MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.3 nTPM
HPA Brain:12.0 nTPM
GTEx:4.3 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:4.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
2411 Female, age 72, unknown 16.0
2219 Male, age 76, both hemispheres 12.7
2019 Male, age 18, unknown 12.2
1830 Male, age 51, unknown 11.8
2666 Male, age 74, left hemisphere 11.4
1833 Male, age 53, unknown 11.2
1870 Female, age 42, unknown 11.2
1827 Male, age 72, unknown 11.0
2828 Female, age 72, unknown 11.0
2586 Male, age 75, left hemisphere 8.2
Dorsal raphe nucleus
nTPM: 9.9
2750 Male, age 76, both hemispheres 11.3
2016 Female, age 72, unknown 10.1
2047 Male, age 72, unknown 9.9
1828 Male, age 53, unknown 9.2
2298 Female, age 72, unknown 8.8
Inferior colliculus
nTPM: 11.2
1848 Female, age 42, unknown 11.6
2097 Female, age 72, unknown 11.6
1890 Male, age 53, unknown 11.4
2849 Male, age 72, unknown 10.3
Median raphe nucleus
nTPM: 10.9
2220 Male, age 76, midline 10.9
Periaquaductal grey, anterior
nTPM: 11.6
2502 Female, age 75, unknown 13.1
1947 Male, age 18, unknown 12.3
1795 Male, age 51, unknown 9.4
Periaquaductal grey, dorsal
nTPM: 11.2
2464 Female, age 72, unknown 14.1
1831 Male, age 72, unknown 11.1
1840 Male, age 53, unknown 10.4
2850 Male, age 76, both hemispheres 9.2
Periaquaductal grey, lateral
nTPM: 9.8
2272 Male, age 74, both hemispheres 11.1
2053 Male, age 18, unknown 10.2
2140 Male, age 76, both hemispheres 8.2
Pretectal area
nTPM: 11.3
1816 Male, age 51, unknown 13.9
2316 Male, age 76, right hemisphere 13.0
2007 Male, age 72, unknown 12.8
1944 Female, age 72, unknown 12.7
1815 Male, age 53, unknown 12.6
1817 Female, age 42, unknown 11.5
2273 Male, age 74, both hemispheres 11.5
2667 Female, age 75, unknown 10.8
2224 Female, age 72, unknown 8.9
2407 Male, age 75, both hemispheres 8.9
2825 Male, age 18, unknown 8.0
Red nucleus
nTPM: 12.0
2503 Female, age 72, unknown 14.3
1904 Male, age 53, unknown 14.0
2588 Male, age 74, left hemisphere 13.4
2785 Male, age 18, unknown 13.2
1865 Male, age 51, unknown 12.8
1821 Female, age 72, unknown 12.1
2823 Male, age 76, right hemisphere 11.9
2769 Male, age 72, unknown 11.0
2227 Male, age 72, unknown 10.8
1954 Female, age 42, unknown 10.7
2725 Female, age 75, unknown 10.5
2584 Male, age 75, left hemisphere 8.8
Substantia nigra
nTPM: 11.2
2409 Female, age 72, unknown 14.0
1889 Female, age 72, unknown 13.2
2241 Male, age 72, unknown 12.9
2583 Male, age 75, right hemisphere 11.3
1941 Male, age 53, unknown 11.2
1851 Male, age 51, unknown 10.7
2699 Male, age 18, unknown 10.3
2590 Female, age 75, unknown 10.1
2665 Male, age 74, both hemispheres 9.2
1916 Female, age 42, unknown 9.0
Superior colliculus
nTPM: 11.2
1895 Male, age 76, right hemisphere 12.8
2261 Male, age 18, unknown 12.6
2668 Female, age 75, unknown 12.6
1913 Female, age 42, unknown 12.1
2087 Female, age 72, unknown 12.0
1995 Male, age 72, unknown 11.2
2587 Male, age 74, left hemisphere 10.6
1796 Male, age 53, unknown 10.1
1839 Male, age 51, unknown 9.9
2664 Male, age 75, both hemispheres 8.4
Ventral tegmental area
nTPM: 10.5
2410 Female, age 72, unknown 12.8
2223 Female, age 72, unknown 11.0
1942 Male, age 51, unknown 10.7
2021 Male, age 53, unknown 10.0
1915 Female, age 42, unknown 9.4
2218 Male, age 76, both hemispheres 8.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.3
Samples: 139

Max nTPM: 7.4
Min nTPM: 2.1
Std nTPM: 1.0
Median nTPM: 4.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 7.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 7.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 7.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 7.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 7.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 7.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 6.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 6.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 6.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.0
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 6.5
Sample C Male 6.2
Sample D Male 9.4
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 7.4
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 7.4
Sample C Male 7.3
Sample D Male 7.1
Periaqueductal gray
nTPM: 7.1
Samples: 3

Max nTPM: 8.0
Min nTPM: 6.2
Sample B Female 8.0
Sample C Male 6.2
Sample D Male 7.0
Superior colliculi
nTPM: 6.6
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 5.7
Sample C Male 8.3
Sample D Male 6.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.9
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.5
Sample A Male 4.5
Sample B Male 4.5
Sample C Female 4.6
Sample D Female 6.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68631887 Antisense, RP_050125_01_C08, Mouse strain C57BL/6J (56 days, male) 0.1

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