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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLE4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
50.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLE4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.4
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
108.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
100.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
95.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
94.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
85.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
77.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
70.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
69.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
66.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
61.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
59.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
59.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
58.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
57.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
56.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
56.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
49.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
48.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
47.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
46.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
44.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
41.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
40.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
39.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
32.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
31.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.9
463
Tumor
1.9
1013
Tumor
1.5
965
Tumor
1.5
737
Tumor
1.4
661
Tumor
1.4
695
Tumor
1.3
957
Tumor
1.3
313
Tumor
1.2
425
Tumor
1.2
983
Tumor
1.2
923
Tumor
1.1
967
Tumor
1.0
351
Tumor
1.0
285
Tumor
1.0
355
Tumor
0.9
724
Normal
0.9
573
Tumor
0.9
815
Tumor
0.8
465
Tumor
0.8
545
Tumor
0.8
537
Tumor
0.8
413
Tumor
0.8
411
Tumor
0.8
227
Tumor
0.8
727
Tumor
0.7
357
Tumor
0.7
743
Tumor
0.7
125
Tumor
0.7
283
Tumor
0.7
375
Tumor
0.7
567
Tumor
0.7
527
Tumor
0.7
865
Tumor
0.7
427
Tumor
0.7
343
Tumor
0.7
467
Tumor
0.6
267
Tumor
0.6
953
Tumor
0.6
535
Tumor
0.6
367
Tumor
0.6
493
Tumor
0.5
131
Tumor
0.5
277
Tumor
0.5
814
Normal
0.5
161
Tumor
0.5
141
Tumor
0.4
943
Tumor
0.4
391
Tumor
0.4
741
Tumor
0.4
423
Tumor
0.3
213
Tumor
0.3
487
Tumor
0.3
257
Tumor
0.3
385
Tumor
0.3
365
Tumor
0.3
387
Tumor
0.3
723
Tumor
0.3
211
Tumor
0.3
461
Tumor
0.2
533
Tumor
0.2
474
Normal
0.2
977
Tumor
0.2
272
Normal
0.2
571
Tumor
0.2
472
Normal
0.2
433
Tumor
0.2
473
Tumor
0.2
817
Tumor
0.2
745
Tumor
0.2
951
Tumor
0.2
491
Tumor
0.2
188
Normal
0.2
268
Normal
0.1
482
Normal
0.1
978
Normal
0.1
187
Tumor
0.1
127
Tumor
0.1
445
Tumor
0.1
627
Tumor
0.1
976
Normal
0.1
523
Tumor
0.1
777
Tumor
0.1
137
Tumor
0.1
975
Tumor
0.1
481
Tumor
0.1
341
Tumor
0.1
823
Tumor
0.1
124
Normal
0.1
146
Normal
0.1
112
Tumor
0.0
462
Normal
0.0
478
Normal
0.0
331
Tumor
0.0
447
Tumor
0.0
262
Normal
0.0
813
Tumor
0.0
968
Normal
0.0
755
Tumor
0.0
297
Tumor
0.0
113
Tumor
0.0
298
Normal
0.0
145
Tumor
0.0
663
Tumor
0.0
966
Normal
0.0
261
Tumor
0.0
186
Normal
0.0
114
Normal
0.0
195
Tumor
0.0
172
Normal
0.0
1027
Tumor
0.0
223
Tumor
0.0
123
Tumor
0.0
148
Normal
-0.1
917
Tumor
-0.1
