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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
23.8
nTPM
HPA Brain:
85.8
nTPM
GTEx:
23.8
nTPM
FANTOM5:
167.0
Scaled Tags Per Million
Pig:
31.9
nTPM
Mouse:
66.6
nTPM
Allen mouse:
4.8
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 41.7
2828
Female, age 72, unknown
78.1
1830
Male, age 51, unknown
48.5
2586
Male, age 75, left hemisphere
48.0
2666
Male, age 74, left hemisphere
44.3
1833
Male, age 53, unknown
42.9
1870
Female, age 42, unknown
38.6
1827
Male, age 72, unknown
36.9
2019
Male, age 18, unknown
31.3
2411
Female, age 72, unknown
24.7
2219
Male, age 76, both hemispheres
24.1
Dorsal raphe nucleus nTPM: 48.2
2016
Female, age 72, unknown
62.7
2750
Male, age 76, both hemispheres
48.4
1828
Male, age 53, unknown
48.2
2298
Female, age 72, unknown
43.4
2047
Male, age 72, unknown
38.6
Inferior colliculus nTPM: 43.4
2849
Male, age 72, unknown
52.5
1890
Male, age 53, unknown
45.8
1848
Female, age 42, unknown
44.4
2097
Female, age 72, unknown
30.9
Median raphe nucleus nTPM: 57.3
2220
Male, age 76, midline
57.3
Periaquaductal grey, anterior nTPM: 77.4
1795
Male, age 51, unknown
116.4
2502
Female, age 75, unknown
78.8
1947
Male, age 18, unknown
37.0
Periaquaductal grey, dorsal nTPM: 64.9
1831
Male, age 72, unknown
86.3
1840
Male, age 53, unknown
68.0
2850
Male, age 76, both hemispheres
67.2
2464
Female, age 72, unknown
38.0
Periaquaductal grey, lateral nTPM: 85.8
2053
Male, age 18, unknown
109.5
2140
Male, age 76, both hemispheres
90.4
2272
Male, age 74, both hemispheres
57.5
Pretectal area nTPM: 55.4
2407
Male, age 75, both hemispheres
78.0
2273
Male, age 74, both hemispheres
76.9
2825
Male, age 18, unknown
76.6
2316
Male, age 76, right hemisphere
70.7
2667
Female, age 75, unknown
69.9
2224
Female, age 72, unknown
55.7
1815
Male, age 53, unknown
49.2
1944
Female, age 72, unknown
41.4
1817
Female, age 42, unknown
35.5
1816
Male, age 51, unknown
30.6
2007
Male, age 72, unknown
25.0
Red nucleus nTPM: 38.9
2584
Male, age 75, left hemisphere
63.0
2725
Female, age 75, unknown
43.4
2227
Male, age 72, unknown
42.8
2769
Male, age 72, unknown
42.3
2823
Male, age 76, right hemisphere
40.6
2785
Male, age 18, unknown
38.9
2588
Male, age 74, left hemisphere
38.0
1865
Male, age 51, unknown
36.9
1954
Female, age 42, unknown
36.9
1821
Female, age 72, unknown
28.9
1904
Male, age 53, unknown
28.4
2503
Female, age 72, unknown
26.5
Substantia nigra nTPM: 38.3
2583
Male, age 75, right hemisphere
68.4
2699
Male, age 18, unknown
61.8
2665
Male, age 74, both hemispheres
51.6
1851
Male, age 51, unknown
37.4
2590
Female, age 75, unknown
34.7
1941
Male, age 53, unknown
29.3
2409
Female, age 72, unknown
28.1
1889
Female, age 72, unknown
26.4
1916
Female, age 42, unknown
25.0
2241
Male, age 72, unknown
20.4
Superior colliculus nTPM: 63.8
1995
Male, age 72, unknown
122.2
1913
Female, age 42, unknown
121.0
2664
Male, age 75, both hemispheres
85.1
2087
Female, age 72, unknown
64.1
2587
Male, age 74, left hemisphere
51.9
1839
Male, age 51, unknown
50.0
1796
Male, age 53, unknown
46.4
2261
Male, age 18, unknown
38.3
2668
Female, age 75, unknown
33.0
1895
Male, age 76, right hemisphere
26.2
Ventral tegmental area nTPM: 59.9
2223
Female, age 72, unknown
105.9
2021
Male, age 53, unknown
85.9
1915
Female, age 42, unknown
54.6
1942
Male, age 51, unknown
48.5
2218
Male, age 76, both hemispheres
40.5
2410
Female, age 72, unknown
23.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 23.8
Samples: 139
Max nTPM: 160.6
Min nTPM: 3.9
Std nTPM: 17.9
Median nTPM: 19.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
160.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
71.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
67.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
66.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
60.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
60.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
59.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
51.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
50.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
49.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
47.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
47.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
43.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
41.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
41.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
41.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
41.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
39.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
39.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
38.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
38.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
35.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
35.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
33.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
33.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
33.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
32.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
31.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
31.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
30.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
30.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
29.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
29.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
29.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
28.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
28.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
28.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
28.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
28.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
27.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
27.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
27.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
26.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
26.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
25.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
25.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
24.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
24.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
24.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
23.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
23.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
23.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
23.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
23.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
22.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
22.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
22.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
21.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
21.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
21.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
21.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
21.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
20.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
20.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
20.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
19.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
19.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
19.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
19.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
19.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
18.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
18.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
18.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
18.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
18.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
17.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
17.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
17.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
17.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
17.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
17.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
17.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
16.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
16.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
16.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
16.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
16.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
15.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
15.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
15.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
15.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
15.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
14.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
14.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
14.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
14.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
14.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
14.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
13.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
13.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
13.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
13.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
13.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
12.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
12.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
12.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
12.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
12.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
12.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
11.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
11.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
11.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
11.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
11.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
11.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
11.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
10.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
10.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
10.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
10.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
10.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
9.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
9.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
9.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
9.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
9.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
8.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
8.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
8.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
8.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
8.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
8.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
8.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
8.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
7.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
7.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
6.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 66.6
Samples: 4
Max nTPM: 69.8
Min nTPM: 63.7
Sample A
Male
69.8
Sample B
Male
66.9
Sample C
Female
66.1
Sample D
Female
63.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.