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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFIH1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFIH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.3
113
Tumor
1.3
1031
Tumor
1.1
327
Tumor
1.0
311
Tumor
0.9
262
Normal
0.9
955
Tumor
0.9
213
Tumor
0.8
724
Normal
0.7
1043
Tumor
0.7
471
Tumor
0.7
515
Tumor
0.7
217
Tumor
0.7
434
Normal
0.6
557
Tumor
0.6
536
Normal
0.6
218
Normal
0.6
857
Tumor
0.5
978
Normal
0.5
865
Tumor
0.5
527
Tumor
0.5
861
Tumor
0.5
627
Tumor
0.5
956
Normal
0.5
343
Tumor
0.5
661
Tumor
0.5
443
Tumor
0.4
386
Normal
0.4
525
Tumor
0.4
524
Normal
0.4
141
Tumor
0.4
188
Normal
0.4
925
Tumor
0.4
461
Tumor
0.4
446
Normal
0.4
883
Tumor
0.4
755
Tumor
0.4
1044
Normal
0.4
383
Tumor
0.4
283
Tumor
0.4
1015
Tumor
0.4
261
Tumor
0.3
467
Tumor
0.3
455
Tumor
0.3
451
Tumor
0.3
396
Normal
0.3
416
Normal
0.3
975
Tumor
0.3
126
Normal
0.3
365
Tumor
0.3
387
Tumor
0.3
884
Normal
0.3
966
Normal
0.3
487
Tumor
0.3
111
Normal
0.3
1028
Normal
0.3
415
Tumor
0.3
493
Tumor
0.3
964
Normal
0.3
523
Tumor
0.3
1045
Tumor
0.2
268
Normal
0.2
171
Tumor
0.2
777
Tumor
0.2
286
Normal
0.2
915
Tumor
0.2
477
Tumor
0.2
344
Normal
0.2
823
Tumor
0.2
456
Normal
0.2
662
Normal
0.2
745
Tumor
0.2
721
Tumor
0.2
492
Normal
0.2
221
Tumor
0.2
391
Tumor
0.2
558
Normal
0.2
161
Tumor
0.2
916
Normal
0.2
1026
Normal
0.2
427
Tumor
0.2
963
Tumor
0.2
881
Tumor
0.2
518
Normal
0.2
573
Tumor
0.2
816
Normal
0.2
488
Normal
0.2
353
Tumor
0.2
494
Normal
0.1
484
Normal
0.1
362
Normal
0.1
914
Normal
0.1
358
Normal
0.1
814
Normal
0.1
628
Normal
0.1
1022
Normal
0.1
867
Tumor
0.1
128
Normal
0.1
951
Tumor
0.1
138
Normal
0.1
228
Normal
0.1
664
Normal
0.1
526
Normal
0.1
858
Normal
0.1
376
Normal
0.1
137
Tumor
0.1
136
Normal
0.1
641
Tumor
0.1
913
Tumor
0.1
686
Normal
0.1
214
Normal
0.1
954
Normal
0.1
1046
Normal
0.1
498
Normal
0.1
723
Tumor
0.1
366
Normal
0.1
852
Normal
0.1
648
Normal
0.1
616
Normal
0.1
922
Normal
0.1
452
Normal
0.1
728
Normal
0.1
142
Normal
0.1
114
Normal
0.1
546
Normal
0.1
714
Normal
0.1
384
Normal
0.1
196
Normal
0.1
554
Normal
0.1
444
Normal
0.1
862
Normal
0.1
433
Tumor
0.1
352
Normal
0.1
445
Tumor
0.1
952
Normal
0.1
195
Tumor
0.1
568
Normal
0.1
395
Tumor
0.1
977
Tumor
0.0
284
Normal
0.0
191
Tumor
0.0
737
Tumor
0.0
958
Normal
0.0
697
Tumor
0.0
232
Normal
0.0
516
Normal
0.0
297
Tumor
0.0
187
Tumor
0.0
124
Normal
0.0
533
Tumor
0.0
428
Normal
0.0
466
Normal
0.0
926
Normal
0.0
917
Tumor
0.0
258
Normal
0.0
716
Normal
0.0
222
Normal
0.0
135
Tumor
0.0
918
Normal
0.0
1042
Normal
0.0
314
Normal
0.0
778
Normal
0.0
468
Normal
0.0
