617.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
509.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
505.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
499.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
496.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
494.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
477.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
476.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
440.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
423.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
423.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
421.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
419.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
413.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
406.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
406.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
400.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
396.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
393.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
391.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
389.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
389.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
383.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
374.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
373.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
370.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
369.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
368.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
362.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
361.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
361.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
360.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
354.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
353.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
353.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
350.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
349.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
348.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
348.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
348.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
344.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
344.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
342.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
341.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
340.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
336.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
334.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
334.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
334.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
333.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
333.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
332.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
328.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
327.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
327.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
325.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
325.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
325.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
320.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
320.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
318.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
315.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
315.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
314.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
312.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
312.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
309.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
308.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
307.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
307.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
306.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
305.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
304.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
303.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
303.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
302.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
299.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
298.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
297.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
296.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
295.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
294.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
292.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
292.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
292.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
291.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
291.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
291.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
291.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
290.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
290.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
288.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
287.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
287.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
286.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
286.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
285.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
283.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
283.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
283.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
283.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
282.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
281.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
281.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
281.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
280.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
280.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
278.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
277.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
276.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
273.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
273.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
273.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
271.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
271.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
271.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
270.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
270.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
269.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
269.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
268.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
268.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
267.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
266.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
266.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
265.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
265.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
265.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
264.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
263.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
263.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
262.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
262.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
262.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
259.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
258.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
257.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
256.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
256.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
254.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
253.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
253.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
252.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
251.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
251.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
251.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
250.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
249.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
249.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
249.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
249.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
249.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
248.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
248.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
247.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
247.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
247.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
244.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
244.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
242.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
242.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
241.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
239.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
236.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
235.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
234.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
234.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
233.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
232.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
232.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
231.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
230.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
229.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
226.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
226.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
226.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
224.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
224.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
224.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
224.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
218.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
218.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
217.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
217.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
216.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
216.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
215.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
214.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
214.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
213.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
213.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
212.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
212.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
212.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
211.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
211.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
211.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
210.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
210.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
209.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
209.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
205.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
205.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
202.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
201.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
201.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
200.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
199.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
199.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
198.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
198.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
197.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
197.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
197.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
197.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
196.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
195.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
195.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
194.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
194.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
194.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
193.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
193.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
193.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
193.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
