We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WIPF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
68.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WIPF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
70.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.5
661
Tumor
1.1
311
Tumor
1.1
978
Normal
1.0
498
Normal
1.0
524
Normal
1.0
1032
Normal
0.9
536
Normal
0.9
434
Normal
0.9
192
Normal
0.9
966
Normal
0.9
724
Normal
0.8
1022
Normal
0.8
375
Tumor
0.8
268
Normal
0.8
262
Normal
0.7
975
Tumor
0.7
478
Normal
0.7
224
Normal
0.7
283
Tumor
0.7
963
Tumor
0.7
383
Tumor
0.7
492
Normal
0.7
721
Tumor
0.7
468
Normal
0.7
188
Normal
0.6
1044
Normal
0.6
1042
Normal
0.6
195
Tumor
0.6
516
Normal
0.6
917
Tumor
0.6
362
Normal
0.6
538
Normal
0.6
217
Tumor
0.6
857
Tumor
0.6
1031
Tumor
0.6
861
Tumor
0.6
943
Tumor
0.6
466
Normal
0.6
391
Tumor
0.6
716
Normal
0.6
444
Normal
0.6
464
Normal
0.6
1028
Normal
0.5
1016
Normal
0.5
213
Tumor
0.5
366
Normal
0.5
385
Tumor
0.5
852
Normal
0.5
984
Normal
0.5
672
Normal
0.5
272
Normal
0.5
126
Normal
0.5
628
Normal
0.5
662
Normal
0.5
954
Normal
0.5
494
Normal
0.5
386
Normal
0.5
447
Tumor
0.5
823
Tumor
0.4
388
Normal
0.4
364
Normal
0.4
384
Normal
0.4
415
Tumor
0.4
396
Normal
0.4
467
Tumor
0.4
395
Tumor
0.4
535
Tumor
0.4
778
Normal
0.4
518
Normal
0.4
1026
Normal
0.4
881
Tumor
0.4
297
Tumor
0.4
258
Normal
0.4
563
Tumor
0.4
976
Normal
0.4
914
Normal
0.4
212
Normal
0.4
574
Normal
0.4
866
Normal
0.4
525
Tumor
0.4
488
Normal
0.4
642
Normal
0.4
713
Tumor
0.4
284
Normal
0.3
756
Normal
0.3
956
Normal
0.3
686
Normal
0.3
456
Normal
0.3
666
Normal
0.3
714
Normal
0.3
868
Normal
0.3
446
Normal
0.3
312
Normal
0.3
952
Normal
0.3
874
Normal
0.3
916
Normal
0.3
786
Normal
0.3
722
Normal
0.3
223
Tumor
0.3
1014
Normal
0.3
343
Tumor
0.3
491
Tumor
0.3
124
Normal
0.3
1046
Normal
0.3
493
Tumor
0.3
958
Normal
0.3
428
Normal
0.3
938
Normal
0.3
125
Tumor
0.3
817
Tumor
0.3
232
Normal
0.2
332
Normal
0.2
187
Tumor
0.2
851
Tumor
0.2
918
Normal
0.2
421
Tumor
0.2
471
Tumor
0.2
864
Normal
0.2
858
Normal
0.2
957
Tumor
0.2
185
Tumor
0.2
814
Normal
0.2
461
Tumor
0.2
392
Normal
0.2
191
Tumor
0.2
816
Normal
0.2
474
Normal
0.2
913
Tumor
0.2
558
Normal
0.2
884
Normal
0.2
365
Tumor
0.2
818
Normal
0.2
424
Normal
0.2
696
Normal
0.2
328
Normal
0.2
671
Tumor
0.2
452
Normal
0.2
926
Normal
0.2
546
Normal
0.2
472
Normal
0.2
138
Normal
0.2
664
Normal
0.2
955
Tumor
0.2
882
Normal
0.2
617
Tumor
0.2
432
Normal
0.2
141
Tumor
0.2
862
Normal
0.2
355
Tumor
0.2
944
Normal
0.2
573
Tumor
0.2
883
Tumor
0.2
484
Normal
0.1
528
Normal
0.1
228
Normal
0.1
363
Tumor
0.1
545
Tumor
0.1
142
Normal
0.1
394
Normal
