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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THADA is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THADA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.0
391
Tumor
0.9
285
Tumor
0.9
661
Tumor
0.8
724
Normal
0.8
967
Tumor
0.8
815
Tumor
0.8
983
Tumor
0.7
123
Tumor
0.6
665
Tumor
0.6
671
Tumor
0.6
567
Tumor
0.6
497
Tumor
0.5
125
Tumor
0.5
943
Tumor
0.5
367
Tumor
0.5
425
Tumor
0.5
112
Tumor
0.5
283
Tumor
0.5
535
Tumor
0.5
463
Tumor
0.4
413
Tumor
0.4
191
Tumor
0.4
385
Tumor
0.4
192
Normal
0.4
217
Tumor
0.4
537
Tumor
0.4
127
Tumor
0.4
473
Tumor
0.4
745
Tumor
0.4
171
Tumor
0.4
635
Tumor
0.4
387
Tumor
0.4
467
Tumor
0.4
573
Tumor
0.4
1013
Tumor
0.3
446
Normal
0.3
697
Tumor
0.3
616
Normal
0.3
965
Tumor
0.3
545
Tumor
0.3
221
Tumor
0.3
685
Tumor
0.3
715
Tumor
0.3
1021
Tumor
0.3
523
Tumor
0.3
231
Tumor
0.3
663
Tumor
0.3
128
Normal
0.3
395
Tumor
0.3
113
Tumor
0.3
444
Normal
0.3
137
Tumor
0.3
951
Tumor
0.3
111
Normal
0.3
865
Tumor
0.3
393
Tumor
0.3
138
Normal
0.3
126
Normal
0.3
517
Tumor
0.2
617
Tumor
0.2
571
Tumor
0.2
147
Tumor
0.2
647
Tumor
0.2
628
Normal
0.2
213
Tumor
0.2
187
Tumor
0.2
434
Normal
0.2
388
Normal
0.2
386
Normal
0.2
877
Tumor
0.2
132
Normal
0.2
443
Tumor
0.2
223
Tumor
0.2
341
Tumor
0.2
743
Tumor
0.2
267
Tumor
0.2
1015
Tumor
0.2
427
Tumor
0.2
433
Tumor
0.2
436
Normal
0.2
146
Normal
0.2
432
Normal
0.2
917
Tumor
0.2
145
Tumor
0.2
136
Normal
0.2
672
Normal
0.2
713
Tumor
0.1
141
Tumor
0.1
114
Normal
0.1
465
Tumor
0.1
222
Normal
0.1
445
Tumor
0.1
873
Tumor
0.1
195
Tumor
0.1
124
Normal
0.1
883
Tumor
0.1
383
Tumor
0.1
357
Tumor
0.1
353
Tumor
0.1
396
Normal
0.1
261
Tumor
0.1
414
Normal
0.1
394
Normal
0.1
297
Tumor
0.1
428
Normal
0.1
861
Tumor
0.1
557
Tumor
0.1
618
Normal
0.1
451
Tumor
0.1
186
Normal
0.1
648
Normal
0.1
311
Tumor
0.1
363
Tumor
0.1
392
Normal
0.1
142
Normal
0.1
777
Tumor
0.1
641
Tumor
0.1
722
Normal
0.1
411
Tumor
0.1
666
Normal
0.1
375
Tumor
0.1
514
Normal
0.1
527
Tumor
0.1
358
Normal
0.1
493
Tumor
0.1
498
Normal
0.1
456
Normal
0.1
227
Tumor
0.1
447
Tumor
0.1
1043
Tumor
0.1
278
Normal
0.1
211
Tumor
0.1
662
Normal
0.1
331
Tumor
0.1
526
Normal
0.1
525
Tumor
0.1
366
Normal
0.0
131
Tumor
0.0
482
Normal
0.0
981
Tumor
0.0
424
Normal
0.0
911
Tumor
0.0
426
Normal
0.0
354
Normal
0.0
188
Normal
0.0
468
Normal
0.0
148
Normal
0.0
481
Tumor
0.0
314
Normal
0.0
422
Normal
0.0
913
Tumor
0.0
342
Normal
0.0
741
Tumor
0.0
185
Tumor
0.0
636
Normal
0.0
435
Tumor
0.0
642
Normal
0.0
228
Normal
0.0
172
Normal
0.0
563
Tumor
0.0
615
Tumor
0.0
737
Tumor
0.0
488
Normal
0.0
421
Tumor
0.0
818
Normal
