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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ABCB6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
84.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
75.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
72.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
70.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
62.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
60.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
53.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
52.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
38.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ABCB6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
132.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
67.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
59.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
56.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
55.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
46.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
45.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
38.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.0
227
Tumor
1.3
267
Tumor
1.2
363
Tumor
1.1
257
Tumor
1.1
911
Tumor
1.1
1041
Tumor
1.1
573
Tumor
1.0
525
Tumor
1.0
537
Tumor
0.8
391
Tumor
0.7
741
Tumor
0.7
571
Tumor
0.6
443
Tumor
0.6
877
Tumor
0.6
123
Tumor
0.6
517
Tumor
0.6
473
Tumor
0.6
915
Tumor
0.5
824
Normal
0.5
171
Tumor
0.5
616
Normal
0.5
428
Normal
0.5
481
Tumor
0.5
387
Tumor
0.5
567
Tumor
0.5
413
Tumor
0.5
721
Tumor
0.4
361
Tumor
0.4
435
Tumor
0.4
482
Normal
0.4
145
Tumor
0.4
665
Tumor
0.4
483
Tumor
0.3
356
Normal
0.3
1025
Tumor
0.3
388
Normal
0.3
823
Tumor
0.3
713
Tumor
0.3
922
Normal
0.3
362
Normal
0.3
648
Normal
0.3
1046
Normal
0.3
867
Tumor
0.3
1032
Normal
0.3
484
Normal
0.3
272
Normal
0.3
918
Normal
0.2
474
Normal
0.2
354
Normal
0.2
132
Normal
0.2
526
Normal
0.2
923
Tumor
0.2
278
Normal
0.2
951
Tumor
0.2
185
Tumor
0.2
912
Normal
0.2
415
Tumor
0.2
926
Normal
0.2
618
Normal
0.2
742
Normal
0.2
427
Tumor
0.2
1014
Normal
0.2
314
Normal
0.2
1028
Normal
0.2
1027
Tumor
0.2
396
Normal
0.2
357
Tumor
0.2
462
Normal
0.2
258
Normal
0.2
472
Normal
0.2
436
Normal
0.2
862
Normal
0.2
964
Normal
0.2
786
Normal
0.2
222
Normal
0.2
722
Normal
0.2
451
Tumor
0.2
148
Normal
0.2
137
Tumor
0.2
1042
Normal
0.1
366
Normal
0.1
976
Normal
0.1
488
Normal
0.1
568
Normal
0.1
546
Normal
0.1
426
Normal
0.1
127
Tumor
0.1
493
Tumor
0.1
494
Normal
0.1
958
Normal
0.1
728
Normal
0.1
376
Normal
0.1
161
Tumor
0.1
328
Normal
0.1
423
Tumor
0.1
298
Normal
0.1
111
Normal
0.1
553
Tumor
0.1
128
Normal
0.1
228
Normal
0.1
223
Tumor
0.1
477
Tumor
0.1
534
Normal
0.1
411
Tumor
0.1
186
Normal
0.1
368
Normal
0.1
448
Normal
0.1
572
Normal
0.1
277
Tumor
0.1
464
Normal
0.1
1026
Normal
0.1
286
Normal
0.1
424
Normal
0.1
564
Normal
0.1
352
Normal
0.1
232
Normal
0.1
884
Normal
0.1
1016
Normal
0.1
491
Tumor
0.1
873
Tumor
0.1
818
Normal
0.1
697
Tumor
0.1
124
Normal
0.1
432
Normal
0.1
913
Tumor
0.1
172
Normal
0.0
666
Normal
0.0
861
Tumor
0.0
136
Normal
0.0
196
Normal
0.0
466
