We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPTBN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
165.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
138.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
133.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
127.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
124.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
123.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
120.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
114.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
105.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
101.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
100.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
98.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
98.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
96.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
96.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
94.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
93.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
90.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
89.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
88.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
88.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
87.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
84.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
82.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
81.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
81.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
79.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
79.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
78.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
78.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
78.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
77.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
76.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
75.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
74.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
73.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
73.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
72.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
71.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
70.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
70.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
69.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
68.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
68.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
67.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
67.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
66.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
66.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
66.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
66.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
65.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
65.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
65.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
65.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
64.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
64.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
64.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
63.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
61.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
61.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
61.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
60.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
57.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
57.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
56.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
56.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
56.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
56.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
56.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
55.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
55.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
55.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
54.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
52.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
52.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
52.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
51.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
50.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
49.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
48.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
48.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
47.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
47.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
47.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
47.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
47.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
46.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
46.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
46.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
46.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
45.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
45.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
44.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
43.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
43.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
43.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
43.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
42.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
41.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
40.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
40.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
39.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
38.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
38.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
36.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
36.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
35.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
32.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPTBN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.0
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
218.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
147.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
143.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
140.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
124.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
122.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
117.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
116.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
115.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
115.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
97.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
95.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
93.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
93.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
92.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
92.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
92.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
90.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
90.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
89.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
89.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
88.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
86.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
85.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
84.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
82.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
82.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
80.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
80.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
79.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
79.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
78.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
77.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
73.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
73.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
73.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
73.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
72.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
71.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
71.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
70.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
69.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
69.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
68.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
68.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
68.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
68.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
68.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
67.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
67.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