0.0
344
Normal
0.0
814
Normal
0.0
513
Tumor
0.0
464
Normal
0.0
214
Normal
0.0
721
Tumor
0.0
368
Normal
0.0
977
Tumor
0.0
466
Normal
0.0
257
Tumor
0.0
384
Normal
0.0
361
Tumor
0.0
461
Tumor
0.0
723
Tumor
0.0
975
Tumor
0.0
756
Normal
0.0
196
Normal
0.0
627
Tumor
0.0
224
Normal
0.0
964
Normal
0.0
857
Tumor
0.0
343
Tumor
0.0
978
Normal
0.0
268
Normal
0.0
1016
Normal
0.0
423
Tumor
0.0
982
Normal
0.0
963
Tumor
0.0
574
Normal
0.0
376
Normal
0.0
1041
Tumor
0.0
471
Tumor
0.0
881
Tumor
0.0
746
Normal
0.0
477
Tumor
0.0
1031
Tumor
0.0
162
Normal
0.0
332
Normal
0.0
491
Tumor
0.0
914
Normal
-0.1
286
Normal
-0.1
487
Tumor
-0.1
738
Normal
-0.1
135
Tumor
-0.1
161
Tumor
-0.1
664
Normal
-0.1
862
Normal
-0.1
536
Normal
-0.1
478
Normal
-0.1
755
Tumor
-0.1
868
Normal
-0.1
312
Normal
-0.1
976
Normal
-0.1
1014
Normal
-0.1
786
Normal
-0.1
262
Normal
-0.1
568
Normal
-0.1
298
Normal
-0.1
813
Tumor
-0.1
686
Normal
-0.1
462
Normal
-0.1
714
Normal
-0.1
858
Normal
-0.1
474
Normal
-0.1
218
Normal
-0.1
365
Tumor
-0.1
824
Normal
-0.1
698
Normal
-0.1
524
Normal
-0.1
923
Tumor
-0.1
984
Normal
-0.1
864
Normal
-0.1
564
Normal
-0.1
352
Normal
-0.1
742
Normal
-0.1
944
Normal
-0.1
362
Normal
-0.1
1045
Tumor
-0.1
455
Tumor
-0.1
823
Tumor
-0.1
518
Normal
-0.1
727
Tumor
-0.1
1042
Normal
-0.1
716
Normal
-0.1
484
Normal
-0.1
572
Normal
-0.1
494
Normal
-0.1
851
Tumor
-0.1
258
Normal
-0.1
232
Normal
-0.1
744
Normal
-0.1
912
Normal
-0.1
884
Normal
-0.1
863
Tumor
-0.1
528
Normal
-0.1
866
Normal
-0.1
1046
Normal
-0.1
534
Normal
-0.1
785
Tumor
-0.1
431
Tumor
-0.1
874
Normal
-0.1
778
Normal
-0.1
452
Normal
-0.1
1044
Normal
-0.1
533
Tumor
-0.1
515
Tumor
-0.1
284
Normal
-0.1
696
Normal
-0.1
313
Tumor
-0.1
472
Normal
-0.1
882
Normal
-0.1
728
Normal
-0.1
516
Normal
-0.1
212
Normal
-0.1
852
Normal
-0.1
492
Normal
-0.2
925
Tumor
-0.2
448
Normal
-0.2
938
Normal
-0.2
364
Normal
-0.2
538
Normal
-0.2
937
Tumor
-0.2
416
Normal
-0.2
956
Normal
-0.2
966
Normal
-0.2
546
Normal
-0.2
483
Tumor
-0.2
558
Normal
-0.2
1025
Tumor
-0.2
328
Normal
-0.2
356
Normal
-0.2
277
Tumor
-0.2
1022
Normal
-0.2
1026
Normal
-0.2
867
Tumor
-0.2
968
Normal
-0.2
816
Normal
-0.2
878
Normal
-0.2
954
Normal
-0.2
271
Tumor
-0.2
327
Tumor
-0.2
955
Tumor
-0.2
916
Normal
-0.2
958
Normal
-0.2
957
Tumor
-0.2
918
Normal
-0.3
1032
Normal
-0.3
953
Tumor
-0.3
412
Normal
-0.3
272
Normal
-0.3
952
Normal
-0.3
554
Normal
-0.3
415
Tumor
-0.3
355
Tumor
-0.4
915
Tumor
-0.4
1028
Normal
-0.4
817
Tumor
-0.4
926
Normal
-0.4
921
Tumor
-0.4
695
Tumor
-0.4
553
Tumor
-0.4
922
Normal
-0.4
924
Normal
-0.5
1027
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
