MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.5 nTPM
HPA Brain:14.0 nTPM
GTEx:4.5 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:24.3 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.9
1827 Male, age 72, unknown 15.1
2666 Male, age 74, left hemisphere 14.5
2019 Male, age 18, unknown 14.3
2586 Male, age 75, left hemisphere 14.3
2411 Female, age 72, unknown 13.5
2828 Female, age 72, unknown 13.3
1870 Female, age 42, unknown 12.5
2219 Male, age 76, both hemispheres 11.4
1830 Male, age 51, unknown 10.2
1833 Male, age 53, unknown 10.1
Dorsal raphe nucleus
nTPM: 13.0
2298 Female, age 72, unknown 15.8
1828 Male, age 53, unknown 12.5
2750 Male, age 76, both hemispheres 12.5
2047 Male, age 72, unknown 12.3
2016 Female, age 72, unknown 11.9
Inferior colliculus
nTPM: 11.0
2097 Female, age 72, unknown 13.4
1890 Male, age 53, unknown 12.3
2849 Male, age 72, unknown 9.4
1848 Female, age 42, unknown 8.9
Median raphe nucleus
nTPM: 11.5
2220 Male, age 76, midline 11.5
Periaquaductal grey, anterior
nTPM: 14.0
1795 Male, age 51, unknown 15.3
2502 Female, age 75, unknown 13.6
1947 Male, age 18, unknown 13.2
Periaquaductal grey, dorsal
nTPM: 11.6
1831 Male, age 72, unknown 11.8
2464 Female, age 72, unknown 11.8
1840 Male, age 53, unknown 11.7
2850 Male, age 76, both hemispheres 11.0
Periaquaductal grey, lateral
nTPM: 9.9
2053 Male, age 18, unknown 10.9
2140 Male, age 76, both hemispheres 9.5
2272 Male, age 74, both hemispheres 9.4
Pretectal area
nTPM: 14.0
1816 Male, age 51, unknown 17.3
2007 Male, age 72, unknown 17.3
1817 Female, age 42, unknown 16.2
1944 Female, age 72, unknown 16.0
1815 Male, age 53, unknown 15.8
2316 Male, age 76, right hemisphere 13.7
2667 Female, age 75, unknown 13.3
2273 Male, age 74, both hemispheres 12.4
2224 Female, age 72, unknown 12.3
2407 Male, age 75, both hemispheres 10.9
2825 Male, age 18, unknown 9.2
Red nucleus
nTPM: 12.2
2785 Male, age 18, unknown 14.2
2588 Male, age 74, left hemisphere 13.8
1821 Female, age 72, unknown 13.7
2503 Female, age 72, unknown 12.9
1954 Female, age 42, unknown 12.8
2725 Female, age 75, unknown 12.5
2227 Male, age 72, unknown 12.4
1904 Male, age 53, unknown 11.9
1865 Male, age 51, unknown 11.5
2769 Male, age 72, unknown 11.2
2584 Male, age 75, left hemisphere 10.4
2823 Male, age 76, right hemisphere 9.8
Substantia nigra
nTPM: 13.7
1889 Female, age 72, unknown 16.3
1851 Male, age 51, unknown 15.7
1916 Female, age 42, unknown 15.0
2665 Male, age 74, both hemispheres 14.5
1941 Male, age 53, unknown 13.8
2590 Female, age 75, unknown 13.1
2409 Female, age 72, unknown 12.5
2583 Male, age 75, right hemisphere 12.2
2241 Male, age 72, unknown 11.8
2699 Male, age 18, unknown 11.8
Superior colliculus
nTPM: 13.5
2261 Male, age 18, unknown 17.1
1796 Male, age 53, unknown 15.5
2087 Female, age 72, unknown 15.3
2668 Female, age 75, unknown 14.4
1995 Male, age 72, unknown 13.1
1913 Female, age 42, unknown 12.8
2587 Male, age 74, left hemisphere 12.2
1895 Male, age 76, right hemisphere 11.8
1839 Male, age 51, unknown 11.6
2664 Male, age 75, both hemispheres 10.7
Ventral tegmental area
nTPM: 12.3
2410 Female, age 72, unknown 15.5
1915 Female, age 42, unknown 13.3
2218 Male, age 76, both hemispheres 12.2
1942 Male, age 51, unknown 11.7
2223 Female, age 72, unknown 10.9
2021 Male, age 53, unknown 10.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.5
Samples: 139

Max nTPM: 8.2
Min nTPM: 1.1
Std nTPM: 1.2
Median nTPM: 4.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 7.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 7.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 7.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 7.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 7.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 7.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 7.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 6.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 6.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 6.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.4
FF:10158-103A5 76 years, female 17.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 13.4
Min nTPM: 8.9
Sample A Female 13.4
Sample B Female 9.2
Sample C Male 9.6
Sample D Male 8.9
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 16.4
Min nTPM: 11.0
Sample A Female 11.8
Sample B Female 11.0
Sample C Male 16.4
Sample D Male 11.8
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 10.0
Min nTPM: 8.7
Sample B Female 9.5
Sample C Male 10.0
Sample D Male 8.7
Superior colliculi
nTPM: 13.1
Samples: 4

Max nTPM: 16.3
Min nTPM: 10.9
Sample A Female 13.7
Sample B Female 10.9
Sample C Male 16.3
Sample D Male 11.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 26.0
Min nTPM: 22.9
Sample A Male 22.9
Sample B Male 24.7
Sample C Female 23.7
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69262306 Antisense, RP_050303_01_H02, Mouse strain C57BL/6J (56 days, male) 2.6

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