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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RND3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
72.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
71.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
71.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
66.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
61.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
60.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
54.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
52.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
51.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
50.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
49.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
43.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
40.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
30.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RND3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.3
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
98.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
82.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
77.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
72.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
65.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
64.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
63.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
60.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
59.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
59.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
53.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
51.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
50.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
49.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
48.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
45.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
44.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
43.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
43.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
40.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
39.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
37.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
35.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
27.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
937
Tumor
1.2
283
Tumor
0.9
968
Normal
0.8
223
Tumor
0.7
538
Normal
0.7
344
Normal
0.7
976
Normal
0.7
456
Normal
0.7
468
Normal
0.6
188
Normal
0.6
545
Tumor
0.6
527
Tumor
0.6
966
Normal
0.6
394
Normal
0.6
455
Tumor
0.5
366
Normal
0.5
672
Normal
0.5
392
Normal
0.5
388
Normal
0.5
914
Normal
0.5
944
Normal
0.5
124
Normal
0.4
874
Normal
0.4
396
Normal
0.4
938
Normal
0.4
224
Normal
0.4
554
Normal
0.4
386
Normal
0.4
528
Normal
0.4
125
Tumor
0.4
328
Normal
0.4
448
Normal
0.4
492
Normal
0.4
975
Tumor
0.4
951
Tumor
0.4
111
Normal
0.4
172
Normal
0.4
816
Normal
0.4
956
Normal
0.4
416
Normal
0.4
533
Tumor
0.4
466
Normal
0.4
421
Tumor
0.4
514
Normal
0.4
376
Normal
0.4
126
Normal
0.4
728
Normal
0.3
162
Normal
0.3
484
Normal
0.3
524
Normal
0.3
285
Tumor
0.3
368
Normal
0.3
286
Normal
0.3
778
Normal
0.3
494
Normal
0.3
384
Normal
0.3
114
Normal
0.3
113
Tumor
0.3
721
Tumor
0.3
877
Tumor
0.3
128
Normal
0.3
553
Tumor
0.3
498
Normal
0.3
698
Normal
0.3
558
Normal
0.3
186
Normal
0.3
746
Normal
0.3
954
