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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPM1G is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
165.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
139.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
135.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
127.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
117.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
112.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
110.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
107.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
107.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
105.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
102.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
97.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
95.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
95.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
93.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
91.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
89.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
89.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
89.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
88.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
86.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
86.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
86.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
85.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
84.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
83.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
83.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
81.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
80.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
79.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
78.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
78.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
77.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
76.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
74.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
74.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
73.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
73.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
73.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
70.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
70.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
69.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
69.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
69.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
68.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
68.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
67.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
67.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
66.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
66.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
65.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
65.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
65.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
65.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
65.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
64.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
64.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
63.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
63.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
63.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
63.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
62.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
62.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
62.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
62.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
61.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
61.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
61.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
60.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
60.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
59.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
59.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
59.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
59.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
58.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
58.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
57.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
57.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
57.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
56.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
55.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
55.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
55.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
54.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
54.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
54.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
53.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
53.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
53.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
53.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
53.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
52.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
52.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
52.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
51.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
51.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
51.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
51.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
50.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
49.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
49.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
49.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
49.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
49.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
49.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
49.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
49.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
48.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
48.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
48.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
48.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
48.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
48.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
48.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
48.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
47.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
47.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
47.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
47.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
47.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
46.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
45.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
45.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
45.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
45.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
45.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
44.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
44.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
44.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
43.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
43.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
43.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
43.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
42.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
42.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
42.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
42.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
41.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
40.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
39.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
39.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
39.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
39.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
39.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
38.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
38.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
37.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
36.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
36.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
36.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
36.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
34.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
34.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
32.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
31.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
31.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
29.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
28.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
26.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
24.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPM1G is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.8
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
94.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
91.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
90.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
88.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
86.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
83.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
80.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
80.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
79.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
79.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
78.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
75.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
72.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
70.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
69.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
67.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
66.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
66.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
64.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
64.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
64.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
59.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
59.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
59.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
59.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
58.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
58.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
57.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
57.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
57.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
57.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
56.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
56.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
54.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
54.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
53.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
52.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
52.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
52.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
51.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
51.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
50.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
50.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
49.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
49.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
49.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
48.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
48.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
47.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
47.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
47.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
46.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
46.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
45.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
45.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
43.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
