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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSH6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
58.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
33.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSH6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
72.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.6
313
Tumor
1.6
957
Tumor
1.6
965
Tumor
1.5
923
Tumor
1.4
661
Tumor
1.4
967
Tumor
1.3
355
Tumor
1.3
161
Tumor
1.3
647
Tumor
1.3
497
Tumor
1.2
357
Tumor
1.2
413
Tumor
1.2
523
Tumor
1.1
391
Tumor
1.1
351
Tumor
1.1
743
Tumor
1.1
943
Tumor
1.1
571
Tumor
1.1
953
Tumor
1.0
865
Tumor
1.0
427
Tumor
1.0
951
Tumor
1.0
724
Normal
1.0
695
Tumor
1.0
367
Tumor
1.0
387
Tumor
0.9
125
Tumor
0.9
465
Tumor
0.9
331
Tumor
0.9
727
Tumor
0.8
983
Tumor
0.8
277
Tumor
0.8
533
Tumor
0.8
141
Tumor
0.8
467
Tumor
0.8
1031
Tumor
0.7
473
Tumor
0.7
487
Tumor
0.7
517
Tumor
0.7
385
Tumor
0.7
491
Tumor
0.7
663
Tumor
0.7
567
Tumor
0.7
463
Tumor
0.7
545
Tumor
0.7
131
Tumor
0.6
411
Tumor
0.6
363
Tumor
0.6
211
Tumor
0.6
383
Tumor
0.6
341
Tumor
0.6
1021
Tumor
0.5
535
Tumor
0.5
425
Tumor
0.5
573
Tumor
0.5
227
Tumor
0.5
171
Tumor
0.5
537
Tumor
0.5
283
Tumor
0.5
375
Tumor
0.5
112
Tumor
0.4
123
Tumor
0.4
285
Tumor
0.4
493
Tumor
0.4
665
Tumor
0.4
813
Tumor
0.4
423
Tumor
0.4
814
Normal
0.4
477
Tumor
0.4
977
Tumor
0.4
445
Tumor
0.4
431
Tumor
0.4
873
Tumor
0.4
361
Tumor
0.4
883
Tumor
0.3
697
Tumor
0.3
435
Tumor
0.3
271
Tumor
0.3
737
Tumor
0.3
921
Tumor
0.3
525
Tumor
0.3
815
Tumor
0.3
393
Tumor
0.3
527
Tumor
0.2
267
Tumor
0.2
213
Tumor
0.2
881
Tumor
0.2
671
Tumor
0.2
877
Tumor
0.2
937
Tumor
0.2
925
Tumor
0.2
127
Tumor
0.2
741
Tumor
0.1
297
Tumor
0.1
1043
Tumor
0.1
975
Tumor
0.1
257
Tumor
0.1
755
Tumor
0.1
221
Tumor
0.1
685
Tumor
0.1
443
Tumor
0.1
415
Tumor
0.1
713
Tumor
0.0
433
Tumor
0.0
185
Tumor
0.0
483
Tumor
0.0
231
Tumor
0.0
447
Tumor
-0.1
513
Tumor
-0.1
861
Tumor
-0.1
147
Tumor
-0.1
777
Tumor
-0.1
553
Tumor
-0.1
343
Tumor
-0.1
635
Tumor
-0.1
917
Tumor
-0.1
557
Tumor
-0.1
113
Tumor
-0.1
311
Tumor
-0.2
1015
Tumor
-0.2
471
Tumor
-0.2
915
Tumor
-0.2
1027
Tumor
-0.2
327
Tumor
-0.2
481
Tumor
-0.2
785
Tumor
-0.2
1045
Tumor
-0.2
455
Tumor
-0.2
314
Normal
-0.3
966
Normal
-0.3
217
Tumor
-0.3
981
Tumor
-0.3
963
Tumor
-0.3
641
Tumor
-0.3
191
Tumor
-0.3
715
Tumor
-0.3
312
Normal
-0.3
461
Tumor
-0.3
851
Tumor
-0.3
353
Tumor
-0.3
857
Tumor
-0.3
278
Normal
-0.3
615
Tumor
-0.3
617
Tumor
-0.3
187
Tumor
-0.3
365
Tumor
-0.4
261
Tumor
-0.4
451
Tumor
-0.4
137
Tumor
-0.4
867
Tumor
-0.4
955
Tumor
-0.4
332
Normal
-0.4
863
Tumor
-0.4
434
Normal
-0.4
328
Normal
-0.4
976
Normal
-0.4
648
Normal
-0.4
944
Normal
-0.4
195
Tumor
-0.4
368
Normal
-0.4
978
Normal
-0.4
