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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATF2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
231
Samples
Sample
Description
TPM
DO48682
0 years, female, NA, stage:3, dead, 120 days
41.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.6
395
Tumor
1.4
131
Tumor
1.1
473
Tumor
1.1
537
Tumor
1.0
393
Tumor
1.0
387
Tumor
0.9
957
Tumor
0.9
965
Tumor
0.9
392
Normal
0.9
535
Tumor
0.9
386
Normal
0.8
463
Tumor
0.8
967
Tumor
0.8
394
Normal
0.8
388
Normal
0.8
497
Tumor
0.8
396
Normal
0.7
391
Tumor
0.7
983
Tumor
0.7
425
Tumor
0.6
161
Tumor
0.6
1013
Tumor
0.6
351
Tumor
0.6
963
Tumor
0.6
447
Tumor
0.5
517
Tumor
0.5
285
Tumor
0.5
953
Tumor
0.5
125
Tumor
0.5
533
Tumor
0.5
567
Tumor
0.5
413
Tumor
0.5
355
Tumor
0.5
435
Tumor
0.4
411
Tumor
0.4
431
Tumor
0.4
545
Tumor
0.4
112
Tumor
0.4
536
Normal
0.4
977
Tumor
0.4
171
Tumor
0.4
937
Tumor
0.4
877
Tumor
0.4
135
Tumor
0.4
943
Tumor
0.4
923
Tumor
0.4
873
Tumor
0.4
665
Tumor
0.4
367
Tumor
0.4
663
Tumor
0.4
815
Tumor
0.4
415
Tumor
0.4
487
Tumor
0.4
283
Tumor
0.4
127
Tumor
0.4
573
Tumor
0.4
737
Tumor
0.3
813
Tumor
0.3
823
Tumor
0.3
951
Tumor
0.3
671
Tumor
0.3
313
Tumor
0.3
881
Tumor
0.3
814
Normal
0.3
744
Normal
0.3
357
Tumor
0.3
483
Tumor
0.3
724
Normal
0.3
975
Tumor
0.3
477
Tumor
0.3
636
Normal
0.3
817
Tumor
0.3
628
Normal
0.3
615
Tumor
0.3
1045
Tumor
0.3
685
Tumor
0.2
297
Tumor
0.2
883
Tumor
0.2
493
Tumor
0.2
211
Tumor
0.2
925
Tumor
0.2
228
Normal
0.2
363
Tumor
0.2
1025
Tumor
0.2
455
Tumor
0.2
695
Tumor
0.2
647
Tumor
0.2
227
Tumor
0.2
146
Normal
0.2
311
Tumor
0.2
921
Tumor
0.2
385
Tumor
0.2
571
Tumor
0.2
911
Tumor
0.2
857
Tumor
0.2
527
Tumor
0.2
618
Normal
0.2
1021
Tumor
0.2
224
Normal
0.1
616
Normal
0.1
882
Normal
0.1
727
Tumor
0.1
715
Tumor
0.1
187
Tumor
0.1
444
Normal
0.1
976
Normal
0.1
862
Normal
0.1
445
Tumor
0.1
172
Normal
0.1
741
Tumor
0.1
1031
Tumor
0.1
492
Normal
0.1
635
Tumor
0.1
641
Tumor
0.1
498
Normal
0.1
1043
Tumor
0.1
526
Normal
0.1
514
Normal
0.1
563
Tumor
0.1
341
Tumor
0.1
523
Tumor
0.1
331
Tumor
0.1
123
Tumor
0.1
851
Tumor
0.1
672
Normal
0.1
661
Tumor
0.1
518
Normal
0.1
525
Tumor
0.1
185
Tumor
0.1
1044
Normal
0.1
617
Tumor
0.1
1046
Normal
0.1
433
Tumor
0.1
966
Normal
0.1
858
Normal
0.1
867
Tumor
0.0
421
Tumor
0.0
546
Normal
0.0
627
Tumor
0.0
722
Normal
0.0
861
Tumor
0.0
534
Normal
0.0
113
Tumor
0.0
981
Tumor
0.0
267
Tumor
0.0
471
Tumor
0.0
148
Normal
0.0
461
Tumor
0.0
984
Normal
0.0
662
Normal
0.0
1016
Normal
0.0
922
Normal
0.0
443
Tumor
0.0
465
Tumor
0.0
924
Normal
0.0
915
Tumor
0.0
261
Tumor
0.0
488
Normal
0.0
956
Normal
0.0
917
Tumor
0.0
524
Normal
0.0
863
Tumor
0.0
874
