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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SOS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SOS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
2.3
331
Tumor
1.4
724
Normal
0.7
125
Tumor
0.7
285
Tumor
0.7
817
Tumor
0.7
131
Tumor
0.7
491
Tumor
0.6
351
Tumor
0.6
665
Tumor
0.5
641
Tumor
0.5
661
Tumor
0.5
271
Tumor
0.5
671
Tumor
0.5
553
Tumor
0.5
545
Tumor
0.5
785
Tumor
0.4
815
Tumor
0.4
737
Tumor
0.4
385
Tumor
0.4
487
Tumor
0.4
1021
Tumor
0.4
965
Tumor
0.4
975
Tumor
0.4
455
Tumor
0.3
917
Tumor
0.3
635
Tumor
0.3
977
Tumor
0.3
861
Tumor
0.3
492
Normal
0.3
727
Tumor
0.3
451
Tumor
0.3
123
Tumor
0.3
283
Tumor
0.3
923
Tumor
0.3
513
Tumor
0.3
497
Tumor
0.3
517
Tumor
0.3
221
Tumor
0.3
881
Tumor
0.3
523
Tumor
0.3
447
Tumor
0.3
915
Tumor
0.3
231
Tumor
0.3
498
Normal
0.3
1025
Tumor
0.2
921
Tumor
0.2
957
Tumor
0.2
743
Tumor
0.2
367
Tumor
0.2
877
Tumor
0.2
1027
Tumor
0.2
963
Tumor
0.2
741
Tumor
0.2
473
Tumor
0.2
463
Tumor
0.2
695
Tumor
0.2
137
Tumor
0.2
642
Normal
0.2
884
Normal
0.2
925
Tumor
0.2
958
Normal
0.2
127
Tumor
0.2
666
Normal
0.2
443
Tumor
0.2
627
Tumor
0.2
755
Tumor
0.2
1042
Normal
0.2
873
Tumor
0.2
527
Tumor
0.2
171
Tumor
0.2
1043
Tumor
0.2
341
Tumor
0.2
493
Tumor
0.2
425
Tumor
0.2
332
Normal
0.2
966
Normal
0.2
213
Tumor
0.2
396
Normal
0.2
967
Tumor
0.2
536
Normal
0.1
1046
Normal
0.1
978
Normal
0.1
538
Normal
0.1
943
Tumor
0.1
916
Normal
0.1
672
Normal
0.1
211
Tumor
0.1
195
Tumor
0.1
434
Normal
0.1
1013
Tumor
0.1
185
Tumor
0.1
444
Normal
0.1
431
Tumor
0.1
394
Normal
0.1
863
Tumor
0.1
1045
Tumor
0.1
528
Normal
0.1
257
Tumor
0.1
141
Tumor
0.1
384
Normal
0.1
312
Normal
0.1
628
Normal
0.1
777
Tumor
0.1
883
Tumor
0.1
617
Tumor
0.1
481
Tumor
0.1
778
Normal
0.1
364
Normal
0.1
745
Tumor
0.1
376
Normal
0.1
428
Normal
0.1
212
Normal
0.1
515
Tumor
0.1
1044
Normal
0.1
445
Tumor
0.1
537
Tumor
0.1
976
Normal
0.1
664
Normal
0.1
126
Normal
0.1
387
Tumor
0.1
818
Normal
0.1
912
Normal
0.1
483
Tumor
0.1
715
Tumor
0.1
297
Tumor
0.1
388
Normal
0.1
467
Tumor
0.1
192
Normal
0.1
616
Normal
0.1
814
Normal
0.1
365
Tumor
0.1
685
Tumor
0.1
426
Normal
0.1
1031
Tumor
0.1
224
Normal
0.1
343
Tumor
0.1
953
Tumor
0.1
366
Normal
0.1
471
Tumor
0.1
516
Normal
0.1
456
Normal
0.1
534
Normal
0.1
554
Normal
0.1
698
Normal
0.1
882
Normal
0.1
983
Tumor
0.1
937
Tumor
0.1
618
Normal
0.1
482
Normal
0.1
383
Tumor
0.1
558
Normal
0.1
298
Normal
0.1
926
Normal
0.1
162
Normal
0.1
314
Normal
0.1
311
Tumor
0.1
448
Normal
0.1
1022
Normal
0.1
464
Normal
0.1
525
Tumor
0.0
392
Normal
0.0
488
Normal
0.0