0.1
982
Normal
0.1
146
Normal
0.1
878
Normal
0.1
824
Normal
0.1
514
Normal
0.1
482
Normal
0.1
867
Tumor
0.1
744
Normal
0.1
416
Normal
0.1
728
Normal
0.1
351
Tumor
0.1
352
Normal
0.1
968
Normal
0.1
387
Tumor
0.1
698
Normal
0.1
298
Normal
0.1
412
Normal
0.1
448
Normal
0.1
425
Tumor
0.1
922
Normal
0.0
715
Tumor
0.0
368
Normal
0.0
877
Tumor
0.0
286
Normal
0.0
553
Tumor
0.0
145
Tumor
0.0
422
Normal
0.0
526
Normal
0.0
648
Normal
0.0
1013
Tumor
0.0
863
Tumor
0.0
564
Normal
0.0
534
Normal
0.0
554
Normal
0.0
462
Normal
0.0
967
Tumor
0.0
278
Normal
0.0
344
Normal
0.0
414
Normal
0.0
136
Normal
0.0
1043
Tumor
0.0
331
Tumor
0.0
354
Normal
0.0
636
Normal
0.0
314
Normal
0.0
114
Normal
0.0
218
Normal
0.0
727
Tumor
0.0
572
Normal
-0.1
964
Normal
-0.1
481
Tumor
-0.1
162
Normal
-0.1
455
Tumor
-0.1
413
Tumor
-0.1
641
Tumor
-0.1
111
Normal
-0.1
616
Normal
-0.1
214
Normal
-0.1
627
Tumor
-0.1
222
Normal
-0.1
513
Tumor
-0.1
537
Tumor
-0.1
161
Tumor
-0.1
912
Normal
-0.1
738
Normal
-0.1
436
Normal
-0.1
665
Tumor
-0.1
451
Tumor
-0.1
443
Tumor
-0.1
376
Normal
-0.1
925
Tumor
-0.1
924
Normal
-0.1
742
Normal
-0.1
426
Normal
-0.1
965
Tumor
-0.1
172
Normal
-0.1
746
Normal
-0.1
568
Normal
-0.2
148
Normal
-0.2
1015
Tumor
-0.2
356
Normal
-0.2
618
Normal
-0.2
135
Tumor
-0.2
221
Tumor
-0.2
186
Normal
-0.2
341
Tumor
-0.2
361
Tumor
-0.2
937
Tumor
-0.2
196
Normal
-0.2
353
Tumor
-0.2
723
Tumor
-0.2
785
Tumor
-0.2
815
Tumor
-0.2
433
Tumor
-0.2
171
Tumor
-0.2
567
Tumor
-0.3
865
Tumor
-0.3
423
Tumor
-0.3
367
Tumor
-0.3
137
Tumor
-0.3
147
Tumor
-0.3
1045
Tumor
-0.3
132
Normal
-0.3
663
Tumor
-0.3
342
Normal
-0.3
953
Tumor
-0.3
755
Tumor
-0.3
483
Tumor
-0.3
277
Tumor
-0.3
951
Tumor
-0.3
313
Tumor
-0.3
427
Tumor
-0.3
497
Tumor
-0.3
487
Tumor
-0.3
435
Tumor
-0.4
557
Tumor
-0.4
128
Normal
-0.4
227
Tumor
-0.4
915
Tumor
-0.4
697
Tumor
-0.4
327
Tumor
-0.4
685
Tumor
-0.4
231
Tumor
-0.4
517
Tumor
-0.4
813
Tumor
-0.4
473
Tumor
-0.4
431
Tumor
-0.4
873
Tumor
-0.4
983
Tumor
-0.4
113
Tumor
-0.5
515
Tumor
-0.5
615
Tumor
-0.5
358
Normal
-0.5
285
Tumor
-0.5
465
Tumor
-0.5
647
Tumor
-0.5
911
Tumor
-0.6
267
Tumor
-0.6
745
Tumor
-0.6
571
Tumor
-0.6
463
Tumor
-0.6
921
Tumor
-0.6
737
Tumor
-0.6
393
Tumor
-0.6
1025
Tumor
-0.6
357
Tumor
-0.6
261
Tumor
-0.6
1041
Tumor
-0.6
477
Tumor
-0.7
127
Tumor
-0.7
923
Tumor
-0.7
695
Tumor
-0.7
533
Tumor
-0.7
977
Tumor
-0.7
527
Tumor
-0.8
635
Tumor
-0.8
981
Tumor
-0.8
131
Tumor
-0.8
523
Tumor
-0.8
445
Tumor
-0.9
257
Tumor
-0.9
123
Tumor
-0.9
271
Tumor
-0.9
777
Tumor
-1.0
112
Tumor
-1.0
1021
Tumor
-1.1
743
Tumor
-1.1
741
Tumor
-1.1
411
Tumor
-1.1
1027
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
