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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
566.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
495.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
243.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
229.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
226.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
223.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
207.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
202.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
182.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
177.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
170.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
163.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
154.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
147.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
144.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
138.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
135.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
134.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
134.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
121.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
113.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
105.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
105.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
102.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
101.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
99.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
95.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
95.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
90.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
90.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
89.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
88.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
88.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
83.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
83.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
79.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
79.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
74.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
74.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
73.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
73.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
72.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
72.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
71.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
70.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
70.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
69.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
69.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
68.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
66.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
66.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
66.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
65.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
64.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
63.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
63.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
63.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
63.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
62.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
62.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
62.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
61.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
60.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
60.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
59.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
58.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
58.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
55.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
55.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
55.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
54.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
53.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
53.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
52.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
51.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
50.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
49.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
48.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
47.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
47.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
45.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
45.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
44.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
41.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
40.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
36.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
32.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
80.7
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
562.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
506.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
464.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
392.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
390.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
363.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
305.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
287.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
268.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
225.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
221.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
216.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
207.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
200.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
198.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
190.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
190.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
183.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
180.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
175.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
173.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
166.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
165.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
160.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
150.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
149.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
148.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
143.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
139.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
138.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
136.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
135.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
125.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
124.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
122.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
121.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
121.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
120.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
117.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
115.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
115.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
113.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
110.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
110.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
109.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
109.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
104.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
103.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
100.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
100.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
99.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
99.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
98.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
98.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
98.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
97.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
96.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
95.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
94.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
93.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
93.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
93.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
93.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
91.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
91.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
90.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
89.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
88.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
88.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
87.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
85.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
84.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
84.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
83.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
82.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
77.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
77.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
77.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
77.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
77.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
76.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
76.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
76.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
74.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
73.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
72.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
71.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
71.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
70.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
69.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
69.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
68.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
66.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
66.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
66.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
65.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
65.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
64.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
64.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
64.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
64.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
63.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
62.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
62.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
60.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
60.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
60.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
60.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
59.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
59.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
59.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
58.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
58.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
58.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
58.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
58.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
57.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
57.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
56.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
56.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
56.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
56.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
56.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
55.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
55.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
55.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
55.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
54.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
52.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
52.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
52.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
52.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
51.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
50.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
50.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
50.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
50.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