Normal
0.0
186
Normal
0.0
664
Normal
0.0
354
Normal
0.0
572
Normal
0.0
557
Tumor
0.0
1026
Normal
0.0
878
Normal
0.0
257
Tumor
0.0
968
Normal
0.0
286
Normal
0.0
427
Tumor
0.0
412
Normal
0.0
554
Normal
0.0
926
Normal
0.0
818
Normal
0.0
918
Normal
0.0
642
Normal
0.0
343
Tumor
0.0
745
Tumor
0.0
958
Normal
0.0
142
Normal
0.0
866
Normal
0.0
478
Normal
0.0
147
Tumor
0.0
723
Tumor
0.0
964
Normal
0.0
1015
Tumor
0.0
742
Normal
0.0
361
Tumor
0.0
824
Normal
0.0
558
Normal
0.0
491
Tumor
-0.1
516
Normal
-0.1
298
Normal
-0.1
816
Normal
-0.1
162
Normal
-0.1
352
Normal
-0.1
375
Tumor
-0.1
364
Normal
-0.1
481
Tumor
-0.1
384
Normal
-0.1
713
Tumor
-0.1
223
Tumor
-0.1
138
Normal
-0.1
528
Normal
-0.1
568
Normal
-0.1
778
Normal
-0.1
284
Normal
-0.1
777
Tumor
-0.1
666
Normal
-0.1
448
Normal
-0.1
574
Normal
-0.1
212
Normal
-0.1
728
Normal
-0.1
327
Tumor
-0.1
852
Normal
-0.1
648
Normal
-0.1
145
Tumor
-0.1
232
Normal
-0.1
446
Normal
-0.1
698
Normal
-0.1
344
Normal
-0.1
864
Normal
-0.1
785
Tumor
-0.1
553
Tumor
-0.1
916
Normal
-0.1
938
Normal
-0.1
515
Tumor
-0.1
982
Normal
-0.1
484
Normal
-0.1
141
Tumor
-0.1
686
Normal
-0.1
128
Normal
-0.1
328
Normal
-0.1
383
Tumor
-0.1
952
Normal
-0.1
342
Normal
-0.1
564
Normal
-0.1
756
Normal
-0.1
955
Tumor
-0.1
696
Normal
-0.1
188
Normal
-0.1
1014
Normal
-0.1
944
Normal
-0.1
714
Normal
-0.2
353
Tumor
-0.2
1041
Tumor
-0.2
954
Normal
-0.2
1022
Normal
-0.2
137
Tumor
-0.2
884
Normal
-0.2
912
Normal
-0.2
428
Normal
-0.2
356
Normal
-0.2
124
Normal
-0.2
865
Tumor
-0.2
268
Normal
-0.2
786
Normal
-0.2
358
Normal
-0.2
126
Normal
-0.2
451
Tumor
-0.2
231
Tumor
-0.2
376
Normal
-0.2
538
Normal
-0.2
697
Tumor
-0.2
494
Normal
-0.2
746
Normal
-0.2
271
Tumor
-0.2
132
Normal
-0.2
868
Normal
-0.2
913
Tumor
-0.2
456
Normal
-0.2
272
Normal
-0.2
365
Tumor
-0.2
258
Normal
-0.2
434
Normal
-0.2
416
Normal
-0.2
1028
Normal
-0.2
738
Normal
-0.2
368
Normal
-0.2
262
Normal
-0.2
978
Normal
-0.2
716
Normal
-0.2
111
Normal
-0.3
755
Tumor
-0.3
474
Normal
-0.3
467
Tumor
-0.3
472
Normal
-0.3
1032
Normal
-0.3
114
Normal
-0.3
277
Tumor
-0.3
221
Tumor
-0.3
914
Normal
-0.3
452
Normal
-0.3
436
Normal
-0.3
466
Normal
-0.3
332
Normal
-0.3
362
Normal
-0.3
432
Normal
-0.3
312
Normal
-0.3
468
Normal
-0.3
414
Normal
-0.3
366
Normal
-0.3
462
Normal
-0.4
218
Normal
-0.4
423
Tumor
-0.4
314
Normal
-0.4
482
Normal
-0.4
136
Normal
-0.4
278
Normal
-0.4
424
Normal
-0.4
1042
Normal
-0.4
217
Tumor
-0.4
426
Normal
-0.4
513
Tumor
-0.5
721
Tumor
-0.5
422
Normal
-0.5
464
Normal
-0.5
213
Tumor
-0.6
222
Normal
-0.6
1027
Tumor
-0.7
214
Normal
-0.8
191
Tumor
-0.8
195
Tumor
-0.9
192
Normal
-1.0
196
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