937
Tumor
0.0
272
Normal
0.0
481
Tumor
0.0
882
Normal
0.0
982
Normal
0.0
722
Normal
0.0
298
Normal
0.0
413
Tumor
0.0
698
Normal
0.0
742
Normal
0.0
375
Tumor
0.0
478
Normal
0.0
472
Normal
0.0
421
Tumor
0.0
818
Normal
0.0
538
Normal
0.0
368
Normal
0.0
422
Normal
0.0
448
Normal
0.0
392
Normal
0.0
874
Normal
0.0
1021
Tumor
0.0
756
Normal
0.0
473
Tumor
0.0
514
Normal
0.0
431
Tumor
0.0
574
Normal
0.0
957
Tumor
0.0
354
Normal
0.0
943
Tumor
0.0
474
Normal
0.0
212
Normal
0.0
464
Normal
0.0
564
Normal
0.0
123
Tumor
0.0
148
Normal
0.0
436
Normal
0.0
185
Tumor
0.0
746
Normal
0.0
968
Normal
0.0
1025
Tumor
0.0
412
Normal
0.0
513
Tumor
0.0
981
Tumor
-0.1
132
Normal
-0.1
738
Normal
-0.1
172
Normal
-0.1
361
Tumor
-0.1
785
Tumor
-0.1
824
Normal
-0.1
786
Normal
-0.1
332
Normal
-0.1
924
Normal
-0.1
312
Normal
-0.1
145
Tumor
-0.1
553
Tumor
-0.1
146
Normal
-0.1
1016
Normal
-0.1
328
Normal
-0.1
1032
Normal
-0.1
665
Tumor
-0.1
615
Tumor
-0.1
341
Tumor
-0.1
864
Normal
-0.1
424
Normal
-0.1
497
Tumor
-0.1
647
Tumor
-0.1
534
Normal
-0.1
423
Tumor
-0.1
851
Tumor
-0.1
878
Normal
-0.1
727
Tumor
-0.1
432
Normal
-0.1
635
Tumor
-0.1
186
Normal
-0.1
1014
Normal
-0.1
636
Normal
-0.1
938
Normal
-0.1
393
Tumor
-0.1
912
Normal
-0.1
414
Normal
-0.1
744
Normal
-0.1
563
Tumor
-0.1
278
Normal
-0.1
483
Tumor
-0.1
385
Tumor
-0.1
465
Tumor
-0.1
617
Tumor
-0.1
572
Normal
-0.1
147
Tumor
-0.1
127
Tumor
-0.1
672
Normal
-0.1
462
Normal
-0.1
741
Tumor
-0.1
535
Tumor
-0.1
866
Normal
-0.2
425
Tumor
-0.2
663
Tumor
-0.2
342
Normal
-0.2
257
Tumor
-0.2
921
Tumor
-0.2
984
Normal
-0.2
944
Normal
-0.2
271
Tumor
-0.2
696
Normal
-0.2
482
Normal
-0.2
112
Tumor
-0.2
192
Normal
-0.2
388
Normal
-0.2
873
Tumor
-0.2
162
Normal
-0.2
666
Normal
-0.2
976
Normal
-0.2
125
Tumor
-0.2
863
Tumor
-0.2
528
Normal
-0.2
447
Tumor
-0.2
367
Tumor
-0.2
491
Tumor
-0.2
364
Normal
-0.3
815
Tumor
-0.3
267
Tumor
-0.3
426
Normal
-0.3
967
Tumor
-0.3
868
Normal
-0.3
357
Tumor
-0.3
394
Normal
-0.3
817
Tumor
-0.3
231
Tumor
-0.3
642
Normal
-0.3
685
Tumor
-0.3
923
Tumor
-0.3
224
Normal
-0.3
953
Tumor
-0.3
713
Tumor
-0.3
1013
Tumor
-0.3
463
Tumor
-0.3
618
Normal
-0.4
356
Normal
-0.4
313
Tumor
-0.4
277
Tumor
-0.4
911
Tumor
-0.4
1041
Tumor
-0.4
517
Tumor
-0.5
285
Tumor
-0.5
567
Tumor
-0.5
965
Tumor
-0.5
715
Tumor
-0.6
813
Tumor
-0.6
355
Tumor
-0.6
695
Tumor
-0.6
411
Tumor
-0.6
537
Tumor
-0.6
227
Tumor
-0.6
223
Tumor
-0.6
435
Tumor
-0.7
331
Tumor
-0.7
671
Tumor
-0.7
1027
Tumor
-0.8
351
Tumor
-0.8
571
Tumor
-0.8
877
Tumor
-0.9
983
Tumor
-0.9
545
Tumor
-1.0
363
Tumor
-1.0
131
Tumor
-1.2
743
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