49.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
49.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
49.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
49.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
49.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
48.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
47.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
47.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
47.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
47.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
47.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
46.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
44.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
43.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
42.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
41.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
40.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
40.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
40.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
39.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
38.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
37.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
37.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
35.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
28.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
1.8
131
Tumor
1.7
113
Tumor
1.7
1031
Tumor
1.7
661
Tumor
1.6
434
Normal
1.4
262
Normal
1.4
1043
Tumor
1.3
966
Normal
1.3
978
Normal
1.2
213
Tumor
1.1
385
Tumor
1.1
861
Tumor
1.0
535
Tumor
1.0
211
Tumor
1.0
188
Normal
1.0
383
Tumor
1.0
955
Tumor
0.9
914
Normal
0.9
1015
Tumor
0.9
815
Tumor
0.8
451
Tumor
0.8
755
Tumor
0.8
956
Normal
0.7
416
Normal
0.7
297
Tumor
0.7
917
Tumor
0.6
524
Normal
0.6
721
Tumor
0.6
814
Normal
0.6
447
Tumor
0.6
573
Tumor
0.6
327
Tumor
0.5
283
Tumor
0.5
126
Normal
0.5
745
Tumor
0.5
362
Normal
0.4
536
Normal
0.4
393
Tumor
0.4
432
Normal
0.4
386
Normal
0.4
492
Normal
0.4
343
Tumor
0.4
915
Tumor
0.3
628
Normal
0.3
187
Tumor
0.3
468
Normal
0.3
311
Tumor
0.3
463
Tumor
0.3
366
Normal
0.3
415
Tumor
0.3
1044
Normal
0.3
137
Tumor
0.3
865
Tumor
0.3
284
Normal
0.3
467
Tumor
0.2
617
Tumor
0.2
916
Normal
0.2
975
Tumor
0.2
823
Tumor
0.2
455
Tumor
0.2
937
Tumor
0.2
268
Normal
0.2
963
Tumor
0.2
857
Tumor
0.2
272
Normal
0.2
925
Tumor
0.2
141
Tumor
0.2
135
Tumor
0.2
214
Normal
0.2
421
Tumor
0.2
224
Normal
0.2
258
Normal
0.2
557
Tumor
0.1
1045
Tumor
0.1
662
Normal
0.1
452
Normal
0.1
384
Normal
0.1
127
Tumor
0.1
358
Normal
0.1
686
Normal
0.1
977
Tumor
0.1
212
Normal
0.1
448
Normal
0.1
217
Tumor
0.1
537
Tumor
0.1
344
Normal
0.1
443
Tumor
0.1
114
Normal
0.1
514
Normal
0.1
433
Tumor
0.1
456
Normal
0.1
391
Tumor
0.1
817
Tumor
0.1
341
Tumor
0.1
257
Tumor
0.0
446
Normal
0.0
533
Tumor
0.0
863
Tumor
0.0
516
Normal
0.0
138
Normal
0.0
422
Normal
0.0
363
Tumor
0.0
881
Tumor
0.0
487
Tumor
0.0
261
Tumor
0.0
867
Tumor
0.0
666
Normal
0.0
498
Normal
0.0
195
Tumor
0.0
737
Tumor
0.0
558
Normal
0.0
387
Tumor
0.0
922
Normal
0.0
367
Tumor
0.0
494
Normal
0.0
146
Normal
0.0
136
Normal
0.0
191
Tumor
0.0
852
Normal
0.0
396
Normal
0.0
858
Normal
0.0
515
Tumor
0.0
353
Tumor
0.0
185
Tumor
-0.1
926
Normal
-0.1
873
Tumor
-0.1
663
Tumor
-0.1
1042
Normal
-0.1
471
Tumor
-0.1
954
Normal
-0.1
982
Normal
-0.1
228
Normal
-0.1
851
Tumor
-0.1
528
Normal
-0.1
1025
Tumor
-0.1
223
Tumor
-0.1
375
Tumor
-0.1
478
Normal
-0.1
493
Tumor
-0.1
964
Normal
-0.1
142
Normal
-0.1
527
Tumor
-0.1
1028
Normal
-0.1
716
Normal
-0.1
918
Normal
-0.1
286
Normal
-0.1
444
Normal
-0.1
352
Normal
-0.1
111
Normal
-0.1
574
Normal
-0.1
517
Tumor
-0.1
413
Tumor
-0.1
376
Normal
-0.1
491
Tumor
-0.1
125
Tumor
-0.2
983
Tumor
-0.2
1046
Normal
-0.2
128
Normal
-0.2
647
Tumor
-0.2
145
Tumor
-0.2
952
Normal
-0.2
554
Normal
-0.2
147
Tumor
-0.2
196
Normal
-0.2
414
Normal
-0.2
232
Normal
-0.2
1016
Normal
-0.2
357
Tumor
-0.2
943
Tumor
-0.2
813
Tumor
-0.2
913
Tumor
-0.2
953
Tumor
-0.2
388
Normal
-0.2
192
Normal
-0.2
874
Normal
-0.2
314
Normal
-0.2
571
Tumor
-0.2
161
Tumor
-0.2
312
Normal
-0.2
364
Normal
-0.2
864
Normal
-0.2
464
Normal
-0.2
132
Normal
-0.2
221
Tumor
-0.2
738
Normal
-0.2
664
Normal
-0.2
425
Tumor
-0.3
627
Tumor
-0.3
967
Tumor
-0.3
951
Tumor
-0.3
862
Normal
-0.3
756
Normal
-0.3
538
Normal
-0.3
777
Tumor
-0.3
227
Tumor
-0.3
938
Normal
-0.3
392
Normal
-0.3
368
Normal
-0.3
461
Tumor
-0.3
218
Normal
-0.3
124
Normal
-0.3
518
Normal
-0.3
685
Tumor
-0.3
172
Normal
-0.3
728
Normal
-0.3
277
Tumor
-0.3
563
Tumor
-0.3
545
Tumor
-0.3
412
Normal
-0.3
331
Tumor
-0.3
332
Normal
-0.3
355
Tumor
-0.3
1026
Normal
-0.3
976
Normal
-0.3
431
Tumor
-0.3
553
Tumor
-0.3
958
Normal
-0.3
424
Normal
-0.3
354
Normal
-0.3
665
Tumor
-0.3
816
Normal
-0.3
267
Tumor
-0.4
696
Normal
-0.4
698
Normal
-0.4
271
Tumor
-0.4
466
Normal
-0.4
222
Normal
-0.4
523
Tumor
-0.4
722
Normal
-0.4
497
Tumor
-0.4
778
Normal
-0.4
1027
Tumor
-0.4
1022
Normal
-0.4
361
Tumor
-0.4
1014
Normal
-0.4
428
Normal
-0.4
112
Tumor
-0.4
648
Normal
-0.4
278
Normal
-0.4
884
Normal
-0.4
723
Tumor
-0.4
477
Tumor
-0.4
365
Tumor
-0.4
981
Tumor
-0.4
394
Normal
-0.4
968
Normal
-0.4
1032
Normal
-0.4
743
Tumor
-0.4
672
Normal
-0.4
924
Normal
-0.4
923
Tumor
-0.4
1021
Tumor
-0.4
534
Normal
-0.4
564
Normal
-0.4
984
Normal
-0.4
921
Tumor
-0.4
727
Tumor
-0.4
742
Normal
-0.4
231
Tumor
-0.4
474
Normal
-0.4
866
Normal
-0.4
786
Normal
-0.4
635
Tumor
-0.5
356
Normal
-0.5
328
Normal
-0.5
671
Tumor
-0.5
912
Normal
-0.5
162
Normal
-0.5
488
Normal
-0.5
944
Normal
-0.5
186
Normal
-0.5
1013
Tumor
-0.5
568
Normal
-0.5
615
Tumor
-0.5
642
Normal
-0.5
546
Normal
-0.5
868
Normal
-0.5
636
Normal
-0.5
526
Normal
-0.5
525
Tumor
-0.5
285
Tumor
-0.5
818
Normal
-0.5
298
Normal
-0.5
426
Normal
-0.5
148
Normal
-0.5
883
Tumor
-0.5
445
Tumor
-0.6
641
Tumor
-0.6
572
Normal
-0.6
713
Tumor
-0.6
882
Normal
-0.6
436
Normal
-0.6
567
Tumor
-0.6
616
Normal
-0.6
695
Tumor
-0.6
785
Tumor
-0.6
423
Tumor
-0.6
395
Tumor
-0.6
351
Tumor
-0.6
714
Normal
-0.6
824
Normal
-0.6
313
Tumor
-0.6
746
Normal
-0.6
342
Normal
-0.6
697
Tumor
-0.6
957
Tumor
-0.6
741
Tumor
-0.6
483
Tumor
-0.6
171
Tumor
-0.6
618
Normal
-0.7
427
Tumor
-0.7
1041
Tumor
-0.7
465
Tumor
-0.7
462
Normal
-0.7
435
Tumor
-0.7
965
Tumor
-0.7
715
Tumor
-0.7
878
Normal
-0.7
482
Normal
-0.7
481
Tumor
-0.7
472
Normal
-0.7
123
Tumor
-0.8
473
Tumor
-0.8
484
Normal
-0.8
744
Normal
-0.8
513
Tumor
-0.9
411
Tumor
-0.9
877
Tumor
-0.9
911
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