43.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
43.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
43.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
42.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
42.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
42.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
41.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
41.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
41.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
41.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
40.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
40.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
40.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
39.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
39.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
38.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
37.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
35.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
34.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
34.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
33.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
29.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
28.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.2
957
Tumor
1.1
724
Normal
1.0
355
Tumor
1.0
967
Tumor
1.0
943
Tumor
1.0
331
Tumor
1.0
497
Tumor
0.9
393
Tumor
0.9
351
Tumor
0.9
533
Tumor
0.9
1013
Tumor
0.8
357
Tumor
0.8
661
Tumor
0.8
983
Tumor
0.8
545
Tumor
0.8
743
Tumor
0.8
285
Tumor
0.8
227
Tumor
0.8
387
Tumor
0.7
953
Tumor
0.7
923
Tumor
0.7
211
Tumor
0.7
951
Tumor
0.7
447
Tumor
0.7
535
Tumor
0.7
965
Tumor
0.6
571
Tumor
0.6
523
Tumor
0.6
125
Tumor
0.6
517
Tumor
0.6
477
Tumor
0.6
161
Tumor
0.6
527
Tumor
0.6
567
Tumor
0.5
537
Tumor
0.5
785
Tumor
0.5
313
Tumor
0.5
513
Tumor
0.5
1015
Tumor
0.5
283
Tumor
0.5
427
Tumor
0.5
635
Tumor
0.5
665
Tumor
0.5
123
Tumor
0.5
311
Tumor
0.5
1021
Tumor
0.5
525
Tumor
0.5
487
Tumor
0.5
814
Normal
0.5
423
Tumor
0.4
755
Tumor
0.4
977
Tumor
0.4
1031
Tumor
0.4
391
Tumor
0.4
413
Tumor
0.4
815
Tumor
0.4
737
Tumor
0.4
367
Tumor
0.4
341
Tumor
0.4
385
Tumor
0.4
937
Tumor
0.4
297
Tumor
0.4
267
Tumor
0.4
685
Tumor
0.4
141
Tumor
0.4
671
Tumor
0.4
455
Tumor
0.4
363
Tumor
0.4
573
Tumor
0.3
715
Tumor
0.3
813
Tumor
0.3
925
Tumor
0.3
471
Tumor
0.3
861
Tumor
0.3
493
Tumor
0.3
491
Tumor
0.3
231
Tumor
0.3
881
Tumor
0.3
131
Tumor
0.3
975
Tumor
0.3
865
Tumor
0.3
1025
Tumor
0.3
411
Tumor
0.3
425
Tumor
0.3
647
Tumor
0.3
451
Tumor
0.3
777
Tumor
0.3
917
Tumor
0.2
465
Tumor
0.2
877
Tumor
0.2
873
Tumor
0.2
127
Tumor
0.2
483
Tumor
0.2
817
Tumor
0.2
883
Tumor
0.2
415
Tumor
0.2
697
Tumor
0.2
213
Tumor
0.2
467
Tumor
0.2
383
Tumor
0.2
171
Tumor
0.2
553
Tumor
0.1
433
Tumor
0.1
963
Tumor
0.1
395
Tumor
0.1
223
Tumor
0.1
461
Tumor
0.1
375
Tumor
0.1
1045
Tumor
0.1
271
Tumor
0.1
911
Tumor
0.1
695
Tumor
0.1
463
Tumor
0.1
431
Tumor
0.1
112
Tumor
0.1
343
Tumor
0.1
327
Tumor
0.1
145
Tumor
0.1
515
Tumor
0.1
741
Tumor
0.1
921
Tumor
0.0
261
Tumor
0.0
641
Tumor
0.0
361
Tumor
0.0
867
Tumor
0.0
443
Tumor
0.0
257
Tumor
0.0
135
Tumor
0.0
277
Tumor
0.0
185
Tumor
0.0
1041
Tumor
0.0
435
Tumor
0.0
913
Tumor
0.0
445
Tumor
0.0
421
Tumor
-0.1
137
Tumor
-0.1
721
Tumor
-0.1
915
Tumor
-0.1
536
Normal
-0.1
187
Tumor
-0.1
492
Normal
-0.1
617
Tumor
-0.1
851
Tumor
-0.1
663
Tumor
-0.1
195
Tumor
-0.1
147
Tumor
-0.1
221
Tumor
-0.1
627
Tumor
-0.1
563
Tumor
-0.1
981
Tumor
-0.1
745
Tumor
-0.1
823
Tumor
-0.2
1043
Tumor
-0.2
364
Normal
-0.2
328
Normal
-0.2
713
Tumor
-0.2
966
Normal
-0.2
412
Normal
-0.2
615
Tumor
-0.2
916
Normal
-0.2
1028
Normal
-0.2
353
Tumor
-0.2
142
Normal
-0.2
1027
Tumor
-0.2
498
Normal
-0.2
756
Normal
-0.2
191
Tumor
-0.2
955
Tumor
-0.2
113
Tumor
-0.2
416
Normal
-0.2
538
Normal
-0.2
365
Tumor
-0.2
146
Normal
-0.2
138
Normal
-0.2
212
Normal
-0.3
444
Normal
-0.3
746
Normal
-0.3
434
Normal
-0.3
857
Tumor
-0.3
278
Normal
-0.3
958
Normal
-0.3
356
Normal
-0.3
481
Tumor
-0.3
188
Normal
-0.3
778
Normal
-0.3
976
Normal
-0.3
978
Normal
-0.3
516
Normal
-0.3
524
Normal
-0.3
284
Normal
-0.3
852
Normal
-0.3
874
Normal
-0.3
136
Normal
-0.3
386
Normal
-0.3
786
Normal
-0.3
1046
Normal
-0.3
518
Normal
-0.3
217
Tumor
-0.3
1044
Normal
-0.3
557
Tumor
-0.3
968
Normal
-0.3
132
Normal
-0.3
528
Normal
-0.3
944
Normal
-0.4
268
Normal
-0.4
448
Normal
-0.4
662
Normal
-0.4
964
Normal
-0.4
954
Normal
-0.4
474
Normal
-0.4
272
Normal
-0.4
224
Normal
-0.4
484
Normal
-0.4
574
Normal
-0.4
464
Normal
-0.4
564
Normal
-0.4
192
Normal
-0.4
534
Normal
-0.4
466
Normal
-0.4
554
Normal
-0.4
396
Normal
-0.4
727
Tumor
-0.4
858
Normal
-0.4
126
Normal
-0.4
388
Normal
-0.4
286
Normal
-0.4
816
Normal
-0.4
572
Normal
-0.4
866
Normal
-0.4
664
Normal
-0.4
478
Normal
-0.4
1026
Normal
-0.4
558
Normal
-0.4
568
Normal
-0.4
1042
Normal
-0.4
938
Normal
-0.4
228
Normal
-0.4
314
Normal
-0.4
394
Normal
-0.4
956
Normal
-0.4
384
Normal
-0.4
494
Normal
-0.4
878
Normal
-0.4
1016
Normal
-0.4
344
Normal
-0.4
446
Normal
-0.4
472
Normal
-0.4
488
Normal
-0.4
526
Normal
-0.4
422
Normal
-0.4
914
Normal
-0.4
352
Normal
-0.4
918
Normal
-0.4
922
Normal
-0.4
818
Normal
-0.5
312
Normal
-0.5
298
Normal
-0.5
392
Normal
-0.5
863
Tumor
-0.5
824
Normal
-0.5
666
Normal
-0.5
924
Normal
-0.5
714
Normal
-0.5
546
Normal
-0.5
864
Normal
-0.5
698
Normal
-0.5
926
Normal
-0.5
262
Normal
-0.5
862
Normal
-0.5
742
Normal
-0.5
648
Normal
-0.5
124
Normal
-0.5
362
Normal
-0.5
952
Normal
-0.5
628
Normal
-0.5
468
Normal
-0.5
1032
Normal
-0.5
456
Normal
-0.5
514
Normal
-0.5
672
Normal
-0.5
696
Normal
-0.5
744
Normal
-0.5
222
Normal
-0.5
984
Normal
-0.5
148
Normal
-0.5
436
Normal
-0.5
342
Normal
-0.5
332
Normal
-0.5
982
Normal
-0.5
462
Normal
-0.5
716
Normal
-0.5
428
Normal
-0.5
738
Normal
-0.5
642
Normal
-0.5
426
Normal
-0.6
868
Normal
-0.6
452
Normal
-0.6
728
Normal
-0.6
686
Normal
-0.6
214
Normal
-0.6
884
Normal
-0.6
196
Normal
-0.6
258
Normal
-0.6
354
Normal
-0.6
722
Normal
-0.6
882
Normal
-0.6
232
Normal
-0.6
218
Normal
-0.6
128
Normal
-0.6
1022
Normal
-0.6
723
Tumor
-0.6
114
Normal
-0.6
432
Normal
-0.6
1014
Normal
-0.6
358
Normal
-0.6
162
Normal
-0.6
482
Normal
-0.6
366
Normal
-0.6
636
Normal
-0.6
172
Normal
-0.6
368
Normal
-0.6
186
Normal
-0.6
414
Normal
-0.6
424
Normal
-0.7
618
Normal
-0.7
111
Normal
-0.7
912
Normal
-0.7
376
Normal
-0.8
616
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