416
Normal
0.0
386
Normal
0.0
261
Tumor
0.0
964
Normal
0.0
191
Tumor
0.0
864
Normal
0.0
573
Tumor
0.0
874
Normal
0.0
546
Normal
0.0
866
Normal
0.0
484
Normal
0.0
918
Normal
0.0
662
Normal
0.0
647
Tumor
0.0
356
Normal
0.0
414
Normal
0.0
922
Normal
0.0
218
Normal
0.0
478
Normal
0.0
423
Tumor
0.0
424
Normal
0.0
432
Normal
0.0
327
Tumor
0.0
756
Normal
0.0
524
Normal
0.0
951
Tumor
0.0
422
Normal
0.0
361
Tumor
0.0
911
Tumor
0.0
824
Normal
0.0
284
Normal
0.0
1015
Tumor
0.0
148
Normal
0.0
393
Tumor
0.0
924
Normal
0.0
494
Normal
0.0
268
Normal
0.0
468
Normal
0.0
567
Tumor
0.0
415
Tumor
0.0
114
Normal
0.0
786
Normal
0.0
956
Normal
0.0
363
Tumor
0.0
914
Normal
0.0
433
Tumor
0.0
1032
Normal
0.0
852
Normal
0.0
744
Normal
0.0
368
Normal
0.0
161
Tumor
0.0
533
Tumor
0.0
188
Normal
0.0
472
Normal
0.0
615
Tumor
0.0
395
Tumor
0.0
217
Tumor
0.0
954
Normal
0.0
328
Normal
0.0
984
Normal
0.0
697
Tumor
0.0
228
Normal
0.0
858
Normal
0.0
222
Normal
0.0
286
Normal
0.0
362
Normal
0.0
535
Tumor
0.0
944
Normal
0.0
663
Tumor
0.0
353
Tumor
0.0
981
Tumor
0.0
696
Normal
0.0
728
Normal
0.0
111
Normal
0.0
526
Normal
0.0
435
Tumor
0.0
648
Normal
0.0
514
Normal
0.0
355
Tumor
0.0
952
Normal
0.0
262
Normal
0.0
267
Tumor
0.0
955
Tumor
0.0
278
Normal
0.0
128
Normal
0.0
868
Normal
0.0
147
Tumor
0.0
813
Tumor
0.0
738
Normal
0.0
196
Normal
0.0
968
Normal
0.0
1014
Normal
0.0
982
Normal
0.0
452
Normal
0.0
465
Tumor
-0.1
186
Normal
-0.1
145
Tumor
-0.1
223
Tumor
-0.1
344
Normal
-0.1
146
Normal
-0.1
277
Tumor
-0.1
477
Tumor
-0.1
124
Normal
-0.1
716
Normal
-0.1
568
Normal
-0.1
466
Normal
-0.1
636
Normal
-0.1
723
Tumor
-0.1
272
Normal
-0.1
427
Tumor
-0.1
686
Normal
-0.1
313
Tumor
-0.1
1016
Normal
-0.1
172
Normal
-0.1
391
Tumor
-0.1
572
Normal
-0.1
563
Tumor
-0.1
357
Tumor
-0.1
113
Tumor
-0.1
721
Tumor
-0.1
816
Normal
-0.1
187
Tumor
-0.1
571
Tumor
-0.1
138
Normal
-0.1
421
Tumor
-0.1
436
Normal
-0.1
413
Tumor
-0.1
722
Normal
-0.1
446
Normal
-0.1
713
Tumor
-0.1
823
Tumor
-0.1
232
Normal
-0.1
112
Tumor
-0.1
913
Tumor
-0.1
878
Normal
-0.1
746
Normal
-0.1
564
Normal
-0.1
375
Tumor
-0.1
557
Tumor
-0.1
474
Normal
-0.1
714
Normal
-0.1
142
Normal
-0.1
862
Normal
-0.1
135
Tumor
-0.1
742
Normal
-0.1
412
Normal
-0.1
214
Normal
-0.1
1026
Normal
-0.1
354
Normal
-0.1
258
Normal
-0.1
136
Normal
-0.1
461
Tumor
-0.1
132
Normal
-0.1
462
Normal
-0.1
938
Normal
-0.1
857
Tumor
-0.1
352
Normal
-0.2
518
Normal
-0.2
1028
Normal
-0.2
1041
Tumor
-0.2
574
Normal
-0.2
342
Normal
-0.2
358
Normal
-0.2
867
Tumor
-0.3
227
Tumor
-0.3
851
Tumor
-0.4
411
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