Normal
0.0
815
Tumor
0.0
261
Tumor
0.0
487
Tumor
0.0
743
Tumor
0.0
953
Tumor
0.0
412
Normal
0.0
364
Normal
0.0
865
Tumor
0.0
114
Normal
0.0
422
Normal
0.0
664
Normal
0.0
297
Tumor
0.0
715
Tumor
0.0
351
Tumor
0.0
535
Tumor
0.0
162
Normal
0.0
914
Normal
0.0
696
Normal
0.0
968
Normal
0.0
187
Tumor
0.0
874
Normal
0.0
1022
Normal
0.0
342
Normal
-0.1
882
Normal
-0.1
864
Normal
-0.1
925
Tumor
-0.1
528
Normal
-0.1
514
Normal
-0.1
446
Normal
-0.1
686
Normal
-0.1
938
Normal
-0.1
983
Tumor
-0.1
394
Normal
-0.1
431
Tumor
-0.1
384
Normal
-0.1
358
Normal
-0.1
353
Tumor
-0.1
463
Tumor
-0.1
284
Normal
-0.1
283
Tumor
-0.1
312
Normal
-0.1
461
Tumor
-0.1
744
Normal
-0.1
816
Normal
-0.1
527
Tumor
-0.1
756
Normal
-0.1
558
Normal
-0.1
965
Tumor
-0.1
414
Normal
-0.1
195
Tumor
-0.1
218
Normal
-0.1
516
Normal
-0.1
944
Normal
-0.1
138
Normal
-0.1
642
Normal
-0.1
698
Normal
-0.1
954
Normal
-0.1
981
Tumor
-0.1
113
Tumor
-0.1
883
Tumor
-0.1
1031
Tumor
-0.1
628
Normal
-0.1
978
Normal
-0.1
557
Tumor
-0.2
327
Tumor
-0.2
982
Normal
-0.2
421
Tumor
-0.2
331
Tumor
-0.2
727
Tumor
-0.2
554
Normal
-0.2
868
Normal
-0.2
878
Normal
-0.2
778
Normal
-0.2
332
Normal
-0.2
685
Tumor
-0.2
191
Tumor
-0.2
392
Normal
-0.2
188
Normal
-0.2
977
Tumor
-0.2
866
Normal
-0.2
385
Tumor
-0.2
738
Normal
-0.2
126
Normal
-0.2
858
Normal
-0.2
518
Normal
-0.2
344
Normal
-0.2
956
Normal
-0.2
963
Tumor
-0.2
456
Normal
-0.2
146
Normal
-0.2
131
Tumor
-0.2
746
Normal
-0.2
262
Normal
-0.2
647
Tumor
-0.2
924
Normal
-0.2
231
Tumor
-0.2
147
Tumor
-0.2
636
Normal
-0.2
433
Tumor
-0.2
498
Normal
-0.2
755
Tumor
-0.2
671
Tumor
-0.2
142
Normal
-0.3
515
Tumor
-0.3
221
Tumor
-0.3
723
Tumor
-0.3
952
Normal
-0.3
112
Tumor
-0.3
192
Normal
-0.3
125
Tumor
-0.3
662
Normal
-0.3
716
Normal
-0.3
957
Tumor
-0.3
574
Normal
-0.3
444
Normal
-0.3
641
Tumor
-0.3
471
Tumor
-0.3
1044
Normal
-0.3
213
Tumor
-0.3
984
Normal
-0.3
672
Normal
-0.3
967
Tumor
-0.3
268
Normal
-0.3
714
Normal
-0.3
224
Normal
-0.3
536
Normal
-0.3
214
Normal
-0.3
524
Normal
-0.4
863
Tumor
-0.4
513
Tumor
-0.4
478
Normal
-0.4
355
Tumor
-0.4
141
Tumor
-0.4
468
Normal
-0.4
367
Tumor
-0.4
217
Tumor
-0.4
135
Tumor
-0.4
465
Tumor
-0.4
393
Tumor
-0.4
813
Tumor
-0.4
916
Normal
-0.4
852
Normal
-0.4
452
Normal
-0.4
881
Tumor
-0.4
416
Normal
-0.4
615
Tumor
-0.4
386
Normal
-0.4
434
Normal
-0.4
212
Normal
-0.5
627
Tumor
-0.5
814
Normal
-0.5
1021
Tumor
-0.5
523
Tumor
-0.5
975
Tumor
-0.5
538
Normal
-0.5
492
Normal
-0.5
395
Tumor
-0.5
1015
Tumor
-0.6
745
Tumor
-0.6
966
Normal
-0.6
341
Tumor
-0.6
455
Tumor
-0.6
365
Tumor
-0.6
857
Tumor
-0.6
271
Tumor
-0.6
563
Tumor
-0.6
695
Tumor
-0.6
785
Tumor
-0.6
313
Tumor
-0.6
663
Tumor
-0.6
937
Tumor
-0.6
311
Tumor
-0.7
635
Tumor
-0.7
343
Tumor
-0.7
447
Tumor
-0.7
955
Tumor
-0.7
375
Tumor
-0.8
383
Tumor
-0.8
777
Tumor
-0.8
445
Tumor
-0.8
943
Tumor
-0.8
425
Tumor
-0.8
724
Normal
-0.8
1013
Tumor
-0.8
1043
Tumor
-0.9
1045
Tumor
-0.9
737
Tumor
-0.9
497
Tumor
-0.9
661
Tumor
-1.0
917
Tumor
-1.0
285
Tumor
-1.0
851
Tumor
-1.0
545
Tumor
-1.1
921
Tumor
-1.2
467
Tumor
-1.2
211
Tumor
-1.5
617
Tumor
-1.5
817
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
