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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC1A4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC1A4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
66.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
341
Tumor
1.8
737
Tumor
1.6
1013
Tumor
1.6
127
Tumor
1.5
473
Tumor
1.5
965
Tumor
1.5
387
Tumor
1.4
463
Tumor
1.4
715
Tumor
1.4
497
Tumor
1.3
983
Tumor
1.3
1025
Tumor
1.2
685
Tumor
1.2
923
Tumor
1.2
883
Tumor
1.1
443
Tumor
1.1
967
Tumor
1.0
665
Tumor
0.9
313
Tumor
0.9
937
Tumor
0.9
517
Tumor
0.9
533
Tumor
0.9
745
Tumor
0.9
1041
Tumor
0.9
367
Tumor
0.8
147
Tumor
0.8
724
Normal
0.8
483
Tumor
0.8
567
Tumor
0.8
285
Tumor
0.8
727
Tumor
0.8
537
Tumor
0.8
877
Tumor
0.7
925
Tumor
0.7
113
Tumor
0.7
873
Tumor
0.7
171
Tumor
0.7
493
Tumor
0.7
865
Tumor
0.7
421
Tumor
0.7
435
Tumor
0.7
963
Tumor
0.7
1015
Tumor
0.6
161
Tumor
0.6
663
Tumor
0.6
981
Tumor
0.6
535
Tumor
0.6
355
Tumor
0.6
427
Tumor
0.5
477
Tumor
0.5
525
Tumor
0.5
445
Tumor
0.5
357
Tumor
0.5
1031
Tumor
0.5
391
Tumor
0.4
977
Tumor
0.4
411
Tumor
0.4
185
Tumor
0.4
351
Tumor
0.4
813
Tumor
0.4
123
Tumor
0.4
741
Tumor
0.4
363
Tumor
0.3
231
Tumor
0.3
467
Tumor
0.3
523
Tumor
0.3
1043
Tumor
0.3
277
Tumor
0.3
851
Tumor
0.3
331
Tumor
0.3
823
Tumor
0.3
451
Tumor
0.3
223
Tumor
0.2
283
Tumor
0.2
557
Tumor
0.2
527
Tumor
0.2
491
Tumor
0.2
481
Tumor
0.2
915
Tumor
0.1
267
Tumor
0.1
951
Tumor
0.1
671
Tumor
0.1
917
Tumor
0.1
545
Tumor
0.1
814
Normal
0.1
647
Tumor
0.1
187
Tumor
0.1
361
Tumor
0.1
641
Tumor
0.1
953
Tumor
0.1
817
Tumor
0.1
261
Tumor
0.1
966
Normal
0.1
471
Tumor
0.0
227
Tumor
0.0
921
Tumor
0.0
465
Tumor
0.0
743
Tumor
0.0
635
Tumor
0.0
195
Tumor
0.0
112
Tumor
0.0
131
Tumor
0.0
297
Tumor
0.0
1045
Tumor
0.0
213
Tumor
0.0
257
Tumor
0.0
137
Tumor
0.0
563
Tumor
0.0
723
Tumor
0.0
383
Tumor
0.0
943
Tumor
-0.1
697
Tumor
-0.1
926
Normal
-0.1
211
Tumor
-0.1
742
Normal
-0.1
395
Tumor
-0.1
857
Tumor
-0.1
978
Normal
-0.1
755
Tumor
-0.1
135
Tumor
-0.1
125
Tumor
-0.1
1044
Normal
-0.1
433
Tumor
-0.1
186
Normal
-0.1
217
Tumor
-0.1
513
Tumor
-0.1
617
Tumor
-0.1
1027
Tumor
-0.1
1021
Tumor
-0.2
145
Tumor
-0.2
536
Normal
-0.2
141
Tumor
-0.2
385
Tumor
-0.2
271
Tumor
-0.2
957
Tumor
-0.2
916
Normal
-0.2
662
Normal
-0.2
863
Tumor
-0.2
777
Tumor
-0.2
515
Tumor
-0.2
861
Tumor
-0.2
332
Normal
-0.2
286
Normal
-0.3
498
Normal
-0.3
415
Tumor
-0.3
314
Normal
-0.3
375
Tumor
-0.3
573
Tumor
-0.3
192
Normal
-0.3
661
Tumor
-0.3
188
Normal
-0.3
262
Normal
-0.3
666
Normal
-0.3
672
Normal
-0.3
191
Tumor
-0.3
114
Normal
-0.3
126
Normal
-0.3
696
Normal
-0.3
456
Normal
-0.3
922
Normal
-0.3
526
Normal
-0.3
393
Tumor
-0.3
528
Normal
-0.3
136
Normal
-0.3
911
Tumor