Normal
0.3
412
Normal
0.3
546
Normal
0.2
362
Normal
0.2
488
Normal
0.2
574
Normal
0.2
738
Normal
0.2
327
Tumor
0.2
537
Tumor
0.2
924
Normal
0.2
744
Normal
0.2
383
Tumor
0.2
868
Normal
0.2
863
Tumor
0.2
662
Normal
0.2
228
Normal
0.2
491
Tumor
0.2
534
Normal
0.2
516
Normal
0.2
422
Normal
0.2
356
Normal
0.2
564
Normal
0.2
958
Normal
0.2
364
Normal
0.2
572
Normal
0.2
526
Normal
0.2
918
Normal
0.2
536
Normal
0.2
917
Tumor
0.2
478
Normal
0.2
352
Normal
0.1
434
Normal
0.1
814
Normal
0.1
864
Normal
0.1
866
Normal
0.1
742
Normal
0.1
952
Normal
0.1
284
Normal
0.1
873
Tumor
0.1
461
Tumor
0.1
568
Normal
0.1
342
Normal
0.1
358
Normal
0.1
982
Normal
0.1
852
Normal
0.1
467
Tumor
0.1
648
Normal
0.1
882
Normal
0.1
426
Normal
0.1
671
Tumor
0.1
187
Tumor
0.1
148
Normal
0.1
1016
Normal
0.1
862
Normal
0.1
884
Normal
0.1
212
Normal
0.1
563
Tumor
0.1
497
Tumor
0.1
464
Normal
0.1
664
Normal
0.1
571
Tumor
0.1
365
Tumor
0.1
1042
Normal
0.1
666
Normal
0.1
474
Normal
0.0
452
Normal
0.0
513
Tumor
0.0
921
Tumor
0.0
1015
Tumor
0.0
361
Tumor
0.0
523
Tumor
0.0
1045
Tumor
0.0
428
Normal
0.0
185
Tumor
0.0
487
Tumor
0.0
943
Tumor
0.0
813
Tumor
0.0
351
Tumor
0.0
424
Normal
0.0
878
Normal
0.0
984
Normal
0.0
737
Tumor
0.0
483
Tumor
0.0
1044
Normal
0.0
815
Tumor
0.0
916
Normal
0.0
883
Tumor
0.0
343
Tumor
0.0
1014
Normal
0.0
756
Normal
-0.1
922
Normal
-0.1
955
Tumor
-0.1
881
Tumor
-0.1
1026
Normal
-0.1
393
Tumor
-0.1
824
Normal
-0.1
722
Normal
-0.1
112
Tumor
-0.1
913
Tumor
-0.1
567
Tumor
-0.1
686
Normal
-0.1
867
Tumor
-0.1
661
Tumor
-0.1
823
Tumor
-0.1
745
Tumor
-0.1
716
Normal
-0.1
818
Normal
-0.1
858
Normal
-0.1
723
Tumor
-0.1
482
Normal
-0.1
857
Tumor
-0.1
786
Normal
-0.1
518
Normal
-0.1
1046
Normal
-0.1
123
Tumor
-0.1
472
Normal
-0.2
953
Tumor
-0.2
332
Normal
-0.2
573
Tumor
-0.2
415
Tumor
-0.2
425
Tumor
-0.2
314
Normal
-0.2
912
Normal
-0.2
493
Tumor
-0.2
298
Normal
-0.2
515
Tumor
-0.2
755
Tumor
-0.2
1028
Normal
-0.2
663
Tumor
-0.2
983
Tumor
-0.2
817
Tumor
-0.2
211
Tumor
-0.2
391
Tumor
-0.2
915
Tumor
-0.2
964
Normal
-0.2
923
Tumor
-0.3
353
Tumor
-0.3
727
Tumor
-0.3
387
Tumor
-0.3
462
Normal
-0.3
354
Normal
-0.3
127
Tumor
-0.3
714
Normal
-0.3
525
Tumor
-0.3
785
Tumor
-0.3
355
Tumor
-0.3
696
Normal
-0.3
557
Tumor
-0.3
278
Normal
-0.3
443
Tumor
-0.3
926
Normal
-0.3
925
Tumor
-0.4
331
Tumor
-0.4
367
Tumor
-0.4
777
Tumor
-0.4
861
Tumor
-0.4
297
Tumor
-0.4
695
Tumor
-0.4
414
Normal
-0.4
911
Tumor
-0.4
713
Tumor
-0.5
375
Tumor
-0.5
451
Tumor
-0.5
312
Normal
-0.5
436
Normal
-0.5
851
Tumor
-0.5
427
Tumor
-0.5
865
Tumor
-0.5
978
Normal
-0.5
433
Tumor
-0.5
161
Tumor
-0.5
981
Tumor
-0.5
341
Tumor
-0.5
411
Tumor
-0.5
963
Tumor
-0.5
463
Tumor
-0.5
517
Tumor
-0.6
665
Tumor
-0.6
423
Tumor
-0.6
957
Tumor
-0.6
1043
Tumor
-0.6
685
Tumor
-0.6
363
Tumor
-0.6
445
Tumor
-0.6
147
Tumor
-0.6
724
Normal
-0.6
395
Tumor
-0.6
385
Tumor
-0.6
1022
Normal
-0.6
432
Normal
-0.6
444
Normal
-0.6
481
Tumor
-0.6
357
Tumor
-0.6
1021
Tumor
-0.7
413
Tumor
-0.7
447
Tumor
-0.7
715
Tumor
-0.7
471
Tumor
-0.7
446
Normal
-0.7
977
Tumor
-0.7
1013
Tumor
-0.8
697
Tumor
-0.8
1025
Tumor
-0.8
171
Tumor
-0.8
741
Tumor
-0.8
477
Tumor
-0.8
465
Tumor
-0.8
1032
Normal
-0.8
743
Tumor
-0.8
313
Tumor
-0.8
277
Tumor
-0.9
1031
Tumor
-0.9
431
Tumor
-0.9
311
Tumor
-1.0
535
Tumor
-1.1
967
Tumor
-1.1
647
Tumor
-1.1
1027
Tumor
-1.2
965
Tumor
-1.2
227
Tumor
-1.3
473
Tumor
-1.3
1041
Tumor
-1.4
435
Tumor
-1.4
231
Tumor
N/A
232
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