311
Tumor
-0.1
138
Normal
-0.1
553
Tumor
-0.1
477
Tumor
-0.1
431
Tumor
-0.1
615
Tumor
-0.1
128
Normal
-0.1
958
Normal
-0.1
142
Normal
-0.1
126
Normal
-0.1
984
Normal
-0.1
171
Tumor
-0.1
185
Tumor
-0.1
286
Normal
-0.1
344
Normal
-0.1
1031
Tumor
-0.1
191
Tumor
-0.1
212
Normal
-0.1
135
Tumor
-0.1
785
Tumor
-0.1
383
Tumor
-0.1
937
Tumor
-0.1
358
Normal
-0.1
271
Tumor
-0.1
111
Normal
-0.1
952
Normal
-0.1
224
Normal
-0.1
517
Tumor
-0.1
278
Normal
-0.1
352
Normal
-0.1
554
Normal
-0.1
162
Normal
-0.2
534
Normal
-0.2
332
Normal
-0.2
696
Normal
-0.2
851
Tumor
-0.2
916
Normal
-0.2
393
Tumor
-0.2
232
Normal
-0.2
963
Tumor
-0.2
1015
Tumor
-0.2
364
Normal
-0.2
284
Normal
-0.2
721
Tumor
-0.2
228
Normal
-0.2
728
Normal
-0.2
563
Tumor
-0.2
361
Tumor
-0.2
616
Normal
-0.2
914
Normal
-0.2
944
Normal
-0.2
312
Normal
-0.2
455
Tumor
-0.2
635
Tumor
-0.2
353
Tumor
-0.2
746
Normal
-0.2
915
Tumor
-0.2
572
Normal
-0.2
715
Tumor
-0.2
528
Normal
-0.2
414
Normal
-0.2
861
Tumor
-0.2
136
Normal
-0.2
617
Tumor
-0.2
217
Tumor
-0.2
444
Normal
-0.2
558
Normal
-0.2
778
Normal
-0.2
738
Normal
-0.3
538
Normal
-0.3
1026
Normal
-0.3
1016
Normal
-0.3
132
Normal
-0.3
685
Tumor
-0.3
471
Tumor
-0.3
258
Normal
-0.3
231
Tumor
-0.3
742
Normal
-0.3
314
Normal
-0.3
466
Normal
-0.3
384
Normal
-0.3
714
Normal
-0.3
434
Normal
-0.3
422
Normal
-0.3
354
Normal
-0.3
981
Tumor
-0.3
924
Normal
-0.3
1014
Normal
-0.3
546
Normal
-0.3
618
Normal
-0.3
628
Normal
-0.3
883
Tumor
-0.3
926
Normal
-0.3
716
Normal
-0.3
513
Tumor
-0.3
415
Tumor
-0.3
564
Normal
-0.3
647
Tumor
-0.3
435
Tumor
-0.3
642
Normal
-0.3
722
Normal
-0.3
756
Normal
-0.3
921
Tumor
-0.4
362
Normal
-0.4
636
Normal
-0.4
492
Normal
-0.4
1042
Normal
-0.4
222
Normal
-0.4
1046
Normal
-0.4
483
Tumor
-0.4
468
Normal
-0.4
557
Tumor
-0.4
368
Normal
-0.4
697
Tumor
-0.4
786
Normal
-0.4
913
Tumor
-0.4
196
Normal
-0.4
192
Normal
-0.4
878
Normal
-0.4
424
Normal
-0.4
877
Tumor
-0.4
421
Tumor
-0.4
147
Tumor
-0.4
956
Normal
-0.4
881
Tumor
-0.4
1022
Normal
-0.4
395
Tumor
-0.4
862
Normal
-0.4
221
Tumor
-0.4
698
Normal
-0.4
214
Normal
-0.4
386
Normal
-0.4
664
Normal
-0.4
525
Tumor
-0.4
356
Normal
-0.4
327
Tumor
-0.4
412
Normal
-0.4
446
Normal
-0.4
922
Normal
-0.4
494
Normal
-0.4
428
Normal
-0.4
686
Normal
-0.4
1021
Tumor
-0.5
1032
Normal
-0.5
218
Normal
-0.5
392
Normal
-0.5
864
Normal
-0.5
1028
Normal
-0.5
574
Normal
-0.5
452
Normal
-0.5
515
Tumor
-0.5
954
Normal
-0.5
568
Normal
-0.5
342
Normal
-0.5
1045
Tumor
-0.5
641
Tumor
-0.5
863
Tumor
-0.5
982
Normal
-0.5
526
Normal
-0.5
416
Normal
-0.5
536
Normal
-0.5
514
Normal
-0.5
436
Normal
-0.5
464
Normal
-0.5
868
Normal
-0.5
713
Tumor
-0.5
394
Normal
-0.5
1025
Tumor
-0.5
955
Tumor
-0.5
388
Normal
-0.5
432
Normal
-0.5
1041
Tumor
-0.5
672
Normal
-0.5
484
Normal
-0.5
964
Normal
-0.5
376
Normal
-0.5
671
Tumor
-0.5
1043
Tumor
-0.6
456
Normal
-0.6
451
Tumor
-0.6
328
Normal
-0.6
873
Tumor
-0.6
918
Normal
-0.6
648
Normal
-0.6
396
Normal
-0.6
443
Tumor
-0.6
858
Normal
-0.6
426
Normal
-0.6
911
Tumor
-0.6
925
Tumor
-0.6
866
Normal
-0.6
516
Normal
-0.7
867
Tumor
-0.7
518
Normal
-0.7
524
Normal
-0.7
857
Tumor
-0.7
366
Normal
-0.7
874
Normal
-0.8
665
Tumor
-0.8
744
Normal
-0.9
488
Normal
-0.9
363
Tumor
-0.9
852
Normal
-0.9
666
Normal
-0.9
662
Normal
-1.0
816
Normal
-1.0
448
Normal
-1.0
912
Normal
-1.1
882
Normal
-1.1
938
Normal
-1.1
884
Normal
-1.3
824
Normal
-1.3
818
Normal
-1.4
1044
Normal
-1.9
498
Normal
-2.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