67.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
66.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
66.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
65.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
64.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
63.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
62.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
61.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
61.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
61.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
61.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
60.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
58.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
58.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
58.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
57.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
56.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
56.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
55.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
55.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
55.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
54.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
54.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
53.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
53.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
53.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
52.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
51.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
50.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
50.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
50.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
49.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
49.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
49.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
49.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
49.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
49.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
48.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
48.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
48.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
47.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
47.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
47.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
47.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
47.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
46.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
46.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
46.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
46.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
46.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
46.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
45.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
45.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
45.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
44.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
43.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
43.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
43.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
43.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
42.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
42.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
42.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
41.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
41.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
41.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
40.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
40.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
39.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
39.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
39.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
36.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
36.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
35.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
34.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
32.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
32.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
0.7
685
Tumor
0.6
737
Tumor
0.6
425
Tumor
0.6
615
Tumor
0.5
1025
Tumor
0.5
743
Tumor
0.5
921
Tumor
0.5
271
Tumor
0.5
567
Tumor
0.4
958
Normal
0.4
412
Normal
0.4
221
Tumor
0.4
627
Tumor
0.4
746
Normal
0.4
911
Tumor
0.3
977
Tumor
0.3
695
Tumor
0.3
873
Tumor
0.3
868
Normal
0.3
975
Tumor
0.3
867
Tumor
0.3
472
Normal
0.3
448
Normal
0.3
1044
Normal
0.3
416
Normal
0.3
785
Tumor
0.3
723
Tumor
0.3
738
Normal
0.3
1014
Normal
0.3
728
Normal
0.3
1031
Tumor
0.3
966
Normal
0.3
478
Normal
0.3
477
Tumor
0.3
916
Normal
0.3
968
Normal
0.3
1022
Normal
0.3
1043
Tumor
0.3
951
Tumor
0.3
421
Tumor
0.3
915
Tumor
0.3
1032
Normal
0.3
924
Normal
0.3
545
Tumor
0.3
534
Normal
0.3
982
Normal
0.3
443
Tumor
0.3
817
Tumor
0.3
1026
Normal
0.3
1042
Normal
0.3
745
Tumor
0.2
546
Normal
0.2
714
Normal
0.2
742
Normal
0.2
1046
Normal
0.2
553
Tumor
0.2
698
Normal
0.2
852
Normal
0.2
455
Tumor
0.2
964
Normal
0.2
616
Normal
0.2
635
Tumor
0.2
494
Normal
0.2
778
Normal
0.2
363
Tumor
0.2
192
Normal
0.2
617
Tumor
0.2
755
Tumor
0.2
518
Normal
0.2
874
Normal
0.2
422
Normal
0.2
451
Tumor
0.2
328
Normal
0.2
878
Normal
0.2
727
Tumor
0.2
426
Normal
0.2
364
Normal
0.2
482
Normal
0.2
228
Normal
0.2
938
Normal
0.2
465
Tumor
0.2
824
Normal
0.2
131
Tumor
0.2
956
Normal
0.2
952
Normal
0.2
261
Tumor
0.2
331
Tumor
0.2
981
Tumor
0.2
967
Tumor
0.2
516
Normal
0.2
538
Normal
0.2
424
Normal
0.2
474
Normal
0.2
756
Normal
0.2
665
Tumor
0.2
517
Tumor
0.2
471
Tumor
0.2
1028
Normal
0.2
214
Normal
0.2
686
Normal
0.2
527
Tumor
0.2
498
Normal
0.2
983
Tumor
0.2
128
Normal
0.2
858
Normal
0.2
222
Normal
0.2
111
Normal
0.2
536
Normal
0.2
162
Normal
0.2
444
Normal
0.2
882
Normal
0.2
648
Normal
0.2
818
Normal
0.2
212
Normal
0.2
864
Normal
0.2
415
Tumor
0.2
227
Tumor
0.2
431
Tumor
0.2
481
Tumor
0.2
554
Normal
0.2
514
Normal
0.2
912
Normal
0.2
564
Normal
0.2
722
Normal
0.2
218
Normal
0.2
312
Normal
0.2
435
Tumor
0.2
866
Normal
0.2
816
Normal
0.2
436
Normal
0.2
386
Normal
0.2
618
Normal
0.2
146
Normal
0.2
344
Normal
0.2
716
Normal
0.1
297
Tumor
0.1
464
Normal
0.1
984
Normal
0.1
918
Normal
0.1
462
Normal
0.1
715
Tumor
0.1
231
Tumor
0.1
452
Normal
0.1
186
Normal
0.1
1045
Tumor
0.1
342
Normal
0.1
137
Tumor
0.1
268
Normal
0.1
358
Normal
0.1
922
Normal
0.1
944
Normal
0.1
881
Tumor
0.1
786
Normal
0.1
488
Normal
0.1
884
Normal
0.1
356
Normal
0.1
314
Normal
0.1
641
Tumor
0.1
278
Normal
0.1
954
Normal
0.1
414
Normal
0.1
456
Normal
0.1
298
Normal
0.1
563
Tumor
0.1
114
Normal
0.1
1027
Tumor
0.1
978
Normal
0.1
515
Tumor
0.1
172
Normal
0.1
558
Normal
0.1
148
Normal
0.1
428
Normal
0.1
741
Tumor
0.1
487
Tumor
0.1
976
Normal
0.1
1041
Tumor
0.1
466
Normal
0.1
171
Tumor
0.1
132
Normal
0.1
863
Tumor
0.1
484
Normal
0.1
513
Tumor
0.1
223
Tumor
0.1
1015
Tumor
0.1
862
Normal
0.1
196
Normal
0.1
572
Normal
0.1
136
Normal
0.1
354
Normal
0.1
135
Tumor
0.1
744
Normal
0.1
188
Normal
0.1
187
Tumor
0.1
112
Tumor
0.1
138
Normal
0.1
432
Normal
0.1
666
Normal
0.1
636
Normal
0.1
524
Normal
0.1
191
Tumor
0.1
284
Normal
0.1
142
Normal
0.1
537
Tumor
0.1
461
Tumor
0.1
926
Normal
0.1
642
Normal
0.1
124
Normal
0.1
664
Normal
0.1
492
Normal
0.1
628
Normal
0.1
468
Normal
0.1
258
Normal
0.0
813
Tumor
0.0
332
Normal
0.0
923
Tumor
0.0
696
Normal
0.0
362
Normal
0.0
286
Normal
0.0
955
Tumor
0.0
528
Normal
0.0
126
Normal
0.0
434
Normal
0.0
262
Normal
0.0
272
Normal
0.0
224
Normal
0.0
384
Normal
0.0
925
Tumor
0.0
713
Tumor
0.0
662
Normal
0.0
447
Tumor
0.0
365
Tumor
0.0
376
Normal
0.0
777
Tumor
0.0
232
Normal
0.0
388
Normal
0.0
535
Tumor
0.0
185
Tumor
0.0
285
Tumor
0.0
574
Normal
0.0
937
Tumor
0.0
568
Normal
0.0
814
Normal
0.0
127
Tumor
0.0
1016
Normal
0.0
671
Tumor
0.0
413
Tumor
0.0
1021
Tumor
0.0
446
Normal
0.0
943
Tumor
0.0
394
Normal
0.0
368
Normal
0.0
526
Normal
0.0
341
Tumor
0.0
392
Normal
0.0
823
Tumor
0.0
963
Tumor
0.0
327
Tumor
0.0
352
Normal
0.0
483
Tumor
0.0
366
Normal
-0.1
917
Tumor
-0.1
473
Tumor
-0.1
387
Tumor
-0.1
721
Tumor
-0.1
396
Normal
-0.1
433
Tumor
-0.1
423
Tumor
-0.1
311
Tumor
-0.1
672
Normal
-0.1
914
Normal
-0.1
357
Tumor
-0.1
953
Tumor
-0.1
125
Tumor
-0.1
493
Tumor
-0.1
195
Tumor
-0.1
427
Tumor
-0.1
857
Tumor
-0.1
217
Tumor
-0.1
697
Tumor
-0.2
815
Tumor
-0.2
883
Tumor
-0.2
145
Tumor
-0.2
957
Tumor
-0.2
257
Tumor
-0.2
497
Tumor
-0.2
851
Tumor
-0.2
463
Tumor
-0.2
361
Tumor
-0.2
861
Tumor
-0.2
913
Tumor
-0.2
113
Tumor
-0.3
141
Tumor
-0.3
313
Tumor
-0.3
383
Tumor
-0.3
367
Tumor
-0.3
123
Tumor
-0.3
147
Tumor
-0.3
353
Tumor
-0.3
161
Tumor
-0.3
355
Tumor
-0.3
525
Tumor
-0.3
277
Tumor
-0.4
467
Tumor
-0.4
663
Tumor
-0.4
375
Tumor
-0.4
395
Tumor
-0.4
267
Tumor
-0.4
533
Tumor
-0.4
393
Tumor
-0.4
965
Tumor
-0.4
571
Tumor
-0.5
213
Tumor
-0.5
877
Tumor
-0.5
445
Tumor
-0.5
557
Tumor
-0.5
491
Tumor
-0.5
351
Tumor
-0.6
647
Tumor
-0.6
724
Normal
-0.6
411
Tumor
-0.6
391
Tumor
-0.6
1013
Tumor
-0.7
385
Tumor
-0.7
343
Tumor
-0.7
283
Tumor
-0.7
573
Tumor
-0.8
661
Tumor
-0.9
865
Tumor
-1.0
211
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
