MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:62.5 nTPM
GTEx:24.3 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:9.9 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.3
2019 Male, age 18, unknown 64.7
2828 Female, age 72, unknown 61.3
1827 Male, age 72, unknown 59.2
1870 Female, age 42, unknown 58.8
2666 Male, age 74, left hemisphere 56.4
2411 Female, age 72, unknown 56.3
1830 Male, age 51, unknown 55.7
1833 Male, age 53, unknown 54.6
2586 Male, age 75, left hemisphere 52.8
2219 Male, age 76, both hemispheres 43.0
Dorsal raphe nucleus
nTPM: 59.9
2298 Female, age 72, unknown 65.1
2016 Female, age 72, unknown 63.9
2047 Male, age 72, unknown 57.7
1828 Male, age 53, unknown 56.6
2750 Male, age 76, both hemispheres 56.1
Inferior colliculus
nTPM: 59.2
2097 Female, age 72, unknown 66.6
1890 Male, age 53, unknown 62.0
1848 Female, age 42, unknown 57.7
2849 Male, age 72, unknown 50.5
Median raphe nucleus
nTPM: 48.4
2220 Male, age 76, midline 48.4
Periaquaductal grey, anterior
nTPM: 57.6
2502 Female, age 75, unknown 64.4
1947 Male, age 18, unknown 58.1
1795 Male, age 51, unknown 50.3
Periaquaductal grey, dorsal
nTPM: 55.4
1840 Male, age 53, unknown 58.7
1831 Male, age 72, unknown 58.2
2464 Female, age 72, unknown 56.8
2850 Male, age 76, both hemispheres 48.1
Periaquaductal grey, lateral
nTPM: 53.2
2272 Male, age 74, both hemispheres 54.8
2053 Male, age 18, unknown 54.1
2140 Male, age 76, both hemispheres 50.8
Pretectal area
nTPM: 60.2
1815 Male, age 53, unknown 70.4
1816 Male, age 51, unknown 65.2
1817 Female, age 42, unknown 65.0
2667 Female, age 75, unknown 64.5
2007 Male, age 72, unknown 64.1
1944 Female, age 72, unknown 60.8
2273 Male, age 74, both hemispheres 60.2
2224 Female, age 72, unknown 55.9
2316 Male, age 76, right hemisphere 55.7
2825 Male, age 18, unknown 51.3
2407 Male, age 75, both hemispheres 49.2
Red nucleus
nTPM: 59.4
1821 Female, age 72, unknown 74.2
1954 Female, age 42, unknown 64.0
2503 Female, age 72, unknown 63.6
2823 Male, age 76, right hemisphere 63.4
1865 Male, age 51, unknown 62.9
1904 Male, age 53, unknown 61.6
2785 Male, age 18, unknown 58.9
2227 Male, age 72, unknown 57.5
2769 Male, age 72, unknown 55.1
2584 Male, age 75, left hemisphere 51.8
2725 Female, age 75, unknown 51.1
2588 Male, age 74, left hemisphere 48.4
Substantia nigra
nTPM: 62.5
2241 Male, age 72, unknown 68.5
1916 Female, age 42, unknown 67.3
1851 Male, age 51, unknown 66.4
1889 Female, age 72, unknown 65.5
1941 Male, age 53, unknown 63.6
2699 Male, age 18, unknown 61.9
2409 Female, age 72, unknown 61.1
2590 Female, age 75, unknown 59.0
2583 Male, age 75, right hemisphere 56.5
2665 Male, age 74, both hemispheres 55.2
Superior colliculus
nTPM: 58.6
1895 Male, age 76, right hemisphere 64.6
2587 Male, age 74, left hemisphere 62.5
1913 Female, age 42, unknown 59.6
2087 Female, age 72, unknown 59.4
1995 Male, age 72, unknown 59.3
2668 Female, age 75, unknown 59.0
2261 Male, age 18, unknown 57.8
2664 Male, age 75, both hemispheres 56.2
1796 Male, age 53, unknown 54.0
1839 Male, age 51, unknown 53.4
Ventral tegmental area
nTPM: 55.5
2410 Female, age 72, unknown 65.2
1915 Female, age 42, unknown 62.2
1942 Male, age 51, unknown 56.0
2218 Male, age 76, both hemispheres 52.1
2223 Female, age 72, unknown 51.5
2021 Male, age 53, unknown 46.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 139

Max nTPM: 38.5
Min nTPM: 13.4
Std nTPM: 5.7
Median nTPM: 23.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 38.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 37.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 36.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 36.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 36.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 36.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 35.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 35.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 34.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.7
FF:10158-103A5 76 years, female 97.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.4
Samples: 4

Max nTPM: 15.6
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 13.7
Sample C Male 15.1
Sample D Male 15.6
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 16.1
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 16.1
Sample C Male 13.7
Sample D Male 15.6
Periaqueductal gray
nTPM: 14.1
Samples: 3

Max nTPM: 15.2
Min nTPM: 13.0
Sample B Female 15.2
Sample C Male 13.0
Sample D Male 14.2
Superior colliculi
nTPM: 12.3
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.7
Sample A Female 11.6
Sample B Female 10.7
Sample C Male 13.5
Sample D Male 13.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 10.2
Min nTPM: 9.5
Sample A Male 9.6
Sample B Male 9.5
Sample C Female 10.1
Sample D Female 10.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68845747 Antisense, RP_050224_02_D10, Mouse strain C57BL/6J (56 days, male) 1.4
71283662 Antisense, RP_050825_01_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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