192.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
192.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
191.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
191.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
190.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
190.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
190.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
190.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
189.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
189.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
188.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
188.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
187.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
187.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
186.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
186.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
185.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
185.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
183.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
180.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
178.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
176.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
176.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
175.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
174.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
173.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
173.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
173.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
173.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
172.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
172.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
171.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
171.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
168.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
166.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
165.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
164.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
163.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
163.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
162.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
162.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
161.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
161.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
160.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
160.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
159.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
159.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
158.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
158.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
158.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
158.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
157.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
156.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
155.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
151.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
148.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
148.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
146.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
145.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
144.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
144.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
143.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
143.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
140.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
139.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
138.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
138.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
136.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
135.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
135.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
135.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
134.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
134.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
133.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
131.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
129.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
127.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
126.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
126.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
126.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
125.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
122.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
121.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
120.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
115.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
113.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
111.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
111.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
111.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
108.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
108.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
108.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
105.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
105.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
104.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
103.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
100.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
100.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
100.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
99.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
99.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
99.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
97.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
97.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
96.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
95.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
93.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
91.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
90.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
89.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
87.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
87.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
84.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
83.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
80.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
77.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
74.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
72.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
70.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
64.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
63.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
62.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
56.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
56.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
54.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
53.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
51.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
50.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
46.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
46.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
39.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM59 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
171.3
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
514.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
513.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
440.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
419.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
416.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
380.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
377.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
354.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
342.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
320.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
313.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
310.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
309.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
301.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
281.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
260.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
258.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
258.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
251.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
248.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
246.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
246.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
246.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
245.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
244.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
240.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
237.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
234.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
233.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
228.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
227.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
227.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
225.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
222.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
222.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
221.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
220.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
219.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
215.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
213.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
212.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
211.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
211.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
209.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
207.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
207.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
207.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
199.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
199.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
198.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
198.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
196.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
195.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
194.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
193.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
193.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
192.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
192.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
191.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
191.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
190.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
189.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
189.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
187.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
185.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
185.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
185.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
183.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
182.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
182.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
182.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
181.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
181.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
181.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
181.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
181.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
180.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
179.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
178.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
178.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
177.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
177.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
176.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
176.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
176.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
176.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
174.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
174.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
174.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
173.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
173.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
173.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
