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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R7 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
121.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
104.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
99.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
92.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
90.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
87.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
87.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
86.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
85.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
83.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
81.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
77.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
76.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
75.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
74.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
73.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
73.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
72.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
71.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
71.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
71.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
70.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
69.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
69.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
69.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
68.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
68.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
68.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
68.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
68.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
67.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
67.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
67.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
67.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
66.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
66.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
65.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
65.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
64.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
64.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
64.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
64.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
64.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
64.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
63.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
63.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
63.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
62.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
61.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
60.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
60.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
60.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
60.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
59.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
59.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
59.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
59.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
59.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
58.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
58.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
57.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
57.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
57.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
57.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
57.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
57.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
57.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
56.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
56.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
56.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
56.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
56.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
56.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
56.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
55.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
55.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
55.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
55.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
55.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
54.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
54.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
54.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
54.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
54.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
53.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
53.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
53.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
52.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
52.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
52.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
51.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
51.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
51.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
50.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
50.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
50.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
50.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
50.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
50.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
50.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
49.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
49.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
49.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
48.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
48.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
48.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
48.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
48.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
48.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
48.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
48.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
48.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
48.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
48.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
47.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
47.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
47.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
47.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
47.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
47.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
46.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
46.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
46.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
46.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
46.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
46.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
46.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
46.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
46.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
45.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
45.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
45.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
45.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
45.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
44.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
44.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
44.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
44.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
44.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
44.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
44.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
43.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
43.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
43.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
43.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
42.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
42.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
42.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
42.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
42.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
42.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
42.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
42.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
41.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
41.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
41.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
41.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
40.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