-0.3
311
Tumor
-0.3
534
Normal
-0.3
352
Normal
-0.3
148
Normal
-0.3
364
Normal
-0.3
111
Normal
-0.3
124
Normal
-0.3
432
Normal
-0.3
815
Tumor
-0.3
272
Normal
-0.3
446
Normal
-0.3
744
Normal
-0.3
232
Normal
-0.3
218
Normal
-0.3
785
Tumor
-0.4
268
Normal
-0.4
388
Normal
-0.4
468
Normal
-0.4
128
Normal
-0.4
728
Normal
-0.4
258
Normal
-0.4
358
Normal
-0.4
664
Normal
-0.4
447
Tumor
-0.4
278
Normal
-0.4
413
Tumor
-0.4
956
Normal
-0.4
434
Normal
-0.4
478
Normal
-0.4
514
Normal
-0.4
284
Normal
-0.4
162
Normal
-0.4
1046
Normal
-0.4
312
Normal
-0.4
228
Normal
-0.4
444
Normal
-0.4
918
Normal
-0.4
212
Normal
-0.4
196
Normal
-0.4
572
Normal
-0.4
862
Normal
-0.4
864
Normal
-0.4
538
Normal
-0.4
964
Normal
-0.4
343
Tumor
-0.5
1014
Normal
-0.5
224
Normal
-0.5
422
Normal
-0.5
524
Normal
-0.5
298
Normal
-0.5
431
Tumor
-0.5
721
Tumor
-0.5
488
Normal
-0.5
452
Normal
-0.5
472
Normal
-0.5
955
Tumor
-0.5
738
Normal
-0.5
1016
Normal
-0.5
574
Normal
-0.5
553
Tumor
-0.5
982
Normal
-0.5
384
Normal
-0.5
568
Normal
-0.5
722
Normal
-0.5
984
Normal
-0.5
392
Normal
-0.5
396
Normal
-0.5
455
Tumor
-0.5
884
Normal
-0.5
386
Normal
-0.5
342
Normal
-0.5
494
Normal
-0.5
474
Normal
-0.5
1042
Normal
-0.5
913
Tumor
-0.5
546
Normal
-0.5
394
Normal
-0.5
368
Normal
-0.5
571
Tumor
-0.6
222
Normal
-0.6
354
Normal
-0.6
695
Tumor
-0.6
482
Normal
-0.6
698
Normal
-0.6
142
Normal
-0.6
172
Normal
-0.6
824
Normal
-0.6
492
Normal
-0.6
648
Normal
-0.6
412
Normal
-0.6
462
Normal
-0.6
558
Normal
-0.6
356
Normal
-0.6
416
Normal
-0.6
448
Normal
-0.6
1026
Normal
-0.6
866
Normal
-0.6
146
Normal
-0.6
423
Tumor
-0.6
686
Normal
-0.6
376
Normal
-0.6
878
Normal
-0.6
365
Tumor
-0.6
868
Normal
-0.7
132
Normal
-0.7
924
Normal
-0.7
362
Normal
-0.7
484
Normal
-0.7
461
Tumor
-0.7
214
Normal
-0.7
976
Normal
-0.7
952
Normal
-0.7
436
Normal
-0.7
852
Normal
-0.7
746
Normal
-0.7
914
Normal
-0.7
716
Normal
-0.7
778
Normal
-0.7
968
Normal
-0.7
756
Normal
-0.7
464
Normal
-0.7
615
Tumor
-0.7
882
Normal
-0.7
327
Tumor
-0.7
975
Tumor
-0.7
938
Normal
-0.8
518
Normal
-0.8
958
Normal
-0.8
858
Normal
-0.8
221
Tumor
-0.8
344
Normal
-0.8
786
Normal
-0.8
816
Normal
-0.8
487
Tumor
-0.8
328
Normal
-0.8
944
Normal
-0.8
1032
Normal
-0.8
954
Normal
-0.8
414
Normal
-0.8
881
Tumor
-0.8
138
Normal
-0.8
713
Tumor
-0.8
912
Normal
-0.8
426
Normal
-0.9
425
Tumor
-0.9
428
Normal
-0.9
714
Normal
-0.9
516
Normal
-0.9
1028
Normal
-0.9
366
Normal
-0.9
353
Tumor
-0.9
564
Normal
-0.9
874
Normal
-0.9
818
Normal
-0.9
424
Normal
-0.9
554
Normal
-1.0
466
Normal
-1.0
867
Tumor
-1.1
1022
Normal
-1.1
642
Normal
-1.1
627
Tumor
-1.1
628
Normal
-1.1
616
Normal
-1.1
618
Normal
-1.1
636
Normal
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