172.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
172.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
169.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
169.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
169.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
168.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
166.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
166.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
165.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
165.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
164.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
164.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
163.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
163.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
162.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
161.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
160.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
160.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
158.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
157.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
157.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
157.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
157.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
157.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
156.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
156.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
155.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
154.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
154.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
154.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
154.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
153.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
153.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
152.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
152.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
152.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
152.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
152.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
152.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
151.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
151.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
150.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
149.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
149.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
149.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
149.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
148.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
145.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
145.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
145.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
144.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
143.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
143.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
143.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
142.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
142.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
142.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
142.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
141.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
141.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
140.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
139.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
139.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
139.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
138.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
137.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
137.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
137.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
137.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
135.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
135.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
135.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
134.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
134.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
133.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
132.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
132.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
132.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
130.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
130.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
130.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
129.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
129.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
128.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
128.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
127.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
126.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
125.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
125.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
124.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
123.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
121.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
121.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
121.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
121.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
121.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
121.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
120.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
120.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
120.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
118.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
118.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
118.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
117.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
117.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
117.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
116.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
116.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
114.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
114.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
114.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
114.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
112.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
111.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
110.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
110.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
108.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
108.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
108.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
108.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
105.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
105.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
104.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
102.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
97.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
92.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
91.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
91.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
90.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
80.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
79.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
77.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
75.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
69.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
68.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
66.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
57.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
50.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
2.3
425
Tumor
2.0
393
Tumor
1.9
223
Tumor
1.9
493
Tumor
1.8
343
Tumor
1.8
187
Tumor
1.6
823
Tumor
1.3
413
Tumor
1.3
1025
Tumor
1.2
137
Tumor
1.1
545
Tumor
1.1
471
Tumor
1.0
385
Tumor
1.0
943
Tumor
1.0
745
Tumor
0.9
483
Tumor
0.9
135
Tumor
0.9
957
Tumor
0.7
1015
Tumor
0.7
467
Tumor
0.7
145
Tumor
0.6
883
Tumor
0.6
213
Tumor
0.5
697
Tumor
0.5
983
Tumor
0.5
533
Tumor
0.5
375
Tumor
0.4
1021
Tumor
0.4
917
Tumor
0.4
977
Tumor
0.4
353
Tumor
0.4
861
Tumor
0.4
537
Tumor
0.4
342
Normal
0.4
365
Tumor
0.4
563
Tumor
0.4
257
Tumor
0.4
713
Tumor
0.3
297
Tumor
0.3
354
Normal
0.3
978
Normal
0.3
445
Tumor
0.3
571
Tumor
0.3
412
Normal
0.3
951
Tumor
0.3
737
Tumor
0.2
452
Normal
0.2
527
Tumor
0.2
456
Normal
0.2
515
Tumor
0.2
1041
Tumor
0.2
1014
Normal
0.2
331
Tumor
0.2
755
Tumor
0.2
443
Tumor
0.2
1013
Tumor
0.2
721
Tumor
0.2
352
Normal
0.2
487
Tumor
0.2
231
Tumor
0.2
427
Tumor
0.2
358
Normal
0.2
468
Normal
0.2
695
Tumor
0.2
865
Tumor
0.2
975
Tumor
0.1
113
Tumor
0.1
127
Tumor
0.1
574
Normal
0.1
185
Tumor
0.1
267
Tumor
0.1
341
Tumor
0.1
126
Normal
0.1
984
Normal
0.1
916
Normal
0.1
464
Normal
0.1
428
Normal
0.1
617
Tumor
0.1
128
Normal
0.1
451
Tumor
0.1
466
Normal
0.1
923
Tumor
0.1
161
Tumor
0.1
327
Tumor
0.1
497
Tumor
0.1
344
Normal
0.1
112
Tumor
0.1
367
Tumor
0.1
364
Normal
0.1
535
Tumor
0.1
554
Normal
0.1
455
Tumor
0.1
125
Tumor
0.1
395
Tumor
0.1
423
Tumor
0.1
982
Normal
0.1
431
Tumor
0.1
186
Normal
0.1
421
Tumor
0.1
111
Normal
0.1
232
Normal
0.1
714
Normal
0.1
383
Tumor
0.1
424
Normal
0.1
361
Tumor
0.0
433
Tumor
0.0
663
Tumor
0.0
465
Tumor
0.0
432
Normal
0.0
312
Normal
0.0
188
Normal
0.0
981
Tumor
0.0
953
Tumor
0.0
517
Tumor
0.0
446
Normal
0.0
627
Tumor
0.0
357
Tumor
0.0
913
Tumor
0.0
436
Normal
0.0
212
Normal
0.0
426
Normal
0.0
262
Normal
0.0
922
Normal
0.0
567
Tumor
0.0
148
Normal
0.0
716
Normal
0.0
396
Normal
0.0
272
Normal
0.0
968
Normal
0.0
171
Tumor
0.0
884
Normal
0.0
484
Normal
0.0
388
Normal
0.0
224
Normal
0.0
1016
Normal
0.0
114
Normal
0.0
915
Tumor
-0.1
538
Normal
-0.1
534
Normal
-0.1
278
Normal
-0.1
162
Normal
-0.1
311
Tumor
-0.1
938
Normal
-0.1
271
Tumor
-0.1
328
Normal
-0.1
362
Normal
-0.1
277
Tumor
-0.1
124
Normal
-0.1
414
Normal
-0.1
686
Normal
-0.1
1045
Tumor
-0.1
416
Normal
-0.1
298
Normal
-0.1
141
Tumor
-0.1
422
Normal
-0.1
918
Normal
-0.1
514
Normal
-0.1
217
Tumor
-0.1
877
Tumor
-0.1
518
Normal
-0.1
528
Normal
-0.1
434
Normal
-0.1
557
Tumor
-0.1
648
Normal
-0.1
355
Tumor
-0.1
925
Tumor
-0.1
172
Normal
-0.1
258
Normal
-0.1
147
Tumor
-0.1
491
Tumor
-0.1
191
Tumor
-0.1
366
Normal
-0.1
494
Normal
-0.1
387
Tumor
-0.1
314
Normal
-0.1
368
Normal
-0.1
415
Tumor
-0.1
218
Normal
-0.1
926
Normal
-0.1
261
Tumor
-0.1
881
Tumor
-0.1
444
Normal
-0.1
813
Tumor
-0.1
123
Tumor
-0.1
481
Tumor
-0.1
615
Tumor
-0.1
937
Tumor
-0.1
222
Normal
-0.1
142
Normal
-0.1
958
Normal
-0.1
873
Tumor
-0.1
356
Normal
-0.2
195
Tumor
-0.2
526
Normal
-0.2
523
Tumor
-0.2
756
Normal
-0.2
572
Normal
-0.2
477
Tumor
-0.2
955
Tumor
-0.2
411
Tumor
-0.2
696
Normal
-0.2
482
Normal
-0.2
268
Normal
-0.2
214
Normal
-0.2
672
Normal
-0.2
777
Tumor
-0.2
857
Tumor
-0.2
671
Tumor
-0.2
463
Tumor
-0.2
722
Normal
-0.2
742
Normal
-0.2
138
Normal
-0.2
332
Normal
-0.2
664
Normal
-0.2
392
Normal
-0.2
132
Normal
-0.2
386
Normal
-0.2
863
Tumor
-0.2
785
Tumor
-0.2
635
Tumor
-0.2
564
Normal
-0.2
192
Normal
-0.2
376
Normal
-0.2
924
Normal
-0.2
461
Tumor
-0.2
474
Normal
-0.2
524
Normal
-0.2
525
Tumor
-0.2
956
Normal
-0.2
952
Normal
-0.2
914
Normal
-0.2
878
Normal
-0.2
662
Normal
-0.2
944
Normal
-0.2
618
Normal
-0.2
283
Tumor
-0.2
786
Normal
-0.2
921
Tumor
-0.2
964
Normal
-0.2
965
Tumor
-0.2
492
Normal
-0.2
498
Normal
-0.2
363
Tumor
-0.2
146
Normal
-0.3
546
Normal
-0.3
647
Tumor
-0.3
976
Normal
-0.3
666
Normal
-0.3
685
Tumor
-0.3
228
Normal
-0.3
284
Normal
-0.3
954
Normal
-0.3
136
Normal
-0.3
472
Normal
-0.3
874
Normal
-0.3
553
Tumor
-0.3
516
Normal
-0.3
568
Normal
-0.3
384
Normal
-0.3
698
Normal
-0.3
728
Normal
-0.3
131
Tumor
-0.3
1043
Tumor
-0.3
867
Tumor
-0.3
558
Normal
-0.3
715
Tumor
-0.3
435
Tumor
-0.3
963
Tumor
-0.3
852
Normal
-0.3
286
Normal
-0.3
394
Normal
-0.3
221
Tumor
-0.3
1027
Tumor
-0.3
814
Normal
-0.3
488
Normal
-0.3
911
Tumor
-0.4
824
Normal
-0.4
882
Normal
-0.4
743
Tumor
-0.4
816
Normal
-0.4
462
Normal
-0.4
778
Normal
-0.4
868
Normal
-0.4
642
Normal
-0.4
746
Normal
-0.4
636
Normal
-0.4
513
Tumor
-0.4
211
Tumor
-0.4
447
Tumor
-0.4
864
Normal
-0.4
196
Normal
-0.4
966
Normal
-0.4
817
Tumor
-0.4
738
Normal
-0.4
351
Tumor
-0.4
967
Tumor
-0.4
1031
Tumor
-0.5
536
Normal
-0.5
858
Normal
-0.5
723
Tumor
-0.5
727
Tumor
-0.5
391
Tumor
-0.5
448
Normal
-0.5
628
Normal
-0.5
744
Normal
-0.5
665
Tumor
-0.5
313
Tumor
-0.6
616
Normal
-0.6
912
Normal
-0.6
862
Normal
-0.6
818
Normal
-0.6
478
Normal
-0.6
724
Normal
-0.6
815
Tumor
-0.6
1044
Normal
-0.6
1046
Normal
-0.6
741
Tumor
-0.7
866
Normal
-0.7
1026
Normal
-0.7
1028
Normal
-0.7
227
Tumor
-0.7
1022
Normal
-0.8
851
Tumor
-0.8
285
Tumor
-0.8
661
Tumor
-0.8
1042
Normal
-0.9
641
Tumor
-0.9
473
Tumor
-1.0
1032
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.