444
Normal
-0.4
721
Tumor
-0.4
498
Normal
-0.4
358
Normal
-0.4
563
Tumor
-0.4
958
Normal
-0.4
384
Normal
-0.4
223
Tumor
-0.4
964
Normal
-0.4
188
Normal
-0.4
162
Normal
-0.4
126
Normal
-0.4
148
Normal
-0.4
421
Tumor
-0.4
916
Normal
-0.5
956
Normal
-0.5
662
Normal
-0.5
745
Tumor
-0.5
114
Normal
-0.5
186
Normal
-0.5
172
Normal
-0.5
354
Normal
-0.5
428
Normal
-0.5
817
Tumor
-0.5
554
Normal
-0.5
268
Normal
-0.5
884
Normal
-0.5
728
Normal
-0.5
722
Normal
-0.5
913
Tumor
-0.5
128
Normal
-0.5
416
Normal
-0.5
284
Normal
-0.5
366
Normal
-0.5
352
Normal
-0.5
924
Normal
-0.5
124
Normal
-0.5
344
Normal
-0.5
492
Normal
-0.5
426
Normal
-0.5
192
Normal
-0.5
664
Normal
-0.5
984
Normal
-0.5
744
Normal
-0.5
723
Tumor
-0.5
356
Normal
-0.5
364
Normal
-0.5
672
Normal
-0.5
666
Normal
-0.5
388
Normal
-0.5
386
Normal
-0.5
488
Normal
-0.5
478
Normal
-0.5
424
Normal
-0.5
968
Normal
-0.5
515
Tumor
-0.5
135
Tumor
-0.6
422
Normal
-0.6
914
Normal
-0.6
494
Normal
-0.6
696
Normal
-0.6
823
Tumor
-0.6
954
Normal
-0.6
298
Normal
-0.6
376
Normal
-0.6
272
Normal
-0.6
412
Normal
-0.6
516
Normal
-0.6
938
Normal
-0.6
468
Normal
-0.6
866
Normal
-0.6
738
Normal
-0.6
224
Normal
-0.6
952
Normal
-0.6
534
Normal
-0.6
911
Tumor
-0.6
686
Normal
-0.6
1041
Tumor
-0.6
262
Normal
-0.6
526
Normal
-0.6
546
Normal
-0.6
456
Normal
-0.6
714
Normal
-0.6
716
Normal
-0.6
146
Normal
-0.6
558
Normal
-0.6
258
Normal
-0.6
446
Normal
-0.6
514
Normal
-0.6
362
Normal
-0.6
212
Normal
-0.6
1016
Normal
-0.6
878
Normal
-0.6
474
Normal
-0.6
852
Normal
-0.6
464
Normal
-0.6
926
Normal
-0.6
536
Normal
-0.6
484
Normal
-0.6
572
Normal
-0.6
482
Normal
-0.7
778
Normal
-0.7
742
Normal
-0.7
746
Normal
-0.7
232
Normal
-0.7
145
Tumor
-0.7
1014
Normal
-0.7
922
Normal
-0.7
518
Normal
-0.7
528
Normal
-0.7
111
Normal
-0.7
414
Normal
-0.7
864
Normal
-0.7
568
Normal
-0.7
538
Normal
-0.7
342
Normal
-0.7
214
Normal
-0.7
138
Normal
-0.7
395
Tumor
-0.7
1046
Normal
-0.7
466
Normal
-0.7
228
Normal
-0.7
1044
Normal
-0.7
432
Normal
-0.7
1025
Tumor
-0.7
396
Normal
-0.7
818
Normal
-0.7
918
Normal
-0.7
1028
Normal
-0.7
564
Normal
-0.7
448
Normal
-0.7
132
Normal
-0.7
574
Normal
-0.7
912
Normal
-0.7
524
Normal
-0.7
858
Normal
-0.7
882
Normal
-0.7
136
Normal
-0.7
874
Normal
-0.7
698
Normal
-0.7
392
Normal
-0.7
472
Normal
-0.8
394
Normal
-0.8
868
Normal
-0.8
862
Normal
-0.8
452
Normal
-0.8
786
Normal
-0.8
1032
Normal
-0.8
436
Normal
-0.8
616
Normal
-0.8
824
Normal
-0.8
982
Normal
-0.8
816
Normal
-0.8
462
Normal
-0.8
628
Normal
-0.8
756
Normal
-0.8
218
Normal
-0.8
196
Normal
-0.8
1042
Normal
-0.8
286
Normal
-0.8
1022
Normal
-0.9
142
Normal
-0.9
627
Tumor
-0.9
1026
Normal
-0.9
642
Normal
-0.9
222
Normal
-0.9
618
Normal
-1.0
636
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