40.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
40.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
40.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
40.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
39.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
39.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
38.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
38.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
37.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
37.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
36.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
36.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
36.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
36.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
35.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
35.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
35.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
35.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
35.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
35.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
34.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
34.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
34.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
32.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
32.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
32.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
31.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
28.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
26.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R7 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.6
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
72.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
71.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
69.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
66.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
66.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
65.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
64.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
63.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
61.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
60.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
60.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
59.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
58.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
57.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
56.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
55.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
55.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
54.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
53.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
52.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
49.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
48.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
47.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
46.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
45.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
45.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
44.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
43.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
42.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
41.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
40.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
40.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
39.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
38.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
38.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
37.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
37.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
36.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
36.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
35.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
34.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
33.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
32.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
30.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.8
131
Tumor
0.6
425
Tumor
0.6
1027
Tumor
0.6
271
Tumor
0.6
357
Tumor
0.5
745
Tumor
0.5
327
Tumor
0.4
517
Tumor
0.4
387
Tumor
0.4
435
Tumor
0.4
615
Tumor
0.4
863
Tumor
0.4
627
Tumor
0.4
755
Tumor
0.4
695
Tumor
0.3
313
Tumor
0.3
358
Normal
0.3
963
Tumor
0.3
867
Tumor
0.3
951
Tumor
0.3
416
Normal
0.3
616
Normal
0.3
432
Normal
0.3
147
Tumor
0.3
1022
Normal
0.3
858
Normal
0.3
515
Tumor
0.3
723
Tumor
0.3
414
Normal
0.3
227
Tumor
0.3
354
Normal
0.3
462
Normal
0.3
1043
Tumor
0.3
424
Normal
0.3
742
Normal
0.3
415
Tumor
0.3
1046
Normal
0.3
714
Normal
0.3
944
Normal
0.3
436
Normal
0.3
353
Tumor
0.3
724
Normal
0.3
955
Tumor
0.3
862
Normal
0.2
482
Normal
0.2
635
Tumor
0.2
756
Normal
0.2
698
Normal
0.2
981
Tumor
0.2
746
Normal
0.2
212
Normal
0.2
426
Normal
0.2
864
Normal
0.2
925
Tumor
0.2
967
Tumor
0.2
666
Normal
0.2
478
Normal
0.2
648
Normal
0.2
431
Tumor
0.2
228
Normal
0.2
866
Normal
0.2
1013
Tumor
0.2
786
Normal
0.2
1014
Normal
0.2
642
Normal
0.2
924
Normal
0.2
422
Normal
0.2
277
Tumor
0.2
564
Normal
0.2
958
Normal
0.2
514
Normal
0.2
376
Normal
0.2
912
Normal
0.2
628
Normal
0.2
162
Normal
0.2
448
Normal
0.2
1026
Normal
0.2
516
Normal
0.2
528
Normal
0.2
472
Normal
0.2
966
Normal
0.2
298
Normal
0.2
952
Normal
0.2
741
Tumor
0.2
546
Normal
0.2
386
Normal
0.2
132
Normal
0.2
738
Normal
0.2
977
Tumor
0.2
286
Normal
0.2
722
Normal
0.2
392
Normal
0.2
868
Normal
0.2
262
Normal
0.2
778
Normal
0.2
394
Normal
0.2
884
Normal
0.2
444
Normal
0.2
664
Normal
0.2
978
Normal
0.2
685
Tumor
0.2
662
Normal
0.2
342
Normal
0.2
1045
Tumor
0.2
818
Normal
0.2
356
Normal
0.1
982
Normal
0.1
445
Tumor
0.1
558
Normal
0.1
882
Normal
0.1
232
Normal
0.1
328
Normal
0.1
465
Tumor
0.1
815
Tumor
0.1
618
Normal
0.1
1044
Normal
0.1
142
Normal
0.1
148
Normal
0.1
141
Tumor
0.1
568
Normal
0.1
466
Normal
0.1
1021
Tumor
0.1
696
Normal
0.1
968
Normal
0.1
686
Normal
0.1
456
Normal
0.1
914
Normal
0.1
113
Tumor
0.1
744
Normal
0.1
272
Normal
0.1
641
Tumor
0.1
1016
Normal
0.1
127
Tumor
0.1
192
Normal
0.1
471
Tumor
0.1
873
Tumor
0.1
481
Tumor
0.1
953
Tumor
0.1
954
Normal
0.1
461
Tumor
0.1
452
Normal
0.1
222
Normal
0.1
824
Normal
0.1
364
Normal
0.1
362
Normal
0.1
938
Normal
0.1
672
Normal
0.1
636
Normal
0.1
112
Tumor
0.1
956
Normal
0.1
138
Normal
0.1
526
Normal
0.1
852
Normal
0.1
488
Normal
0.1
468
Normal
0.1
474
Normal
0.1
186
Normal
0.1
172
Normal
0.1
777
Tumor
0.1
464
Normal
0.1
1042
Normal
0.1
214
Normal
0.1
964
Normal
0.1
284
Normal
0.1
428
Normal
0.1
716
Normal
0.1
728
Normal
0.1
268
Normal
0.1
332
Normal
0.1
554
Normal
0.1
366
Normal
0.1
218
Normal
0.1
278
Normal
0.1
196
Normal
0.1
224
Normal
0.1
352
Normal
0.1
188
Normal
0.1
451
Tumor
0.1
384
Normal
0.1
258
Normal
0.1
368
Normal
0.1
137
Tumor
0.1
312
Normal
0.1
257
Tumor
0.1
114
Normal
0.1
878
Normal
0.1
1032
Normal
0.1
111
Normal
0.1
434
Normal
0.1
737
Tumor
0.1
446
Normal
0.1
571
Tumor
0.1
412
Normal
0.1
124
Normal
0.0
363
Tumor
0.0
976
Normal
0.0
518
Normal
0.0
663
Tumor
0.0
433
Tumor
0.0
1031
Tumor
0.0
572
Normal
0.0
314
Normal
0.0
926
Normal
0.0
484
Normal
0.0
423
Tumor
0.0
128
Normal
0.0
574
Normal
0.0
816
Normal
0.0
344
Normal
0.0
136
Normal
0.0
146
Normal
0.0
411
Tumor
0.0
126
Normal
0.0
396
Normal
0.0
223
Tumor
0.0
534
Normal
0.0
665
Tumor
0.0
923
Tumor
0.0
388
Normal
0.0
567
Tumor
0.0
331
Tumor
0.0
922
Normal
0.0
1028
Normal
0.0
171
Tumor
0.0
261
Tumor
0.0
494
Normal
0.0
874
Normal
0.0
443
Tumor
0.0
918
Normal
0.0
984
Normal
0.0
391
Tumor
0.0
527
Tumor
0.0
721
Tumor
0.0
861
Tumor
0.0
455
Tumor
0.0
421
Tumor
0.0
413
Tumor
-0.1
447
Tumor
-0.1
217
Tumor
-0.1
553
Tumor
-0.1
524
Normal
-0.1
185
Tumor
-0.1
921
Tumor
-0.1
983
Tumor
-0.1
135
Tumor
-0.1
975
Tumor
-0.1
191
Tumor
-0.1
538
Normal
-0.1
523
Tumor
-0.1
267
Tumor
-0.1
221
Tumor
-0.1
487
Tumor
-0.1
361
Tumor
-0.1
355
Tumor
-0.1
563
Tumor
-0.1
483
Tumor
-0.1
813
Tumor
-0.1
367
Tumor
-0.1
145
Tumor
-0.1
916
Normal
-0.1
915
Tumor
-0.1
883
Tumor
-0.1
498
Normal
-0.1
492
Normal
-0.1
537
Tumor
-0.1
211
Tumor
-0.1
187
Tumor
-0.1
383
Tumor
-0.2
877
Tumor
-0.2
285
Tumor
-0.2
473
Tumor
-0.2
557
Tumor
-0.2
427
Tumor
-0.2
463
Tumor
-0.2
311
Tumor
-0.2
857
Tumor
-0.2
911
Tumor
-0.2
513
Tumor
-0.2
1015
Tumor
-0.2
937
Tumor
-0.2
814
Normal
-0.2
536
Normal
-0.2
617
Tumor
-0.2
823
Tumor
-0.2
491
Tumor
-0.2
661
Tumor
-0.2
881
Tumor
-0.2
865
Tumor
-0.2
477
Tumor
-0.3
1025
Tumor
-0.3
913
Tumor
-0.3
785
Tumor
-0.3
713
Tumor
-0.3
213
Tumor
-0.3
715
Tumor
-0.3
365
Tumor
-0.3
393
Tumor
-0.3
343
Tumor
-0.3
817
Tumor
-0.3
231
Tumor
-0.3
647
Tumor
-0.3
195
Tumor
-0.3
123
Tumor
-0.3
573
Tumor
-0.4
395
Tumor
-0.4
535
Tumor
-0.4
1041
Tumor
-0.4
917
Tumor
-0.4
283
Tumor
-0.4
851
Tumor
-0.4
533
Tumor
-0.4
341
Tumor
-0.4
351
Tumor
-0.4
375
Tumor
-0.4
125
Tumor
-0.4
493
Tumor
-0.4
671
Tumor
-0.5
957
Tumor
-0.5
943
Tumor
-0.5
727
Tumor
-0.5
525
Tumor
-0.5
385
Tumor
-0.5
297
Tumor
-0.6
697
Tumor
-0.6
161
Tumor
-0.6
545
Tumor
-0.6
467
Tumor
-0.7
965
Tumor
-0.8
497
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
